Microbial-Sourced Nutritional Supplements for Human and Animal

A special issue of Microorganisms (ISSN 2076-2607). This special issue belongs to the section "Microbial Biotechnology".

Deadline for manuscript submissions: 31 December 2026 | Viewed by 3779

Special Issue Editors

School of Chemical Engineering, Zhengzhou University, Zhengzhou 450001, China
Interests: feed and nutrition; industrial fermentation; gut microbes and dietary fiber; probiotics; biomass utilization
School of Chemical Engineering, Zhengzhou University, Zhengzhou 450001, China
Interests: solid-state fermentation (SSF); microbial fermentation; organic waste; reactor design; SSF process; feed protein; single-cell protein; compost; bio-energy
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Special Issue Information

Dear Colleagues,

Nutritional supplements are a broad category of products that contain one or more dietary ingredients (including vitamins, minerals, fatty acids, amino acids, oligosaccharides, etc.) to bridge nutrient gaps in the diet. Over the last several decades, there has been a significant increase in the prevalence of supplement use for humans and animals. As a result, the supplement industry has seen consistent growth. Traditionally, nutritional supplements have been extracted from natural plants. However, the yield is greatly influenced by the seasons. Some nutritional supplements can be produced by organic chemical synthesis, but this often requires harmful solvents and is economically incompetent. Microbes consist of abundant enzymes, which can convert large chemical substrates into simple edible foods with a high nutritive value. In addition, microbes grow fast and do not have to rely on climatic conditions, which can be scaled up readily. Thus, microbial-sourced nutritional supplements, typically involving the use of microbes and/or enzymes, emerge as an interesting and economically viable concept.

Novel tools have been applied to these fields to enhance and accelerate the development of microbial-sourced nutritional supplements. This includes the high-throughput screening and characterization of microbes and enzymes, as well as genetic and metabolic engineering tools. By engineering strains/enzymes, it is possible to construct de novo synthesis pathways for certain nutritional supplements, in vivo or in vitro. Furthermore, the waste biomass or cheap chemicals can be adopted to produce nutritional supplements, improving sustainability and reducing CO2 emissions.

This Special Issue welcomes contributions in the form of original research, reviews, mini-reviews, opinions and methods manuscripts, exploring the use of microbes and/or functional enzymes to produce nutritional supplements, e.g., vitamins, minerals, fatty acids, amino acids, oligosaccharides. Topics include the following:

  1. Screening microbes that produce nutritional supplements;
  2. Mining and characterizing enzymes involved in nutritional supplements synthesis;
  3. Genetic engineering or metabolic optimization to improve the production yield/efficiency of nutritional supplements.
  4. Biosynthesis of supplements synthesis from waste biomass or cheap chemicals.
  5. Optimizing the fermentation process to reduce the cost and scale up the production of nutritional supplements.

Dr. Zhi Wang
Dr. Yafan Cai
Guest Editors

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Keywords

  • microbial-sourced
  • nutritional supplements
  • biosynthesis
  • fermentation
  • enzymes

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Published Papers (3 papers)

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Research

18 pages, 14962 KB  
Article
Rigidifying Flexible Regions of a Bacterial Laccase Enables High-Temperature Aflatoxin B1 Degradation
by Dongwei Xiong, Huiying Sun, Yuhang Sun, Peng Li and Miao Long
Microorganisms 2026, 14(4), 856; https://doi.org/10.3390/microorganisms14040856 - 10 Apr 2026
Viewed by 483
Abstract
Aflatoxin B1 (AFB1) poses a serious threat to global food and feed safety. Laccase-based enzymatic degradation represents a promising green strategy for AFB1 removal; however, its industrial application is severely limited by the rapid thermal inactivation of wild-type enzymes under high-temperature processing conditions [...] Read more.
Aflatoxin B1 (AFB1) poses a serious threat to global food and feed safety. Laccase-based enzymatic degradation represents a promising green strategy for AFB1 removal; however, its industrial application is severely limited by the rapid thermal inactivation of wild-type enzymes under high-temperature processing conditions (>70 °C). Here, we engineered the thermal stability of a laccase from Bacillus amyloliquefaciens B10 through an integrated strategy combining computational structural biology with semi-rational design. By coupling molecular dynamics (MD) simulations with folding free-energy (ΔΔG) calculations, we identified key flexible regions associated with thermal instability and subsequently implemented iterative saturation mutagenesis. The best single mutant, R196C, retained more than 96% relative activity after heat treatment at 80 °C for 10 min. Further iterative mutational stacking progressively enhanced thermostability: the R90E/R196C double mutant showed 1.25-fold higher activity at 80 °C than R196C, and the R90E/R196C/H54F triple mutant showed a further 1.16-fold increase over the double mutant. The final quadruple mutant, R90E/R196C/H54F/R253I, achieved 86.9% AFB1 degradation at 80 °C after 24 h. High-temperature MD simulations (100 ns at 353.15 K) indicated that the enhanced thermostability was associated with reduced conformational flexibility, lower radius of gyration (Rg) and solvent-accessible surface area (SASA), and a coil-to-β-sheet transition that contributed to stabilization of the protein core. In addition, efficient secretory expression of the engineered enzyme was achieved in Pichia pastoris, reaching 3.0 U/mL, while the crude enzyme maintained more than 70% activity at 80 °C. Collectively, these results provide a practical basis for the rational engineering and scalable production of thermostable biocatalysts for AFB1 detoxification-related applications of AFB1 control, and offer broader insights into the targeted enhancement of thermal stability in industrial enzymes. Full article
(This article belongs to the Special Issue Microbial-Sourced Nutritional Supplements for Human and Animal)
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17 pages, 1692 KB  
Article
Enhanced Exopolysaccharide Production in Bidirectional Liquid Fermentation of Ganoderma lucidum Using Clinacanthus nutans (Burm. f.) Lindau
by Zhen Chen, Shupei Zhang, Zimeng Wang, Pengru Li, Wanying Du, Jialu Li, Dan Chen, Mengyuan Yang, Kexin Zheng, Peng Yang, Xiaoyu Wei and Andong Gong
Microorganisms 2026, 14(3), 624; https://doi.org/10.3390/microorganisms14030624 - 10 Mar 2026
Viewed by 572
Abstract
This study explored the enhancement of exopolysaccharide (EPS) production by Ganoderma lucidum through bidirectional liquid fermentation, employing Clinacanthus nutans (Burm. f.) Lindau leaves as a medicinal substrate. The optimal concentration of C. nutans leaf powder was determined to be 6 g/L, resulting in [...] Read more.
This study explored the enhancement of exopolysaccharide (EPS) production by Ganoderma lucidum through bidirectional liquid fermentation, employing Clinacanthus nutans (Burm. f.) Lindau leaves as a medicinal substrate. The optimal concentration of C. nutans leaf powder was determined to be 6 g/L, resulting in a significant increase in both mycelial biomass (61.78%) and EPS yield (116.6%). Structural analyses indicated that the EPS supplemented with C. nutans underwent notable modifications. Fourier-transform infrared spectroscopy suggested the introduction of potential carbonyl groups and a shift in glycosidic linkage configuration. Monosaccharide composition analysis revealed a significant transition from a glucose-dominated profile in the control to a galactose-rich, more diverse profile, including uronic acids and amino sugars, in the experimental group. High-performance gel permeation chromatography demonstrated a transformation from a low, homogeneous molecular weight (4.7 kDa) to a heterogeneous, bimodal distribution featuring a prominent high-molecular-weight fraction (38.5 kDa). Consequently, the modified EPS exhibited significantly enhanced antioxidant activities, with scavenging rates for DPPH, hydroxyl, and ABTS radicals increasing to 55.5%, 35.1%, and 88.0%, respectively, at a concentration of 2 mg/mL. These findings demonstrate that C. nutans is an effective supplement for modulating the fermentation process of G. lucidum, not only boosting EPS production but also tailoring its structural characteristics to obtain polysaccharides with superior bioactivities, highlighting its potential in functional food and nutraceutical applications. Full article
(This article belongs to the Special Issue Microbial-Sourced Nutritional Supplements for Human and Animal)
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15 pages, 2577 KB  
Article
Adaptive Laboratory Evolution of a Microbial Consortium Enhancing Non-Protein Nitrogen Assimilation for Feed Protein Production
by Yi He, Shilei Wang, Yifan Mi, Mengyu Liu, Huimin Ren, Zhengxiang Guo, Zhen Chen, Yafan Cai, Jingliang Xu, Dong Liu, Chenjie Zhu, Zhi Wang and Hanjie Ying
Microorganisms 2025, 13(6), 1416; https://doi.org/10.3390/microorganisms13061416 - 18 Jun 2025
Cited by 2 | Viewed by 2092
Abstract
The increasing global demand for protein underscores the necessity for sustainable alternatives to soybean-based animal feed, which poses a challenge to human food security. Thus, the search for sustainable, alternative protein sources is transforming the feed industry in its effort to sustainable operations. [...] Read more.
The increasing global demand for protein underscores the necessity for sustainable alternatives to soybean-based animal feed, which poses a challenge to human food security. Thus, the search for sustainable, alternative protein sources is transforming the feed industry in its effort to sustainable operations. In this study, a microbial consortium was subjected to adaptive laboratory evolution using non-protein nitrogen (NPN) and wheat straw as the sole carbon source. The evolved microbial consortium was subsequently utilized to perform solid-state fermentation on wheat straw and NPN to produce feed protein. After 20 generations, the microbial consortium demonstrated tolerance to 5 g/L NPN, including ammonium sulfate, ammonium chloride, and urea, which represents a fivefold increase compared to the original microbial consortium. Among the three NPNs tested, the evolved microbial consortium exhibited optimal growth performance with ammonium sulfate. Subsequently, the evolved microbial consortium was employed for the solid-state fermentation (SSF) of wheat straw, and the fermentation conditions were optimized. It was found that the true protein content of wheat straw could be increased from 2.74% to 10.42% under specific conditions: ammoniated wheat straw (15% w/w), non-sterilization of the substrate, an inoculation amount of 15% (v/w), nitrogen addition amount of 0.5% (w/w), an initial moisture content of 70%, a fermentation temperature of 30 °C, and a fermentation duration of 10 days. Finally, the SSF process for wheat straw was successfully scaled up from 0.04 to 2.5 kg, resulting in an increased true protein content of 9.84%. This study provides a promising approach for the production of feed protein from straw and NPN through microbial fermentation, addressing protein resource shortages in animal feed and improving the value of waste straw. Full article
(This article belongs to the Special Issue Microbial-Sourced Nutritional Supplements for Human and Animal)
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