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Microorganisms publishes Special Issues to create collections of papers on specific topics, with the aim of building a community of authors and readers to discuss the latest research and develop new ideas and research directions. Special Issues are led by Guest Editors, who are experts on the topic and all Special Issue submissions follow MDPI's standard editorial process. The journal’s Editor-in-Chief and/or designated Editorial Board Member will oversee Guest Editor appointments and Special Issue proposals, checking their content for relevance and ensuring the suitability of the material for the journal. The papers published in a Special Issue will be collected and displayed on a dedicated page of the journal’s website. Further information on MDPI's Special Issue policies and Guest Editor responsibilities can be found here. For any inquiries related to a Special Issue, please contact the Editorial Office.

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Microbiota in Human Health and Disease, 2nd Edition

edited by Claire Morgan and

Paul D. Facey

submission deadline 30 Apr 2026 | Viewed by 52 | Submission Open

Keywords: microbiota; probiotics; prebiotics; synbiotics; biotherapeutics; probiogenomics; health and disease

(This special issue belongs to the Section Medical Microbiology)

Microbial Biotechnology: The Biodiversity, Properties and Benefits of Microorganisms in Medical, Clinical, Food and Environmental Fields, 2nd Edition

edited by

Marcelo Andrés Umsza-Guez

and

Karina Teixeira Magalhães-Guedes

submission deadline 30 Apr 2026 | Viewed by 49 | Submission Open

Keywords: microbial biotechnology; microorganism diversity; biotechnological applications; functional foods; pathogen control

(This special issue belongs to the Section Microbial Biotechnology)

State-of-the-Art Antimicrobial Agents and Resistance Research in Germany

edited by

Catalina-Suzana Stingu

submission deadline 30 Apr 2026 | Viewed by 49 | Submission Open

Keywords: antimicrobials; antimicrobial resistance (AMR); antibiotics; antibiotic-resistant bacteria (ARBs); antibiotic-resistant genes (ARGs); antimicrobial peptides; bacteriophage therapy

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Advances in Host Gut Microbiota—2nd Edition

edited by

Jean-Paul Motta

and Marion Garofalo

submission deadline 30 Apr 2026 | Viewed by 48 | Submission Open

Keywords: host– microbiota interactions; infectious and inflammatory gut disorders; microbiota ageing; intestinal epithelium

(This special issue belongs to the Section Gut Microbiota)

Decoding Resistance: From Molecular Detection to Clinical Control

edited by Thiago Pavoni Gomes, V. Zahner and

Raiane Cardoso Chamon

submission deadline 30 Apr 2026 | Viewed by 42 | Submission Open

Keywords: antimicrobial resistance; molecular detection; carbapenemase; plasmid; genomic surveillance; metagenomics; infection control; One Health; AMR epidemiology; drug resistance mechanisms

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Advancements in Pathogenic Bacteria: Detection, Genomic Analysis, and Antibiotic Resistance—2nd Edition

edited by Vlademir Vicente Cantarelli

submission deadline 30 Apr 2026 | Viewed by 37 | Submission Open

Keywords: bacterial infections; immunocompromised patients; identification methods; mass spectrometry; genomic analysis; antimicrobial resistance (AMR); faster detection methods; pathogenic bacteria; new bacterial pathogens

(This special issue belongs to the Section Medical Microbiology)

Neonatal Bacterial Infections

edited by

Elva Bonifácio Andrade

submission deadline 30 Apr 2026 | Viewed by 33 | Submission Open

Keywords: bacterial pathogenesis; host– pathogen interactions; neonatal immune system; prevention strategies; diagnosis; models of infection; evasion of host immunity

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Virulence-Associated Genes, Pathogenesis and Immunoevasion Mechanisms of African Swine Fever Virus

edited by

Lihua Wang

submission deadline 30 Apr 2026 | Viewed by 32 | Submission Open

Keywords: African swine fever; African swine fever virus; virulence-associated gene; pathogenesis; immunoevasion; antiviral strategy; vaccine

(This special issue belongs to the Section Veterinary Microbiology)

Pathobiology, Infection Biology and Control of Protozoan Parasites—the ONE HEALTH Approach

edited by

Cláudia Marques

Maria João Gouveia

and Susana R. Sousa

submission deadline 15 May 2026 | 4 articles | Viewed by 6482 | Submission Open

Keywords: protozoan parasites; host– parasite interactions; pathobiology; disease control; ONE HEALTH

(This special issue belongs to the Section Veterinary Microbiology)

The Biology of Host–Candida Interactions

edited by

Luca Spaggiari

and

Eva Pericolini

submission deadline 15 May 2026 | Viewed by 82 | Submission Open

Keywords: Candida species; host– pathogen interactions; fungal pathogenesis; host immune response; fungal morphogenesis; biofilm formation; antifungal resistance; microbiota; candidiasis; translational research

(This special issue belongs to the Section Medical Microbiology)

Role of Soil Microorganisms in Agricultural Production and Environmental Biotechnologies

edited by

Gianluigi Cardinali

submission deadline 20 May 2026 | Viewed by 51 | Submission Open

Keywords: soil; microbiology; bacteria; fungi; biotechnology; agriculture; PGP; BCA; stimulation; plant protection

(This special issue belongs to the Section Environmental Microbiology)

Borreliosis and Other Tick-Borne Diseases in the Northern and Southern Hemispheres, Second Edition

edited by

Giusto Trevisan

submission deadline 30 May 2026 | Viewed by 70 | Submission Open

Keywords: Lyme disease; Borrelia; diagnosis; tick-borne infections; relapsing fever

(This special issue belongs to the Section Medical Microbiology)

Microbiome-Driven Agriculture: Transforming Sustainability and Resilience Through Functional Microbial Insights and Metagenomics

edited by

Nazrul Islam

submission deadline 31 May 2026 | 7 articles | Viewed by 22044 | Submission Open

Keywords: microbiome; agriculture; metagenomics

(This special issue belongs to the Section Environmental Microbiology)

Role of Dietary Nutrients in the Modulation of Gut Microbiota

edited by

Inês Brandão

and Joana Ferreira-Gomes

submission deadline 31 May 2026 | 3 articles | Viewed by 10044 | Submission Open

Keywords: gut microbiota; diet; immunomodulation; dietary intervention studies

(This special issue belongs to the Section Gut Microbiota)

Ticks, Tick Microbiome and Tick-Borne Diseases

edited by

Yun Sang Cho

submission deadline 31 May 2026 | 4 articles | Viewed by 9909 | Submission Open

Keywords: ticks; tick-borne diseases; microbiome; tick control; tick-borne pathogens

(This special issue belongs to the Section Public Health Microbiology)

Understanding the Interactions Between HIV and Other Infections and Their Impact on Immune Function

edited by

Justyna Dominika Kowalska

and Botond Lakatos

submission deadline 31 May 2026 | 4 articles | Viewed by 9754 | Submission Open

Keywords: antimicrobials; natural products; anti-biofilm strategies; anti-microbial resistance; drug delivery; formulations

(This special issue belongs to the Section Medical Microbiology)

The Microbiome of the Urinary Tract: A Balance Between Eubiosis and Dysbiosis

edited by Michael Chrisofos and

Ilias Giannakodimos

submission deadline 31 May 2026 | 3 articles | Viewed by 7190 | Submission Open

Keywords: microbiome; urinary tract infections; eubiosis and dysbiosis

(This special issue belongs to the Section Medical Microbiology)

Sustainable Waste Biotechnologies: Biodegradation, Biotransformation, and Bioconversion

edited by

Xin Zhao

and Lei Zhang

submission deadline 31 May 2026 | 7 articles | Viewed by 7184 | Submission Open

Keywords: waste biotechnologies; waste management; biodegradation; biotransformation; bioconversion

(This special issue belongs to the Section Environmental Microbiology)

Climate-Driven Effects on the Human Microbiome and Public Health

edited by

Panos Zanos

and Anna Onisiforou

submission deadline 31 May 2026 | 1 articles | Viewed by 6616 | Submission Open

Keywords: climate change; human microbiome; public health

(This special issue belongs to the Section Medical Microbiology)

Bacterial Pathogenesis and Host Immune Responses

edited by Zhihui Cheng

submission deadline 31 May 2026 | 5 articles | Viewed by 6373 | Submission Open

Keywords: host– pathogen interactions; pathogenic bacteria; pathogenesis; bacterial infections; disease mechanisms; host immune responses; inflammatory responses ; vaccine development; antimicrobial resistance; therapeutic strategies

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Microbial Communities and Nitrogen Cycling

edited by Chen Ye,

Yu Gong

and Hao Liao

submission deadline 31 May 2026 | 4 articles | Viewed by 5982 | Submission Open

Keywords: microbial communities; nitrogen cycle; biogeochemical processes; nitrogen fixation; nitrification; denitrification; ammonification; ecosystem health; environmental changes; microbial diversity

(This special issue belongs to the Section Environmental Microbiology)

The Microbial Pathogenesis

edited by

Tingting Wang

and Canfeng Hua

submission deadline 31 May 2026 | 4 articles | Viewed by 5201 | Submission Open

Keywords: microbial pathogenesis; virulence factors; host– pathogen interactions; antibiotic resistance; immune evasion; bacterial genomics; fungal infections; viral pathogenesis; molecular microbiology; host immune response

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Microbial Evolutionary Genomics and Bioinformatics

edited by

Agostinho Antunes

submission deadline 31 May 2026 | 2 articles | Viewed by 4403 | Submission Open

Keywords: microbiomes genomics; bacteria genomics diversity and evolution; irus genomics and evolution; microbial pathogenicity genomics; bioinformatics advances in microbial research; microbial-genome-encoded bioactive molecules

(This special issue belongs to the Section Microbiomes)

Emerging Diseases in Aquatic Animals

edited by Tran Ngoc Tuan and

Nguyen Dinh-Hung

submission deadline 31 May 2026 | 1 articles | Viewed by 4208 | Submission Open

Keywords: emerging diseases; aquatic animal health; novel pathogens; disease outbreaks; diagnostic innovation

(This special issue belongs to the Section Veterinary Microbiology)

Intestinal Dysbiosis: 2nd Edition

edited by

Giuseppe Merra

submission deadline 31 May 2026 | 1 articles | Viewed by 3611 | Submission Open

Keywords: gut flora; intestinal flora; dysbiosis; inflammatory bowel diseases; leaky gut

(This special issue belongs to the Section Gut Microbiota)

Beneficial Microorganisms for Sustainable Agriculture

edited by

Tim J. Dumonceaux

and

Christina Eynck

submission deadline 31 May 2026 | 3 articles | Viewed by 3511 | Submission Open

Keywords: abiotic stress; biotic stress; biocontrol; biofertilizer; plant– microbe interaction

(This special issue belongs to the Section Plant Microbe Interactions)

The Role of Lactic Acid Bacteria and Their Metabolites in Fermented Foods: From Mechanisms of Action to Technological Applications and Human Health Effects

edited by

Małgorzata Ziarno

submission deadline 31 May 2026 | 2 articles | Viewed by 2841 | Submission Open

Keywords: LAB; fermentation; fermented foods; metabolites; health benefits

(This special issue belongs to the Section Food Microbiology)

Soil Microbial Carbon/Nitrogen/Phosphorus Cycling: 2nd Edition

edited by Dan Xiao and Yinhang Xia

submission deadline 31 May 2026 | 3 articles | Viewed by 2499 | Submission Open

Keywords: soil microbiome; nutrient cycling; soil micro-food web; land use change; ecosystem restoration; agricultural management

(This special issue belongs to the Section Environmental Microbiology)

Harnessing Microbial Power for a Sustainable Future

edited by

Emanuel Vamanu

and Laura Dorina Dinu

submission deadline 31 May 2026 | 2 articles | Viewed by 2396 | Submission Open

Keywords: microbes; sustainability; agricultural productivity; renewable energy; climate change; public health; circular economy; genetically engineered microbes; biopharmaceuticals; microbial biotechnology

(This special issue belongs to the Section Microbial Biotechnology)

Microbes in Wastewater Treatment

edited by Alejandro Rodriguez-Sanchez

submission deadline 31 May 2026 | 2 articles | Viewed by 2357 | Submission Open

Keywords: water pollution; bioremediation; biotechnological processes; wastewater systems; microbial engineering

(This special issue belongs to the Section Environmental Microbiology)

Probiotics and Their Health Benefits

edited by Yunhuan Liu

submission deadline 31 May 2026 | 1 articles | Viewed by 2309 | Submission Open

Keywords: probiotics; beneficial microbiota; host health; diseases

(This special issue belongs to the Section Medical Microbiology)

Advances in Molecular Biology of Entamoeba histolytica

edited by Laurence A. Marchat

submission deadline 31 May 2026 | 1 articles | Viewed by 1959 | Submission Open

Keywords: Entamoeba histolytica; genome structure and function; protein structure and function; pathogenicity and virulence; bioinformatics; omics; relationships with host and microbiome; metabolism; gene expression; drug resistance

(This special issue belongs to the Section Medical Microbiology)

Advances in Microbial Biofilm Formation (2nd Edition)

edited by

Ute Römling

submission deadline 31 May 2026 | 1 articles | Viewed by 964 | Submission Open

Keywords: commensal; environment; metabolism; multi-disciplinarity; pathogen; second messenger signaling

(This special issue belongs to the Section Biofilm)

Microbial Electrolysis Cells and Microbial Fuel Cells

edited by Shuyao Wang

submission deadline 31 May 2026 | 1 articles | Viewed by 890 | Submission Open

Keywords: bioelectrochemical systems; microbial fuel cell; microbial electrolysis cell; pollution control; cleaner energy production

(This special issue belongs to the Section Microbial Biotechnology)

Parasitic Infection and Host Immunity, 3rd Edition

edited by

Célio Geraldo Freire-de-Lima

and

Debora Decote-Ricardo

submission deadline 31 May 2026 | 1 articles | Viewed by 843 | Submission Open

Keywords: infectious diseases; parasite infection; host-parasite interaction; immunomodulation; immunopathology; epidemiology

(This special issue belongs to the Section Medical Microbiology)

Functional Dietary Components, Gut Microbiota, and Host Health: Interaction Mechanisms and Innovative Product Development

edited by

Zhenjun Zhu

submission deadline 31 May 2026 | 1 articles | Viewed by 703 | Submission Open

Keywords: prebiotics; probiotics; postbiotics; gut microbiota; host health

(This special issue belongs to the Section Gut Microbiota)

Pathogenesis and Host Response Modulation by Porphyromonas gingivalis

edited by

Nityananda Chowdhury

submission deadline 31 May 2026 | Viewed by 411 | Submission Open

Keywords: Porphyromonas gingivalis; functional genomics; host-pathogen interactions; pathogenesis; immune response

(This special issue belongs to the Section Medical Microbiology)

Microalgae at the Nexus of Sustainability: From Ecosystem Health to Biotechnological Innovation

edited by

Christopher Q. Lan

and

Siwei Gu

submission deadline 31 May 2026 | Viewed by 301 | Submission Open

Keywords: microalgae; ; harmful algal blooms; ; wastewater treatment; ; bioremediation; ; biofuels; ; nutraceuticals; ; biorefinery; ; climate change; ; aquatic ecology; ; pollution mitigation; ; Sustainable Development Goals

(This special issue belongs to the Section Environmental Microbiology)

Gut Microbiota and Human Health: From Mechanisms to Therapeutic Frontiers

edited by

Jun-Hyung Cho

submission deadline 31 May 2026 | 1 articles | Viewed by 286 | Submission Open

Keywords: gut microbiota; host– microbe interaction; Helicobacter pylori; microbiome metabolites; gut– brain axis; probiotics and prebiotics; fecal microbiota transplantation

(This special issue belongs to the Section Gut Microbiota)

Advances in Legionella pneumophila: Climate Change, Water Safety and Public Health

edited by

Antonios Papadakis

and

Dimosthenis Chochlakis

submission deadline 31 May 2026 | Viewed by 282 | Submission Open

Keywords: Legionella pneumophila; Legionnaires’ disease; climate change; Water Safety Plans; risk assessment and management; environmental and wastewater surveillance; rapid detection methods

(This special issue belongs to the Section Public Health Microbiology)

AI-Driven Insights into Microbial Research: From Data Analysis to Predictive Modeling

edited by

Chien-Sen Liao

submission deadline 31 May 2026 | Viewed by 274 | Submission Open

Keywords: microbiology; artificial intelligence; deep learning; machine learning; microbial genomics; microbiome analysis; data-driven research; predictive modeling; automated image recognition; AI applications in life sciences

Respiratory Diseases and Microbiome Dysbiosis

edited by

Heleni Loutrari

and Paraskevi Katsaounou

submission deadline 31 May 2026 | Viewed by 213 | Submission Open

Keywords: upper and lower airway disorders; microbiome; inflammation; immune response; infections; allergies; dysbiosis; gut– lung axis; metagenomics; multi-omics

(This special issue belongs to the Section Microbiomes)

Microbial Cell Factories for Sustainable Biomass Protein Production

edited by

Haitao Yu

and

Weiwei Wang

submission deadline 31 May 2026 | Viewed by 200 | Submission Open

Keywords: feed protein; animal science and biotechnology; agricultural synthetic biology; synthetic microbiomes; microbial cell factories; solid-state fermentation; industrial and agricultural waste; microbial genetics and breeding

(This special issue belongs to the Section Microbial Biotechnology)

Microbial Gene Editing Technology

edited by Yeshi Yin and Aihua Deng

submission deadline 31 May 2026 | Viewed by 196 | Submission Open

Keywords: gene editing; CRISPR/Cas; genome engineering; microbial cell factory

(This special issue belongs to the Section Microbial Biotechnology)

Rhizosphere Effectors in Plant–Microbe Interactions

edited by

Dongfei Han

submission deadline 31 May 2026 | Viewed by 177 | Submission Open

Keywords: plant– microbe interaction; innovative effector; rhizosphere effector

(This special issue belongs to the Section Plant Microbe Interactions)

Microbial Diversity and Ecology in Different Environments

edited by

Diogo Neves Proença

and

Maria Carolina Quecine

submission deadline 31 May 2026 | Viewed by 157 | Submission Open

Keywords: microbial diversity; environmental microbiology; microbiomes; metagenomics; microbial ecology; biotechnological applications; functional genomics; extremophiles; plant-microbe interactions; soil microbiology; marine microbiology; biodegradation; bioactive compounds

(This special issue belongs to the Section Environmental Microbiology)

Innovations in Stem Cell-Enhanced Oncolytic Virotherapy

edited by

Boris R. Minev

submission deadline 31 May 2026 | Viewed by 112 | Submission Open

Keywords: stem cells; oncolytic virotherapy; cancer treatment; tumor targeting; immunotherapy; viral vectors; clinical trials; therapeutic synergy

(This special issue belongs to the Section Virology)

Human Airway Microbiome and Immunity

edited by

Zhang Wang

submission deadline 31 May 2026 | Viewed by 104 | Submission Open

Keywords: respiratory microbiome; immune response; microbiome-host interaction; metagenomics; multi-omics; gut-lung axis; chronic respiratory diseases

(This special issue belongs to the Section Microbiomes)

Surveillance and Detection of the Antimicrobial Resistance

edited by

Eduardo Torres

and

Reynoso Eduardo Canek

submission deadline 31 May 2026 | Viewed by 96 | Submission Open

Keywords: antimicrobial resistance; genomic surveillance; rapid diagnostics; metagenomics; environmental monitoring; resistance gene detection; one health surveillance; whole genome sequencing; biosensors; bioinformatics

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Antimicrobial Efficacy of Medicinal and Wild Edible Fruits

edited by

Nkoana Ishmael Mongalo

submission deadline 31 May 2026 | Viewed by 93 | Submission Open

Keywords: antibiotic resistance; plant-based compounds; fractionation; characterized compounds; metabolites; NMR; GC-MS; LC-MS

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Displaying special issue 401-450 on page 9 of 12.

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