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Biomolecules, Volume 13, Issue 5

2023 May - 159 articles

Cover Story: Iron-sulfur (Fe–S) clusters are essential inorganic cofactors in proteins, synthetized in vivo via complex protein machineries. Bacteria have developed several Fe–S assembly systems, such as the ISC, NIF, and SUF systems. Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis, contains only the SUF machinery. This system is essential in Mtb, and therefore constitutes an interesting therapeutic target. Two proteins of the Mtb SUF system were characterized: Rv1464(sufS) and Rv1465(sufU). SufS is a type II cysteine desulfurase enzyme and SufU is a zinc-dependent protein, endowed with sulfurtransferase activity and is able to interact with SufS. Mtb SufS-SufU is resistant to oxidative stress and the presence of zinc in SufU is likely to be responsible for this improved resistance. View this paper
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Articles (159)

  • Article
  • Open Access
8 Citations
2,919 Views
18 Pages

Circulating Hsp70 Levels and the Immunophenotype of Peripheral Blood Lymphocytes as Potential Biomarkers for Advanced Lung Cancer and Therapy Failure after Surgery

  • Seyer Safi,
  • Luis Messner,
  • Merten Kliebisch,
  • Linn Eggert,
  • Ceyra Ceylangil,
  • Philipp Lennartz,
  • Benedict Jefferies,
  • Henriette Klein,
  • Moritz Schirren and
  • Gabriele Multhoff
  • + 2 authors

Lung cancer remains a devastating disease with a poor clinical outcome. A biomarker signature which could distinguish lung cancer from metastatic disease and detect therapeutic failure would significantly improve patient management and allow for indi...

  • Review
  • Open Access
8 Citations
4,102 Views
20 Pages

The Potential of Edible and Medicinal Resource Polysaccharides for Prevention and Treatment of Neurodegenerative Diseases

  • Qingxia Gan,
  • Yugang Ding,
  • Maoyao Peng,
  • Linlin Chen,
  • Jijing Dong,
  • Jiaxi Hu and
  • Yuntong Ma

As natural medicines in complementary and alternative medicine, edible and medicinal resources are being gradually recognized throughout the world. According to statistics from the World Health Organization, about 80% of the worldwide population has...

  • Review
  • Open Access
15 Citations
6,755 Views
14 Pages

Organoids: Construction and Application in Gastric Cancer

  • Chengdong Huo,
  • Xiaoxia Zhang,
  • Yanmei Gu,
  • Daijun Wang,
  • Shining Zhang,
  • Tao Liu,
  • Yumin Li and
  • Wenting He

Gastric organoids are biological models constructed in vitro using stem cell culture and 3D cell culture techniques, which are the latest research hotspots. The proliferation of stem cells in vitro is the key to gastric organoid models, making the ce...

  • Article
  • Open Access
1 Citations
3,122 Views
19 Pages

Membrane transporters and ion channels that play an indispensable role in metabolite trafficking have evolved to operate in Earth’s gravity. Dysregulation of the transportome expression profile at normogravity not only affects homeostasis along...

  • Review
  • Open Access
22 Citations
4,889 Views
16 Pages

Circulating microRNAs for Early Diagnosis of Ovarian Cancer: A Systematic Review and Meta-Analysis

  • Nanna Lond Skov Frisk,
  • Anja Elaine Sørensen,
  • Ole Birger Vesterager Pedersen and
  • Louise Torp Dalgaard

In this study, we conducted a systematic review and meta-analysis to summarize and evaluate the global research potential of different circulating miRNAs as an early diagnostic biomarker for OC. A systematic literature search for relevant studies was...

  • Communication
  • Open Access
6 Citations
5,029 Views
15 Pages

Comparison of In-Frame Deletion, Homology-Directed Repair, and Prime Editing-Based Correction of Duchenne Muscular Dystrophy Mutations

  • Xiaoying Zhao,
  • Kunli Qu,
  • Benedetta Curci,
  • Huanming Yang,
  • Lars Bolund,
  • Lin Lin and
  • Yonglun Luo

Recent progress in CRISPR gene editing tools has substantially increased the opportunities for curing devastating genetic diseases. Here we compare in-frame deletion by CRISPR-based non-homologous blunt end joining (NHBEJ), homology-directed repair (...

  • Feature Paper
  • Review
  • Open Access
2 Citations
4,051 Views
27 Pages

The regulation of mitochondria structure and function is at the core of numerous viral infections. Acting in support of the host or of virus replication, mitochondria regulation facilitates control of energy metabolism, apoptosis, and immune signalin...

  • Article
  • Open Access
11 Citations
3,876 Views
17 Pages

The IP6K Inhibitor LI-2242 Ameliorates Diet-Induced Obesity, Hyperglycemia, and Hepatic Steatosis in Mice by Improving Cell Metabolism and Insulin Signaling

  • Sandip Mukherjee,
  • Molee Chakraborty,
  • Jake Haubner,
  • Glen Ernst,
  • Michael DePasquale,
  • Danielle Carpenter,
  • James C. Barrow and
  • Anutosh Chakraborty

Obesity and nonalcoholic fatty liver disease (NAFLD) are global health concerns, and thus, drugs for the long-term treatment of these diseases are urgently needed. We previously discovered that the inositol pyrophosphate biosynthetic enzyme IP6K1 is...

  • Review
  • Open Access
19 Citations
4,248 Views
15 Pages

Heat shock protein 70 (HSP70) is a chaperone protein induced by various stresses on cells and is involved in various disease mechanisms. In recent years, the expression of HSP70 in skeletal muscle has attracted attention for its use as a prevention o...

  • Review
  • Open Access
8 Citations
6,389 Views
26 Pages

Ribosome assembly is one of the most fundamental processes of gene expression and has served as a playground for investigating the molecular mechanisms of how protein–RNA complexes (RNPs) assemble. A bacterial ribosome is composed of around 50...

  • Communication
  • Open Access
28 Citations
3,817 Views
10 Pages

Serum and Exosomal miR-7-1-5p and miR-223-3p as Possible Biomarkers for Parkinson’s Disease

  • Lorenzo Agostino Citterio,
  • Roberta Mancuso,
  • Simone Agostini,
  • Mario Meloni and
  • Mario Clerici

The etiology of Parkinson’s disease (PD) is poorly understood, and is strongly suspected to include both genetic and environmental factors. In this context, it is essential to investigate possible biomarkers for both prognostic and diagnostic p...

  • Article
  • Open Access
4 Citations
2,511 Views
12 Pages

Insight into Pathogenic Mechanism Underlying the Hereditary Cataract Caused by βB2-G149V Mutation

  • Jing Wu,
  • Silong Chen,
  • Jingjie Xu,
  • Wanyue Xu,
  • Sifan Zheng,
  • Qing Tian,
  • Chenqi Luo,
  • Xiangjun Chen and
  • Xingchao Shentu

Congenital cataracts account for approximately 5–20% of childhood blindness worldwide and 22–30% of childhood blindness in developing countries. Genetic disorders are the primary cause of congenital cataracts. In this work, we investigate...

  • Review
  • Open Access
28 Citations
10,736 Views
18 Pages

Evidence of Metabolic Dysfunction in Amyotrophic Lateral Sclerosis (ALS) Patients and Animal Models

  • Katarina Maksimovic,
  • Mohieldin Youssef,
  • Justin You,
  • Hoon-Ki Sung and
  • Jeehye Park

Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease that affects motor neurons, leading to muscle weakness, paralysis, and eventual death. Research from the past few decades has appreciated that ALS is not only a disease of the motor n...

  • Article
  • Open Access
5 Citations
3,290 Views
19 Pages

Clozapine is an effective antipsychotic for the treatment of antipsychotic-resistant schizophrenia; however, specific types of A/B adverse effects and clozapine-discontinuation syndromes are also well known. To date, both the critical mechanisms of c...

  • Article
  • Open Access
7 Citations
2,323 Views
14 Pages

Atherosclerosis is a complex, multi-stage disease characterized by pathological changes across the vascular wall. Endothelial dysfunction, inflammation, hypoxia, and vascular smooth muscle cell proliferation contribute to its progression. An effectiv...

  • Article
  • Open Access
8 Citations
2,814 Views
20 Pages

Identification and Characterization of circRNAs in Non-Lactating Dairy Goat Mammary Glands Reveal Their Regulatory Role in Mammary Cell Involution and Remodeling

  • Rong Xuan,
  • Jianmin Wang,
  • Qing Li,
  • Yanyan Wang,
  • Shanfeng Du,
  • Qingling Duan,
  • Yanfei Guo,
  • Peipei He,
  • Zhibin Ji and
  • Tianle Chao

This study conducted transcriptome sequencing of goat-mammary-gland tissue at the late lactation (LL), dry period (DP), and late gestation (LG) stages to reveal the expression characteristics and molecular functions of circRNAs during mammary involut...

  • Review
  • Open Access
26 Citations
5,703 Views
41 Pages

Dihydrocaffeic acid (DHCA) is a phenolic acid bearing a catechol ring and three-carbon side chain. Despite its being found in minor amounts in numerous plants and fungi of different origins, it has attracted the interest of various research groups in...

  • Feature Paper
  • Article
  • Open Access
7 Citations
3,245 Views
11 Pages

AI-Aided Search for New HIV-1 Protease Ligands

  • Roberto Arrigoni,
  • Luigi Santacroce,
  • Andrea Ballini and
  • Luigi Leonardo Palese

The availability of drugs capable of blocking the replication of microorganisms has been one of the greatest triumphs in the history of medicine, but the emergence of an ever-increasing number of resistant strains poses a serious problem for the trea...

  • Review
  • Open Access
25 Citations
10,171 Views
25 Pages

FOXM1: Functional Roles of FOXM1 in Non-Malignant Diseases

  • Zhenwang Zhang,
  • Mengxi Li,
  • Tian Sun,
  • Zhengrong Zhang and
  • Chao Liu

Forkhead box (FOX) proteins are a wing-like helix family of transcription factors in the DNA-binding region. By mediating the activation and inhibition of transcription and interactions with all kinds of transcriptional co-regulators (MuvB complexes,...

  • Review
  • Open Access
30 Citations
8,820 Views
41 Pages

Glycosylphosphatidylinositol (GPI)-anchored proteins (APs) are anchored at the outer leaflet of plasma membranes (PMs) of all eukaryotic organisms studied so far by covalent linkage to a highly conserved glycolipid rather than a transmembrane domain....

  • Review
  • Open Access
7 Citations
3,789 Views
19 Pages

Altered Purinergic Signaling in Neurodevelopmental Disorders: Focus on P2 Receptors

  • Marta Boccazzi,
  • Stefano Raffaele,
  • Thomas Zanettin,
  • Maria P. Abbracchio and
  • Marta Fumagalli

With the umbrella term ‘neurodevelopmental disorders’ (NDDs) we refer to a plethora of congenital pathological conditions generally connected with cognitive, social behavior, and sensory/motor alterations. Among the possible causes, gesta...

  • Article
  • Open Access
5 Citations
3,056 Views
16 Pages

The Effects of Two Kinds of Dietary Interventions on Serum Metabolic Profiles in Haemodialysis Patients

  • Lucyna Kozlowska,
  • Karolina Jagiello,
  • Krzesimir Ciura,
  • Anita Sosnowska,
  • Rafal Zwiech,
  • Zbigniew Zbrog,
  • Wojciech Wasowicz and
  • Jolanta Gromadzinska

The goal of this study was to evaluate the effects of two kinds of 24-week dietary interventions in haemodialysis patients, a traditional nutritional intervention without a meal before dialysis (HG1) and implementation of a nutritional intervention w...

  • Review
  • Open Access
14 Citations
4,715 Views
18 Pages

Ribosomal Protein uS5 and Friends: Protein–Protein Interactions Involved in Ribosome Assembly and Beyond

  • Anne-Marie Landry-Voyer,
  • Zabih Mir Hassani,
  • Mariano Avino and
  • François Bachand

Ribosomal proteins are fundamental components of the ribosomes in all living cells. The ribosomal protein uS5 (Rps2) is a stable component of the small ribosomal subunit within all three domains of life. In addition to its interactions with proximal...

  • Article
  • Open Access
14 Citations
4,178 Views
18 Pages

Adiponectin (ADIPO) and interleukin-8 (IL-8) are proteins that play a significant, albeit opposing, role in metabolic syndrome (MetS). The reported data on the effect of physical activity on the levels of these hormones in the population of people wi...

  • Article
  • Open Access
7 Citations
2,871 Views
13 Pages

Endocan Knockdown Down-Regulates the Expression of Angiogenesis-Associated Genes in Il-1ß Activated Chondrocytes

  • Michele Scuruchi,
  • Federica Aliquò,
  • Angela Avenoso,
  • Giuseppe Mandraffino,
  • Giovanna Vermiglio,
  • Aurelio Minuti,
  • Salvatore Campo,
  • Giuseppe Maurizio Campo and
  • Angela D’Ascola

Endocan is a small soluble proteoglycan (PG) known to be involved in inflammation and angiogenesis. Increased endocan expression was found in the synovia of arthritic patients and chondrocytes stimulated with IL-1ß. Considering these findings,...

  • Review
  • Open Access
35 Citations
8,957 Views
13 Pages

The fat mass and obesity-associated (FTO) gene was the first obesity-susceptibility gene identified through a genome-wide association study (GWAS). A growing number of studies have suggested that genetic variants of FTO are strongly associated with t...

  • Article
  • Open Access
2 Citations
2,203 Views
13 Pages

Association of Long Noncoding RNA Expression Signatures with Stress-Induced Myocardial Perfusion Defects

  • Yu-Chieh Chang,
  • Jun-Ting Liou,
  • Yu-Min Peng,
  • Guan-Jun Chen,
  • Chien-Yu Lin and
  • Chin-An Yang

Stress-induced myocardial perfusion defects found in dipyridamole–thallium-201 single-photon emission computed tomography imaging may indicate vascular perfusion abnormalities and risk of obstructive or nonobstructive coronary heart disease. Be...

  • Article
  • Open Access
3 Citations
2,619 Views
17 Pages

Oxidative stress participates at the baseline of different non-communicable pathologies such as cardiovascular diseases. Excessive formation of reactive oxygen species (ROS), above the signaling levels necessary for the correct function of organelles...

  • Communication
  • Open Access
4 Citations
2,675 Views
8 Pages

The Impact of Maternal Probiotics on Intestinal Vitamin D Receptor Expression in Early Life

  • Anita Sharma,
  • Yueyue Yu,
  • Jing Lu,
  • Lei Lu,
  • Yong-Guo Zhang,
  • Yinglin Xia,
  • Jun Sun and
  • Erika C. Claud

Vitamin D signaling via the Vitamin D Receptor (VDR) has been shown to protect against intestinal inflammation. Previous studies have also reported the mutual interactions of intestinal VDR and the microbiome, indicating a potential role of probiotic...

  • Article
  • Open Access
9 Citations
3,662 Views
11 Pages

Despite advancements in dental pain management, one of the most common reasons for emergency dental care is orofacial pain. Our study aimed to determine the effects of non-psychoactive Cannabis constituents in the treatment of dental pain and related...

  • Review
  • Open Access
16 Citations
6,605 Views
24 Pages

Leucine-rich repeat kinase 2 (LRRK2) is a large protein kinase that physiologically phosphorylates and regulates the function of several Rab proteins. LRRK2 is genetically implicated in the pathogenesis of both familial and sporadic Parkinson’s...

  • Feature Paper
  • Article
  • Open Access
5 Citations
3,620 Views
12 Pages

Distribution of α2-Adrenergic Receptors in the Living Human Brain Using [11C]yohimbine PET

  • Chloé Laurencin,
  • Sophie Lancelot,
  • Inès Merida,
  • Nicolas Costes,
  • Jérôme Redouté,
  • Didier Le Bars,
  • Philippe Boulinguez and
  • Bénédicte Ballanger

The neurofunctional basis of the noradrenergic (NA) system and its associated disorders is still very incomplete because in vivo imaging tools in humans have been missing up to now. Here, for the first time, we use [11C]yohimbine in a large sample of...

  • Article
  • Open Access
3 Citations
2,655 Views
17 Pages

Cellular Response to Bone Morphogenetic Proteins-2 and -7 Covalently Bound to Photocrosslinked Heparin–Diazoresin Multilayer

  • Magdalena Wytrwal,
  • Małgorzata Sekuła-Stryjewska,
  • Agata Pomorska,
  • Ewa Oclon,
  • Ewa Zuba-Surma,
  • Szczepan Zapotoczny and
  • Krzysztof Szczubiałka

Despite the plethora of research that exists on recombinant human bone morphogenetic protein-2 and -7 (rhBMP-2 and rhBMP-7) and has been clinically approved, there is still a need to gain information that would allow for their more rational use in bo...

  • Article
  • Open Access
5 Citations
2,932 Views
16 Pages

Fatty Acid Profiles of Some Siberian Bryophytes and Prospects of Their Use in Chemotaxonomy

  • Irina P. Filippova,
  • Olesia N. Makhutova,
  • Valeriya E. Guseynova and
  • Michail I. Gladyshev

The composition of fatty acids (FAs) in gametophyte samples of 20 Siberian bryophyte species from four orders of mosses and four orders of liverworts collected in relatively cold months (April and/or October) was examined. FA profiles were obtained u...

  • Review
  • Open Access
3 Citations
3,756 Views
14 Pages

Initially, protein aggregates were regarded as a sign of a pathological state of the cell. Later, it was found that these assemblies are formed in response to stress, and that some of them serve as signalling mechanisms. This review has a particular...

  • Review
  • Open Access
93 Citations
11,943 Views
22 Pages

Plant-Derived Extracellular Vesicles and Their Exciting Potential as the Future of Next-Generation Drug Delivery

  • Faisal A. Alzahrani,
  • Mohammad Imran Khan,
  • Nader Kameli,
  • Elham Alsahafi and
  • Yasir Mohamed Riza

Plant cells release tiny membranous vesicles called extracellular vesicles (EVs), which are rich in lipids, proteins, nucleic acids, and pharmacologically active compounds. These plant-derived EVs (PDEVs) are safe and easily extractable and have been...

  • Feature Paper
  • Review
  • Open Access
34 Citations
9,945 Views
18 Pages

Research Progress in Calcitonin Gene-Related Peptide and Bone Repair

  • Qichang Wang,
  • Haotian Qin,
  • Jiapeng Deng,
  • Huihui Xu,
  • Su Liu,
  • Jian Weng and
  • Hui Zeng

Calcitonin gene-related peptide (CGRP) has 37 amino acids. Initially, CGRP had vasodilatory and nociceptive effects. As research progressed, evidence revealed that the peripheral nervous system is closely associated with bone metabolism, osteogenesis...

  • Article
  • Open Access
2 Citations
2,576 Views
17 Pages

In cases of accidental high-dose total-body irradiation (TBI), acute radiation syndrome (ARS) can cause death. We reported that the thrombopoietin receptor agonist romiplostim (RP) has the potential to completely rescue mice exposed to lethal TBI. Ex...

  • Feature Paper
  • Article
  • Open Access
4 Citations
3,809 Views
23 Pages

Favorable Preclinical Pharmacological Profile of a Novel Antimalarial Pyrrolizidinylmethyl Derivative of 4-amino-7-chloroquinoline with Potent In Vitro and In Vivo Activities

  • Nicoletta Basilico,
  • Silvia Parapini,
  • Sarah D’Alessandro,
  • Paola Misiano,
  • Sergio Romeo,
  • Giulio Dondio,
  • Vanessa Yardley,
  • Livia Vivas,
  • Shereen Nasser and
  • Donatella Taramelli
  • + 5 authors

The 4-aminoquinoline drugs, such as chloroquine (CQ), amodiaquine or piperaquine, are still commonly used for malaria treatment, either alone (CQ) or in combination with artemisinin derivatives. We previously described the excellent in vitro activity...

  • Article
  • Open Access
5 Citations
2,869 Views
22 Pages

Socio-Demographic, Lifestyle, and Cardiometabolic Characteristics Associated with Low-Grade Systemic Inflammation in Russian Adult Population

  • Olga Mirolyubova,
  • Kamila Kholmatova,
  • Anna Postoeva,
  • Galina Kostrova,
  • Sofia Malyutina and
  • Alexander V. Kudryavtsev

Mortality from cardiovascular diseases (CVDs) is higher in Russia compared to other European countries. High-sensitivity C-reactive protein (hs-CRP) is a biomarker of inflammation, and its elevated levels indicate increased CVD risks. We aim to descr...

  • Commentary
  • Open Access
7 Citations
3,769 Views
8 Pages

Microtubule-targeting agents (MTAs) bind to one of several distinct sites in the tubulin dimer, the subunit of microtubules. The binding affinities of MTAs may vary by several orders of magnitude, even for MTAs that specifically bind to a particular...

  • Article
  • Open Access
12 Citations
3,332 Views
12 Pages

In drug design, the prediction of new active compounds from protein sequence data has only been attempted in a few studies thus far. This prediction task is principally challenging because global protein sequence similarity has strong evolutional and...

  • Review
  • Open Access
8 Citations
4,855 Views
12 Pages

Age-related macular degeneration (AMD) is a progressive degenerative disease of the central retina and the leading cause of severe loss of central vision in people over age 50. Patients gradually lose central visual acuity, compromising their ability...

  • Article
  • Open Access
12 Citations
3,842 Views
13 Pages

Lipoxin A4 (LXA4) Reduces Alkali-Induced Corneal Inflammation and Neovascularization and Upregulates a Repair Transcriptome

  • Jiucheng He,
  • Thang L. Pham,
  • Azucena H. Kakazu,
  • Abhilash Ponnath,
  • Khanh V. Do and
  • Haydee E. P. Bazan

Purpose: To investigate the anti-inflammatory and anti-angiogenic effects of the bioactive lipid mediator LXA4 on a rat model of severe corneal alkali injury. Methods: To induce a corneal alkali injury in the right eyes of anesthetized Sprague Dawley...

  • Review
  • Open Access
17 Citations
9,592 Views
26 Pages

Alzheimer disease (AD) models are based on the notion that abnormal protein aggregation is the primary event in AD, which begins a decade or longer prior to symptom onset, and culminates in neurodegeneration; however, emerging evidence from animal an...

  • Article
  • Open Access
12 Citations
5,846 Views
23 Pages

Dopamine D1 Agonists: First Potential Treatment for Late-Stage Parkinson’s Disease

  • Mechelle M. Lewis,
  • Lauren J. Van Scoy,
  • Sol De Jesus,
  • Jonathan G. Hakun,
  • Paul J. Eslinger,
  • Julio Fernandez-Mendoza,
  • Lan Kong,
  • Yang Yang,
  • Bethany L. Snyder and
  • Richard B. Mailman
  • + 4 authors

Current pharmacotherapy has limited efficacy and/or intolerable side effects in late-stage Parkinson’s disease (LsPD) patients whose daily life depends primarily on caregivers and palliative care. Clinical metrics inadequately gauge efficacy in...

  • Article
  • Open Access
4 Citations
4,153 Views
11 Pages

Molecular Mechanism behind the Safe Immunostimulatory Effect of Withania somnifera

  • Kriti Kalpana,
  • Shen Yap,
  • Moriya Tsuji and
  • Akira Kawamura

Withania somnifera (L.) Dunal (family Solanaceae) is a medicinal plant known for, among many pharmacological properties, an immune boosting effect. Our recent study revealed that its key immunostimulatory factor is lipopolysaccharide of plant-associa...

  • Review
  • Open Access
4 Citations
3,797 Views
26 Pages

9-O Acetylated Gangliosides in Health and Disease

  • Luis Vicente Herrera-Marcos,
  • Dil Sahali and
  • Mario Ollero

Glycosphingolipids comprise a lipid class characterized by the presence of sugar moieties attached to a ceramide backbone. The role of glycosphingolipids in pathophysiology has gained relevance in recent years in parallel with the development of anal...

  • Article
  • Open Access
2 Citations
2,960 Views
18 Pages

The Transcription Factor HaHB11 Boosts Grain Set and Yield in Rice Plants, Allowing Them to Approach Their Ideal Phenotype

  • Jesica Raineri,
  • Luciano Nicolás Caraballo,
  • Maximiliano Gómez and
  • Raquel Lía Chan

The ideal rice phenotype is that of plants exhibiting fewer panicles with high biomass, large grain number, flag leaf area with small insertion angles, and an erected morphology improving light interception. The sunflower transcription factor HaHB11,...

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Biomolecules - ISSN 2218-273X