Biology

25 pages, 13010 KB

Open AccessArticle

Suppressing Endothelial–Mesenchymal Transition Through the Histone Deacetylase 1/GATA Binding Protein 4 Pathway: The Mechanism of Protocatechuic Acid Against Myocardial Fibrosis Revealed by an Integrated Study

by Chengsi Jin, Chongyu Shao, Guanfeng Xu and Haitong Wan

Biology 2026, 15(2), 206; https://doi.org/10.3390/biology15020206 - 22 Jan 2026

Viewed by 846

Abstract

Background: Myocardial fibrosis, a central pathological process leading to heart failure, lacks specific mechanism-based therapies. Although the anti-inflammatory activity of the natural compound protocatechuic acid is recognized, its direct anti-fibrotic mechanism, particularly concerning the critical role of endothelial–mesenchymal transition (EndMT), remains unexplored. This [...] Read more.

Background: Myocardial fibrosis, a central pathological process leading to heart failure, lacks specific mechanism-based therapies. Although the anti-inflammatory activity of the natural compound protocatechuic acid is recognized, its direct anti-fibrotic mechanism, particularly concerning the critical role of endothelial–mesenchymal transition (EndMT), remains unexplored. This study aimed to investigate the protective effects and underlying mechanisms of protocatechuic acid. Methods: The study employed both in vivo and in vitro models. For in vivo evaluation, a rat model of myocardial fibrosis was induced by isoproterenol hydrochloride (ISO). For in vitro analysis, human umbilical vein endothelial cells (HUVECs) were stimulated with angiotensin II (Ang II) and subjected to siRNA-mediated histone deacetylase 1 (HDAC1) knockdown, alongside a co-culture model involving HUVECs and the AC16 human cardiomyocyte cells. Additionally, molecular docking and dynamics simulations were performed to evaluate the binding affinity and stability of protocatechuic acid with the target protein, HDAC1. Results: In vivo, protocatechuic acid significantly improved cardiac function, attenuated pathological injury, and reduced collagen deposition in ISO-induced fibrotic rats. It also potently suppressed inflammatory responses and inhibited the EndMT process. These beneficial effects were associated with decreased HDAC1 and increased GATA binding protein 4 (GATA4) expression in perivascular regions, which suggests the modulation of the HDAC1/GATA4 pathway. In vitro, protocatechuic acid suppressed Ang II-induced endothelial inflammation in HUVECs. This effect was replicated by HDAC1 knockdown, thus confirming that the HDAC1/GATA4 pathway mediates its anti-inflammatory action at the cellular level. Furthermore, molecular docking and dynamics simulations indicated that protocatechuic acid stably binds to a key target, HDAC1. Conclusions: Protocatechuic acid alleviates inflammation and EndMT by inhibiting the HDAC1/GATA4 signaling pathway, thereby preserving cardiac function and retarding the progression of myocardial fibrosis. These findings provide a theoretical and experimental foundation for the potential application of protocatechuic acid in treating cardiovascular diseases. Full article

(This article belongs to the Section Biochemistry and Molecular Biology)

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24 pages, 378 KB

Open AccessReview

Durable Management of Plant Viruses: Insights into Host Resistance and Tolerance Mechanisms

by Muhammad Zeshan Ahmed, Chenchen Zhao, Calum Wilson and Meixue Zhou

Biology 2026, 15(2), 205; https://doi.org/10.3390/biology15020205 - 22 Jan 2026

Cited by 2 | Viewed by 791

Abstract

Plant viruses cause substantial yield and quality losses worldwide, and their rapid evolution can erode deployed host resistance. This review synthesizes current knowledge of antiviral resistance and tolerance mechanisms, using barley yellow dwarf virus (BYDV) in cereals as an illustrative case study. We [...] Read more.

Plant viruses cause substantial yield and quality losses worldwide, and their rapid evolution can erode deployed host resistance. This review synthesizes current knowledge of antiviral resistance and tolerance mechanisms, using barley yellow dwarf virus (BYDV) in cereals as an illustrative case study. We first summarize key layers of plant antiviral immunity, including pre-formed physical and chemical barriers, dominant and recessive resistance genes, RNA silencing, hormone-regulated defense signaling, and degradation pathways such as the ubiquitin–proteasome system and selective autophagy. We then discuss how these mechanisms are exploited in breeding and biotechnology, covering conventional introgression, marker-assisted selection, QTL mapping and pyramiding, induced variation (mutation breeding and TILLING/ecoTILLING), transgenic strategies (pathogen-derived resistance and plantibodies), RNA interference-based approaches, and CRISPR-enabled editing of susceptibility factors. Finally, we highlight emerging nano-enabled tools and propose integrated strategies that combine genetic resistance with surveillance and vector management to improve durability under climate change and ongoing viral diversification. Full article

(This article belongs to the Section Plant Science)

16 pages, 4846 KB

Open AccessArticle

Therapeutically Induced Modulation of Collagen I-to-III Ratio Three Weeks After Rabbit Achilles Tendon Full Transection

by Gabriella Meier Bürgisser, Olivera Evrova, Pietro Giovanoli, Maurizio Calcagni and Johanna Buschmann

Biology 2026, 15(2), 204; https://doi.org/10.3390/biology15020204 - 22 Jan 2026

Cited by 1 | Viewed by 464

Abstract

During tendon healing, collagen III expression precedes that of collagen I. The collagen I-to-III ratio at a certain time point post-laceration serves as an indicator of the healing status. Consequently, it is crucial to understand how different therapeutic approaches to support tendon healing [...] Read more.

During tendon healing, collagen III expression precedes that of collagen I. The collagen I-to-III ratio at a certain time point post-laceration serves as an indicator of the healing status. Consequently, it is crucial to understand how different therapeutic approaches to support tendon healing affect the collagen I-to-III ratio in the extracellular matrix of a healing tendon, particularly across distinct anatomical zones. We compared the impact of a platelet-derived growth factor-BB (PDGF-BB) treatment via controlled release from coaxially electrospun DegraPol^® (Ab medica, Cerro Maggiore, Italy) hollow-fiber mesh with a treatment by the vehicle alone (no PDGF-BB) in the rabbit Achilles tendon full transection model and provide data on the collagen I-to-III ratio 3 weeks post-operation. For this purpose, we compared a dual-color Herovici staining to two single IHC labeling, for collagen I and collagen III, respectively. Herovici staining (HV) was expected to offer a more precise approach (pink-to-blue histogram) than the two separately labeled IHC stainings, both with chromogenic DAB labeling (red-to-green histogram), despite an anticipated positive correlation of the data assessed by these methods. Different zones were compared, i.e., native tendon tissue, reactive zone at interface to implant, hot zone within the core of the healing tendon and the zone within the scaffold, meaning the collagen deposited within the fibers of the implanted DegraPol^® tube, respectively. The analysis revealed that the ratios obtained via HV correlated weakly with the ratios obtained by IHC. Based on HV, PDGF-BB therapy led to higher collagen I-to-III ratios in all zones, except for the zone within the scaffold pores, while IHC did not reveal significant differences. Notably, collagen I-to-III ratios were not higher in immediate proximity, but rather distal from the PDGF-BB releasing implant, specifically in the core of the healing tendon tissue. Hence, a PDGF-BB therapy is suggestive of greater collagen maturation in specific zones of the healing tendon. Full article

(This article belongs to the Section Zoology)

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4 pages, 169 KB

Open AccessEditorial

Biogeochemical Element Cycling in Plant–Soil Systems: Implications for Ecosystem Dynamics and Services

by Daniel Puppe and Wajid Zaman

Biology 2026, 15(2), 203; https://doi.org/10.3390/biology15020203 - 22 Jan 2026

Viewed by 385

Abstract

Biogeochemical element cycling in plant–soil systems is fundamental for ecosystem dynamics and services [...] Full article

(This article belongs to the Special Issue Biogeochemical Element Cycling in Plant–Soil Systems: Implications for Ecosystem Dynamics and Services)

16 pages, 5310 KB

Open AccessArticle

Mitochondrial Phylogenomics of Tenthredinidae (Hymenoptera: Tenthredinoidea) Supports the Monophyly of Eriocampinae stat. nov.

by Siying Wan, Xiao Li, Beibei Tan, Meicai Wei and Gengyun Niu

Biology 2026, 15(2), 202; https://doi.org/10.3390/biology15020202 - 22 Jan 2026

Viewed by 608

Abstract

Tenthredinidae (Hymenoptera: Tenthredinoidea), the most species-rich sawfly family, features a controversial subfamily classification, particularly regarding Eriocampa Hartig, 1837, Conaspidia Konow, 1898, and their relatives. In this study, we sequenced and characterized 15 complete mitochondrial genomes from Eriocampa, Eriocampopsis Takeuchi, 1952, and Conaspidia [...] Read more.

Tenthredinidae (Hymenoptera: Tenthredinoidea), the most species-rich sawfly family, features a controversial subfamily classification, particularly regarding Eriocampa Hartig, 1837, Conaspidia Konow, 1898, and their relatives. In this study, we sequenced and characterized 15 complete mitochondrial genomes from Eriocampa, Eriocampopsis Takeuchi, 1952, and Conaspidia, and reconstructed the phylogeny of Tenthredinidae using a mitogenomic dataset including 69 species from 16 subfamilies. The mitochondrial genomes of these genera exhibited genus-specific tRNA rearrangements within the IQM and ARNS1EF clusters. Phylogenetic analyses using both Maximum Likelihood and Bayesian Inference consistently recovered (Eriocampa + Eriocampopsis + Conaspidia) as a monophyletic lineage distinct from other subfamilies of Tenthredinidae. Divergence-time estimates indicate that the Eriocampa lineage diverged from other tenthredinids around the Late Cretaceous–Paleocene boundary (~70 Ma) and diversified during the Eocene. This timing coincides with the radiation of their host plants (Araliaceae, Betulaceae, and Juglandaceae). We also compared the morphology of Eriocampinae with that of other subfamilies of Tenthredinidae and summarized the diagnostic characters of Eriocampinae. Integrating morphological and mitogenomic evidence supports the recognition of Eriocampinae Rohwer, 1911 stat. nov. This study not only clarifies the phylogenetic position of these genera but also provides new insights into the coevolutionary history between sawflies and angiosperms. Full article

(This article belongs to the Special Issue Mitochondrial Genomics of Arthropods)

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23 pages, 1967 KB

Open AccessReview

Retinal Astrocytes: Key Coordinators of Developmental Angiogenesis and Neurovascular Homeostasis in Health and Disease

by Yi-Yang Zhang, Qi-Fan Sun, Wen Bai and Jin Yao

Biology 2026, 15(2), 201; https://doi.org/10.3390/biology15020201 - 22 Jan 2026

Viewed by 722

Abstract

Retinal astrocytes reside mainly in the nerve fiber layer and are central to shaping retinal vessels and maintaining neurovascular balance. Derived from the optic nerve head, they spread across the inner retina to form a meshwork that both supports and instructs the emerging [...] Read more.

Retinal astrocytes reside mainly in the nerve fiber layer and are central to shaping retinal vessels and maintaining neurovascular balance. Derived from the optic nerve head, they spread across the inner retina to form a meshwork that both supports and instructs the emerging superficial vascular plexus. Immature astrocytes supply vascular endothelial growth factor-A(VEGF-A) to guide endothelial sprouting, while signals from growing vessels promote astrocyte maturation and strengthen the blood–retinal barrier. In disorders such as diabetic retinopathy and neovascular age-related macular degeneration, these cells show marked plasticity. Reactive astrogliosis can sustain VEGF and inflammation, favoring fragile, leaky neovessels, whereas alternative astrocyte states help reinforce barrier function and release anti-angiogenic factors. Located at the core of the neurovascular unit, astrocytes communicate continuously with endothelial cells, pericytes and neurons. This review integrates data from single-cell profiling and advanced imaging to outline astrocyte development, morphology and key signaling pathways (VEGF, PDGF, Wnt/Norrin, Eph/ephrin), and considers how tuning astrocyte polarization might be exploited to preserve retinal vascular integrity. Full article

(This article belongs to the Section Cell Biology)

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20 pages, 1857 KB

Open AccessReview

Maternal Embryonic Leucine Zipper Kinase (MELK) in Cancer: Biological Functions, Therapeutic Potential, and Controversies

by Alaeddin M. Alzeer and Saad Al-Lahham

Biology 2026, 15(2), 200; https://doi.org/10.3390/biology15020200 - 21 Jan 2026

Cited by 1 | Viewed by 1002

Abstract

The Maternal Embryonic Leucine Zipper Kinase (MELK) gene is a member of the Snf1/AMPK serine/threonine kinase family. MELK has recently attracted considerable interest in cancer biology due to its aberrant overexpression in various malignancies, including glioma, breast, lung, colorectal, gastric, and [...] Read more.

The Maternal Embryonic Leucine Zipper Kinase (MELK) gene is a member of the Snf1/AMPK serine/threonine kinase family. MELK has recently attracted considerable interest in cancer biology due to its aberrant overexpression in various malignancies, including glioma, breast, lung, colorectal, gastric, and hematological cancers. It has been shown that higher MELK levels are often correlated with unfavorable prognosis, aggressive tumor manifestations, resistance to treatment, and stem-like tumor morphologies. In this review we aim to summarize the current understanding of MELK biology, including its functions in cell cycle regulation, apoptosis, oncogenic signaling pathways, and tumor stemness. We also discuss the therapeutic potential, limitations, and controversy of MELK inhibitors, and implications in cancer diagnosis and treatment. MELK may not be a universal driver oncogene; nonetheless, it is consistently linked to aggressive disease, underscoring its potential as a prognostic biomarker and a candidate for therapeutic co-targeting in combination treatments. Full article

(This article belongs to the Section Cancer Biology)

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15 pages, 3355 KB

Open AccessArticle

Deleterious Mutations in the Mitogenomes of Cetacean Populations

by Matthew Freeman, Umayal Ramasamy and Sankar Subramanian

Biology 2026, 15(2), 199; https://doi.org/10.3390/biology15020199 - 21 Jan 2026

Viewed by 501

Abstract

Cetaceans are artiodactyls adapted to live in the marine environment, and this group includes whales, dolphins, and porpoises. Although mitochondrial nucleotide diversity has been reported separately for many cetacean groups, the proportion of deleterious mutations in these populations is unknown. Furthermore, a comparison [...] Read more.

Cetaceans are artiodactyls adapted to live in the marine environment, and this group includes whales, dolphins, and porpoises. Although mitochondrial nucleotide diversity has been reported separately for many cetacean groups, the proportion of deleterious mutations in these populations is unknown. Furthermore, a comparison of mitogenomic diversities across all cetaceans is also lacking. To investigate this, we conducted a comparative genomic analysis of 2244 mitochondrial genomes from 65 populations across 32 cetacean species. We observed a 78-fold variation in mitogenomic diversity among cetacean populations, suggesting a large difference in genetic diversity. We used the ratio of nonsynonymous-to-synonymous diversities (dN/dS) to measure the proportion of deleterious mutations in the mitochondrial exomes. The dN/dS ratio showed a 22-fold difference between the cetacean population. Based on genetic theories, the large differences observed in the two measures could be attributed to differences in the effective sizes of the cetacean populations. Typically, small populations have low heterozygosity and a high dN/dS ratio, and the reverse is true for large populations. This was further confirmed by the negative correlation observed between heterozygosity and dN/dS ratios of cetacean populations. While our analysis revealed similarities in mitogenomic diversity between the endangered and least-concern cetacean species, the dN/dS ratio of the former was found to be higher than that of the latter. The findings of this study are useful for identifying the relative magnitude of reductions in the population sizes of different cetacean species. This will help conservation management efforts prioritise the use of limited resources, time, and effort to protect the cetacean populations that need immediate attention. Full article

(This article belongs to the Special Issue Genetic Variability within and between Populations)

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15 pages, 936 KB

Open AccessReview

Neurobiological Convergence in SPDs and ADHD: Insights from a Narrative Review

by Daniele Corbo and Laura Clara Grandi

Biology 2026, 15(2), 198; https://doi.org/10.3390/biology15020198 - 21 Jan 2026

Viewed by 693

Abstract

The sensory system plays a critical role in development, as it enables the processing and integration of internal and external stimuli. Dysfunctions in this system lead to sensory processing disorders (SPDs), which affect approximately 5–13% of children aged 4–6 years, impacting not only [...] Read more.

The sensory system plays a critical role in development, as it enables the processing and integration of internal and external stimuli. Dysfunctions in this system lead to sensory processing disorders (SPDs), which affect approximately 5–13% of children aged 4–6 years, impacting not only sensory responsiveness but also social interaction, emotional regulation, motor coordination, learning, attention, communication, and sleep. Although SPDs have been extensively investigated from molecular to behavioral levels, their underlying neurobiological mechanisms remain debated, and reliable biomarkers are still lacking. Moreover, due to overlapping behavioral manifestations, SPDs are frequently misdiagnosed as attention deficit hyperactivity disorder (ADHD), leading to challenges in accurate diagnosis and treatment planning. This narrative review aims to synthesize current evidence on the neurofunctional and molecular underpinnings of SPDs in relation to ADHD, providing an integrated perspective on their converging and diverging pathways. By comparing neuroimaging and neurophysiological findings across the two conditions, we seek to deepen understanding of their shared mechanisms, clarify diagnostic boundaries, and inform the development of targeted, evidence-based interventions to address a critical gap in the field. Full article

(This article belongs to the Special Issue Molecular and Neurological Aspects of Sensory Processing Disorders)

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27 pages, 2553 KB

Open AccessArticle

Biotechnological Potential of Algerian Saffron Floral Residues: Recycling Phytochemicals with Antimicrobial Activity

by Nouria Meliani, Bouchra Loukidi, Larbi Belyagoubi, Nabila Belyagoubi-Benhammou, Salim Habi, Alessia D’Agostino, Antonella Canini, Saber Nahdi, Nassima Mokhtari Soulimane, Angelo Gismondi, Abdel Halim Harrath, Erdi Can Aytar and Gabriele Di Marco

Biology 2026, 15(2), 197; https://doi.org/10.3390/biology15020197 - 21 Jan 2026

Viewed by 558

Abstract

This study investigates the phytochemical profile, antioxidant capacity, and antimicrobial potential of Crocus sativus L. (saffron) tepal extracts obtained via different solvent systems. Here, a biochemical screening was performed using spectrophotometry and HPLC-DAD, while molecular docking simulations were carried out to evaluate the [...] Read more.

This study investigates the phytochemical profile, antioxidant capacity, and antimicrobial potential of Crocus sativus L. (saffron) tepal extracts obtained via different solvent systems. Here, a biochemical screening was performed using spectrophotometry and HPLC-DAD, while molecular docking simulations were carried out to evaluate the possible interactions between saffron tepal metabolites and bacterial target proteins. In parallel, antioxidant activity was assessed using radical scavenging assays, whereas antimicrobial potential (i.e., MIC, MBC, and MFC) was tested against selected bacterial strains. Results indicated that aqueous successive and crude extracts yielded the highest concentrations of polyphenols, flavonoids, and condensed tannins. In detail, HPLC-DAD analysis specifically identified significant levels of gallic acid, epicatechin, and various anthocyanins. These extracts demonstrated robust antioxidant and antimicrobial activities. This latter evidence was corroborated by the docking analyses, which revealed that chlorogenic acid and petunidin-3-glucoside exhibited high binding affinities for 2NRK and 2NZF, whereas epicatechin and pelargonidin effectively targeted 8ACR. These findings underscore the therapeutic potential of C. sativus tepals as natural bioactive agents, suggesting a promising role in overcoming antibiotic resistance and supporting their development for pharmaceutical applications. Full article

(This article belongs to the Special Issue Young Researchers in Plant Sciences)

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21 pages, 8952 KB

Open AccessArticle

Comprehensive Metabolomic–Transcriptomic Analysis of the Regulatory Effects of Armillaria mellea Source Differences on Secondary Metabolism in Gastrodia elata

by Duo Han, Chengcui Yang, Liuyuan Bao, Li Dong, Haiyan He, Peng Tang, Yongzhi Zhang, Fen Xiong, Honggao Liu and Shunqiang Yang

Biology 2026, 15(2), 196; https://doi.org/10.3390/biology15020196 - 21 Jan 2026

Viewed by 626

Abstract

Armillaria mellea (A. mellea) serves as a crucial nutritional source for Gastrodia elata (GE) growth, and its origin directly influences the GE quality and yield. This study analyzed GE symbiotic with A. mellea from different sources using metabolomics and transcriptomics. Results [...] Read more.

Armillaria mellea (A. mellea) serves as a crucial nutritional source for Gastrodia elata (GE) growth, and its origin directly influences the GE quality and yield. This study analyzed GE symbiotic with A. mellea from different sources using metabolomics and transcriptomics. Results demonstrated that Group A exhibited significant differences in metabolites and gene expression compared to other groups. Group A showed significantly higher accumulation of active components like gastrodin and p-hydroxybenzyl alcohol than others, but its yield was lower than Group B. Metabolomic analysis identified 2418 metabolites, while transcriptomic sequencing produced 964,110,904 clean reads, with 14,637 annotated transcripts. KEGG analysis revealed that Group A’s DEGs and DEMs were co-enriched in three key pathways, including flavonoid biosynthesis, phenylpropanoid biosynthesis, and plant hormone signal transduction, such as the positive regulatory roles of key genes (CHS, 4CL, MYC2) on metabolites such as hesperetin, ferulate, and jasmonic acid, respectively. The coordinated upregulation of gene–metabolite interactions in Group A GE may be closely related to the accumulation of major active components, indirectly suggesting the influence of the A. mellea source on metabolic and transcriptional response differences in GE. This study, centered on the host GE, indirectly deduces the association between A. mellea and GE, providing a theoretical basis for screening high-quality “fungus-GE” combinations. Further in-depth research and validation experiments will be conducted in conjunction with fungal omics. Full article

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16 pages, 3522 KB

Open AccessArticle

Multi-Omics Analysis Reveals the Adaptive Responses of Lycoris aurea to Arid Stress

by Mingxin Zhu, Zhaowentao Song, Yingzan Xie, Guanghua Liu and Youwei Zuo

Biology 2026, 15(2), 195; https://doi.org/10.3390/biology15020195 - 21 Jan 2026

Viewed by 439

Abstract

Understanding how plants respond to water limitation is increasingly important under accelerating climate change. Lycoris aurea, a widely distributed ornamental and medicinal bulbous plant, frequently inhabits environments with fluctuating soil moisture, yet its molecular drought-response mechanisms remain largely unexplored. In this study, [...] Read more.

Understanding how plants respond to water limitation is increasingly important under accelerating climate change. Lycoris aurea, a widely distributed ornamental and medicinal bulbous plant, frequently inhabits environments with fluctuating soil moisture, yet its molecular drought-response mechanisms remain largely unexplored. In this study, we investigated L. aurea growing under field-based, in situ soil moisture regimes, comparing low (~20% soil water content) and high (~40% soil water content) conditions. We combined soil property assessments with high-resolution transcriptomic and untargeted metabolomic profiling to characterize the adaptive responses of bulb tissues under contrasting soil water conditions. Although total nitrogen, phosphorus, and potassium levels were comparable across treatments, soil moisture, representing the primary contrasting field condition, and soil pH, a correlated environmental factor, were significantly associated with variation in gene expression and metabolite accumulation (p < 0.05, n = 3). Transcriptome analyses identified a total of 1034 differentially expressed genes enriched in pathways related to amino acid metabolism, cuticle formation, cell wall modification, and osmotic adjustment. Metabolomic analysis identified a total of 1867 differentially expressed metabolites belonging to carboxylic acids and prenol lipids, showing alterations involved in amino acids, lipids, phenolic acids, and alkaloids associated with osmoprotection, membrane stabilization, and structural reinforcement under low soil moisture. Pathway-based integration analysis highlighted four core pathways, including “alanine, aspartate and glutamate metabolism” (p = 0.00371) and “cutin, suberine and wax biosynthesis” (p = 0.00873), as central hubs linking transcriptional regulation with metabolic reconfiguration. Gene-metabolite-soil correlation networks further demonstrated that drought adaptation arises from tightly coordinated biochemical and structural adjustments rather than shifts in nutrient acquisition. Together, this species-specific study provides a comprehensive multi-omics framework for understanding drought tolerance in L. aurea, reveals key molecular targets associated with plant resilience, and offers potential targets and insights for the conservation of drought-resilient Lycoris cultivars. Full article

(This article belongs to the Special Issue Advances in Plant Multi-Omics)

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23 pages, 16063 KB

Open AccessArticle

Response Strategies of Giant Panda, Red Panda, and Forest Musk Deer to Human Disturbance in Sichuan Liziping National Nature Reserve

by Mengyi Duan, Qinlong Dai, Wei Luo, Ying Fu, Bin Feng and Hong Zhou

Biology 2026, 15(2), 194; https://doi.org/10.3390/biology15020194 - 21 Jan 2026

Viewed by 598

Abstract

The persistent expansion in the intensity and scope of human disturbance has become a key driver of global biodiversity loss, affecting wildlife behavior and population stability across multiple dimensions. As a characteristic symbiotic assemblage in the subalpine forest ecosystems of Sichuan, the giant [...] Read more.

The persistent expansion in the intensity and scope of human disturbance has become a key driver of global biodiversity loss, affecting wildlife behavior and population stability across multiple dimensions. As a characteristic symbiotic assemblage in the subalpine forest ecosystems of Sichuan, the giant panda (Ailuropoda melanoleuca), red panda (Ailurus fulgens), and forest musk deer (Moschus berezovskii) exhibit significant research value in their responses to human disturbance. However, existing studies lack systematic analysis of multiple disturbances within the same protected area. This study was conducted in the Sichuan Liziping National Nature Reserve, where infrared camera traps were deployed using a kilometer-grid layout. By integrating spatiotemporal pattern analysis and Generalized Additive Models (GAM), we investigated the characteristics of human disturbance and the response strategies of the three species within their habitats. The results show that: (1) A total of seven types of human disturbance were identified in the reserve, with the top three by frequency being cattle disturbance, goat disturbance, and walking disturbance; (2) Temporally, summer and winter were high-occurrence seasons for disturbance, with peaks around 12:00–14:00, while the giant panda exhibited a bimodal diurnal activity pattern (10:00–12:00, 14:00–16:00), the red panda peaked mainly at 8:00–10:00, and the forest musk deer preferred crepuscular and nocturnal activity—all three species displayed activity rhythms that temporally avoided peak disturbance periods; (3) Spatially, giant pandas were sparsely distributed, red pandas showed aggregated distribution, and forest musk deer exhibited a multi-core distribution, with the core distribution areas of each species spatially segregated from high-disturbance zones; (4) GAM analysis revealed that the red panda responded most significantly to disturbance, the giant panda showed marginal significance, and the forest musk deer showed no significant response. This study systematically elucidates the spatiotemporal differences in responses to multiple human disturbances among three sympatric species within the same landscape, providing a scientific basis for the management of human activities, habitat optimization, and synergistic biodiversity conservation in protected areas. It holds practical significance for promoting harmonious coexistence between human and wildlife. Full article

(This article belongs to the Section Conservation Biology and Biodiversity)

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19 pages, 5700 KB

Open AccessArticle

Physiological and Transcriptomic Responses of the Freshwater Hydrozoan Craspedacusta sowerbii to Acute Antibiotic and Cadmium Exposure

by Hailong Yan, Yu Wang, Yufan He, Jinglong Wang, Mengyao Wu, Jianing Shi, Jingjing Guo, Shang Shi, Nicola Fohrer, Jianguang Qin and Yuying Li

Biology 2026, 15(2), 193; https://doi.org/10.3390/biology15020193 - 21 Jan 2026

Viewed by 569

Abstract

Chemical contaminants are increasingly detected in freshwater environments, yet the physiological and molecular responses of many non-model freshwater invertebrates to acute chemical stress remain poorly understood. In this study, we investigated the physiological and transcriptomic responses of the freshwater hydrozoan Craspedacusta sowerbii to [...] Read more.

Chemical contaminants are increasingly detected in freshwater environments, yet the physiological and molecular responses of many non-model freshwater invertebrates to acute chemical stress remain poorly understood. In this study, we investigated the physiological and transcriptomic responses of the freshwater hydrozoan Craspedacusta sowerbii to two widespread aquatic pollutants: the antibiotic sulfamethoxazole (20 μM) and the heavy metal salt CdSO₄ (10 μM). Morphological and behavioral observations showed that sulfamethoxazole exposure led to reduced motility and body shrinkage, whereas cadmium exposure caused rapid loss of movement and complete mortality within 24 h. RNA sequencing revealed distinct transcriptional response patterns to the two stressors. Sulfamethoxazole exposure primarily induced the up-regulation of genes associated with oxidative stress, apoptosis, immune responses, and signaling pathways, suggesting an active but limited stress-adaptation response. In contrast, cadmium exposure resulted in extensive down-regulation of genes involved in metabolic pathways, cell cycle regulation, fatty acid metabolism, and anti-aging processes, suggesting severe disruption of core metabolic processes. Comparative pathway analyses identified both shared stress-related responses and pollutant-specific transcriptional signatures, with cadmium exerting markedly stronger inhibitory effects at both physiological and molecular levels. These results reveal clear thresholds of stress tolerance and response failure in C. sowerbii under chemical pollution, and highlight its ecological sensitivity to water quality deterioration. Together, these findings provide mechanistic insight into acute pollutant-induced stress responses in a freshwater Cnidarian and offer a useful reference for understanding how freshwater invertebrates respond to short-term chemical disturbances. Full article

(This article belongs to the Section Conservation Biology and Biodiversity)

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17 pages, 1238 KB

Open AccessReview

The Genetic Landscape of Androgenetic Alopecia: Current Knowledge and Future Perspectives

by Aditya K. Gupta, Daniel J. Dennis, Vasiliki Economopoulos and Vincent Piguet

Biology 2026, 15(2), 192; https://doi.org/10.3390/biology15020192 - 21 Jan 2026

Viewed by 1974

Abstract

Androgenetic alopecia (AGA) is the most common cause of progressive hair thinning in adults and has traditionally been viewed as an androgen-driven inherited condition. Genomic research now demonstrates that AGA is a complex polygenic disorder involving multiple biological pathways, including androgen signaling, hair [...] Read more.

Androgenetic alopecia (AGA) is the most common cause of progressive hair thinning in adults and has traditionally been viewed as an androgen-driven inherited condition. Genomic research now demonstrates that AGA is a complex polygenic disorder involving multiple biological pathways, including androgen signaling, hair follicle development, cell survival, and extracellular matrix remodeling. Genome-wide association studies have identified numerous susceptibility loci, revealing that follicle miniaturization arises from interacting molecular mechanisms rather than a single pathogenic process. Genetic risk and predictive value vary across populations, with many loci identified in European cohorts showing limited transferability to other ancestries, highlighting the need for more diverse genetic studies. In women, genetic studies remain underpowered, and emerging data suggest partially distinct risk architecture compared with male AGA. Pharmacogenetic findings indicate that genetic variation may influence response to commonly used therapies, although no markers are currently validated for routine clinical use. Advances in single-cell and multi-omic approaches are improving understanding of how genetic risk translates into follicular dysfunction, supporting the development of more personalized and mechanism-based treatment strategies. Full article

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28 pages, 3427 KB

Open AccessReview

Medicinal Plants for Overcoming Drug Resistance in Cervical Cancer

by Thabang Patience Marema, Kagiso Laka and Zukile Mbita

Biology 2026, 15(2), 191; https://doi.org/10.3390/biology15020191 - 20 Jan 2026

Viewed by 1223

Abstract

Drug resistance remains a significant challenge in cancer therapy, accounting for most relapses and contributing substantially to cancer-related mortality worldwide. Several molecular processes are linked to the development of resistance to anticancer drugs, with the most studied mechanisms including epigenetic changes, drug efflux, [...] Read more.

Drug resistance remains a significant challenge in cancer therapy, accounting for most relapses and contributing substantially to cancer-related mortality worldwide. Several molecular processes are linked to the development of resistance to anticancer drugs, with the most studied mechanisms including epigenetic changes, drug efflux, cell survival signalling pathways, and inactivation of anticancer drugs. Both intrinsic and acquired forms of resistance hinder tumour cell elimination, reducing treatment success. This translates to poorer patient outcomes and the need for more aggressive treatment regimens. Therefore, understanding these molecular processes is crucial for enhancing the efficacy of anticancer therapy. Medicinal plants offer potential to counter various resistance mechanisms through their diverse phytocompounds. These compounds may offer benefits including consistent availability, anticancer potency, few side effects, and minimal drug resistance. However, the bioavailability of these phytochemicals and the lack of extensive clinical trials remain key challenges. Therefore, this review provides in-depth information on the mechanisms that lead to drug resistance during cervical cancer therapy, the challenges related to phytochemical bioavailability, the current status, and future needs for clinical trials evaluating the application of medicinal plants to combat drug resistance in cancer cells. Full article

(This article belongs to the Section Medical Biology)

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10 pages, 946 KB

Open AccessArticle

Applying a Method to Estimate the Breeding and Non-Breeding Population Fractions of the Globally Threatened Red-Spectacled Amazon

by José L. Tella, Jaime Martínez, Francisco V. Dénes, Viviane Zulian, Fernando Hiraldo and Nêmora P. Prestes

Biology 2026, 15(2), 190; https://doi.org/10.3390/biology15020190 - 20 Jan 2026

Viewed by 604

Abstract

Population size estimates are essential for investigating numerous aspects of the ecology, evolution, and conservation of wildlife. However, the life cycles of many species include cryptic life stages that are difficult to detect or sample, such as the non-breeding fractions typical of many [...] Read more.

Population size estimates are essential for investigating numerous aspects of the ecology, evolution, and conservation of wildlife. However, the life cycles of many species include cryptic life stages that are difficult to detect or sample, such as the non-breeding fractions typical of many bird populations. Quantifying the proportions of breeders and non-breeders is crucial to better assess their conservation status and population trends. We propose a simple method applicable to species that show phenotypic differences between adults and juveniles. By quantifying the proportion of ages, the size of the whole population, and its productivity, the size of the non-breeding and breeding fractions can be inferred. We applied this approach to the red-spectacled amazon, Amazona pretrei, a threatened parrot endemic to the Brazilian Atlantic Forest. The entire global population aggregates in winter in a few localities to feed on the seeds of the Parana pine Araucaria angustifolia, a critically endangered tree whose range has declined >97% due to massive exploitation. From a global population of ~16,000 individuals in 2015 and ~20,000 individuals in 2017, our methodology allowed us to estimate a low proportion of juveniles (14%) and a large proportion of non-breeders (80%) within the adult population, with narrow confidence intervals. These proportions did not change between years, but the estimated number of breeding pairs increased, from ca. 1300 to 1700 pairs, in parallel with the global population increase. Our methodology, with its possible improvements to reduce uncertainty in estimates, can be applied to the long-term monitoring of this and many other species, to better understand their conservation challenges and inform effective management strategies. Full article

(This article belongs to the Special Issue Advances in Wildlife Conservation and Habitat Management in the Anthropocene)

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31 pages, 1208 KB

Open AccessReview

Melatonin as a Guardian of Mitochondria: Mechanisms and Therapeutic Potential in Neurodegenerative Diseases

by Yanyu Bao, Guoying Miao, Nannan He, Xingting Bao, Zheng Shi, Cuilan Hu, Xiongxiong Liu, Bing Wang and Chao Sun

Biology 2026, 15(2), 189; https://doi.org/10.3390/biology15020189 - 20 Jan 2026

Cited by 2 | Viewed by 3482

Abstract

Mitochondrial dysfunction is a key early pathological process in neurodegenerative diseases (NDs), leading to oxidative stress, impaired energy metabolism, and neuronal apoptosis prior to the onset of clinical symptoms. Although mitochondria represent important therapeutic targets, effective interventions targeting mitochondrial function remain limited. This [...] Read more.

Mitochondrial dysfunction is a key early pathological process in neurodegenerative diseases (NDs), leading to oxidative stress, impaired energy metabolism, and neuronal apoptosis prior to the onset of clinical symptoms. Although mitochondria represent important therapeutic targets, effective interventions targeting mitochondrial function remain limited. This review summarizes current evidence regarding the mechanisms by which melatonin protects mitochondria and evaluates its therapeutic relevance, with a primary focus on Alzheimer’s disease, Parkinson’s disease, and Huntington’s disease—the major protagonists of NDs—while briefly covering other NDs such as amyotrophic lateral sclerosis, multiple sclerosis, and prion diseases. Melatonin selectively accumulates in neuronal mitochondria and exerts neuroprotection through multiple pathways: (1) direct scavenging of reactive oxygen species (ROS); (2) transcriptional activation of antioxidant defenses via the SIRT3 and Nrf2 pathways; (3) regulation of mitochondrial dynamics through DRP1 and OPA1; and (4) promotion of PINK1- and Parkin-mediated mitophagy. Additionally, melatonin exhibits context-dependent pleiotropy: under conditions of mild mitochondrial stress, it restores mitochondrial homeostasis; under conditions of severe mitochondrial damage, it promotes pro-survival autophagy by inhibiting the PI3K/AKT/mTOR pathway, thereby conferring stage-specific therapeutic advantages. Overall, melatonin offers a sophisticated mitochondria-targeting strategy for the treatment of NDs. However, successful clinical translation requires clarification of receptor-dependent signaling pathways, development of standardized dosing strategies, and validation in large-scale randomized controlled trials. Full article

(This article belongs to the Special Issue Neurodegeneration: Pathways and Mechanisms)

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17 pages, 2249 KB

Open AccessArticle

Establishment and Polymorphism Analysis of SNP Markers in the Gynogenic Blunt Snout Bream

by Ping Wu, Yuhuan Wei, Siyao Weng, Mingguang Hu, Jiaxing Li, Wenxuan Tang, Lei Zhang, Qinbo Qin, Ting Yi, Wuhui Li, Min Tao, Chun Zhang, Qizhi Liu and Shaojun Liu

Biology 2026, 15(2), 188; https://doi.org/10.3390/biology15020188 - 20 Jan 2026

Viewed by 516

Abstract

The blunt snout bream (Megalobrama amblycephala, BSB) is a freshwater economic fish with Chinese characteristics, and its genetic characteristics have unique value for studying fish evolution. The gynogenetic blunt snout bream (GBSB) obtained through distant hybridization between cross-order species, which showed [...] Read more.

The blunt snout bream (Megalobrama amblycephala, BSB) is a freshwater economic fish with Chinese characteristics, and its genetic characteristics have unique value for studying fish evolution. The gynogenetic blunt snout bream (GBSB) obtained through distant hybridization between cross-order species, which showed a faster growth rate than the female parent, but its appearance is similar to that of BSB and is difficult to distinguish. Therefore, by comparing the transcriptome sequencing data of BSB and GBSB (SRA number: PRJNA893089, not released yet), we identified 30 SNPs associated with genes related to muscle growth, protein synthesis, and glycolysis that are unique to GBSB. Through multi-sample PCR detection and sequencing analysis, 16 SNPs with stable differences in GBSB and BSB were obtained. The polymorphism analysis of 16 SNP sites showed that 9 SNP sites were polymorphic in GBSB, which could be used to identify GBSB and its female parent, BSB. In addition, the 9 SNP sites are located in the myoz1a (myozenin 1a) gene, which is related to muscle development, and may provide insights for further study of muscle growth regulation. Therefore, this study provides candidate marker resources for GBSB germplasm resource identification and molecular marker-assisted breeding, which is beneficial for improving the efficiency and reliability of selection and breeding work. Full article

(This article belongs to the Special Issue Sexual Determination and Reproductive Regulation in Aquatic Organisms)

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15 pages, 3124 KB

Open AccessArticle

Force-Dependent Presence of Senescent Cells Expressing Vascular Endothelial Growth Factor During Orthodontic Tooth Movement

by Yohei Morihana, Masato Nakagawa, Yue Zhou, Hidetoshi Morikuni, Zi Deng, Yoshitomo Honda and Aki Nishiura

Biology 2026, 15(2), 187; https://doi.org/10.3390/biology15020187 - 19 Jan 2026

Viewed by 420

Abstract

Orthodontic force magnitude influences angiogenesis during orthodontic tooth movement (OTM); however, the role of senescent cells remains largely unclear. This study investigated the localization of senescent cells and their expression of vascular endothelial growth factor (VEGF) during angiogenesis using a rat horizontal OTM [...] Read more.

Orthodontic force magnitude influences angiogenesis during orthodontic tooth movement (OTM); however, the role of senescent cells remains largely unclear. This study investigated the localization of senescent cells and their expression of vascular endothelial growth factor (VEGF) during angiogenesis using a rat horizontal OTM model with different force magnitudes. Nickel–titanium coil springs exerting 60 g or 180 g of orthodontic force were applied to the maxillary first molar of 15-week-old male Sprague–Dawley rats; untreated rats served as controls. Tooth movement was evaluated by stereomicroscopy and micro-computed tomography. Senescent cells (p21, p16) and angiogenesis (CD31 and VEGF) were evaluated by multiplex immunofluorescence. Tooth movement was observed under both the 60 g and 180 g conditions. The 60 g group showed increased cellularity, vascular density, and VEGF expression, suggesting an optimal mechanical force. In contrast, the 180 g group reduced cellularity and angiogenesis, consistent with excessive force. Senescent cells were more abundant in the 60 g group, with over 40% expressing VEGF. These findings suggest that force magnitude influences the presence of VEGF⁺ senescent cells, which may be associated with the angiogenic process in OTM. This work provides insights into the mechanisms underlying optimal force in orthodontic treatment. Full article

(This article belongs to the Special Issue Cellular Senescence in Development, Regeneration, Aging, and Cancer)

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52 pages, 19994 KB

Open AccessArticle

Altered Stereostructures of the DNA-Binding Domains of Variant Mating Proteins of Ophiocordyceps sinensis and the Wild Insect–Fungal Complex

by Xiu-Zhang Li, Yu-Ling Li, Wei Liu and Jia-Shi Zhu

Biology 2026, 15(2), 186; https://doi.org/10.3390/biology15020186 - 19 Jan 2026

Viewed by 474

Abstract

The MATα_HMGbox and HMG-box_ROX1-like domains of the MAT1-1-1 and MAT1-2-1 proteins, respectively, play essential roles in DNA binding and the subsequent regulation of gene transcription, controlling Ophiocordyceps sinensis sexual reproduction. Alternative splicing, differential occurrence and transcription of the MAT1-1-1 and MAT1-2-1 genes have [...] Read more.

The MATα_HMGbox and HMG-box_ROX1-like domains of the MAT1-1-1 and MAT1-2-1 proteins, respectively, play essential roles in DNA binding and the subsequent regulation of gene transcription, controlling Ophiocordyceps sinensis sexual reproduction. Alternative splicing, differential occurrence and transcription of the MAT1-1-1 and MAT1-2-1 genes have been demonstrated in Hirsutella sinensis (GC-biased Genotype #1 of the 17 O. sinensis genotypes), suggesting self-sterility under heterothallic or hybrid outcrossing. In this study, the MATα_HMGbox domains of MAT1-1-1 proteins in wild-type Cordyceps sinensis isolates were shown to cluster into 5 clades in the Bayesian clustering tree and belong to diverse stereostructure morphs under 19 AlphaFold codes. The HMG-box_ROX1-like domains of MAT1-2-1 proteins, on the other hand, were shown to cluster into 2 branched Bayesian clades and belong to stereostructure morphs under 25 AlphaFold codes. Correlation analysis revealed that 1–3 amino acid substitutions in the DNA-binding domains of the mating proteins resulted in altered hydrophobicity and secondary and tertiary structures of the DNA-binding domains of the proteins, especially altered stereostructures of the hydrophobic cores formed by 3 critical α- helices within the functional domains of the proteins. Fungal origin analysis revealed possible heterospecific fungal sources of mating proteins with stereostructure variations in wild-type C. sinensis isolates, suggesting that alterations in DNA binding function and the subsequent regulation of mating-related gene transcription are involved in ensuring the accuracy and genetic diversity of heterothallic and hybrid reproduction of O. sinensis during the lifecycle of the C. sinensis insect–fungal complex. Full article

(This article belongs to the Section Biochemistry and Molecular Biology)

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15 pages, 3854 KB

Open AccessArticle

Characteristics and Phylogenetic Considerations of the Newly Sequenced Mitochondrial Genome of Teratoscincus scincus (Gekkota: Sphaerodactylidae)

by Zhiqiang Ge, Zhengyu Zhang, Zelu Mu and Linqiang Zhong

Biology 2026, 15(2), 185; https://doi.org/10.3390/biology15020185 - 19 Jan 2026

Viewed by 461

Abstract

Sphaerodactylidae play a crucial role in ecosystems, possessing significant ecological, scientific, and conservation value. They contribute to pest control and the maintenance of ecological balance, and also provide abundant materials for research in evolutionary biology and biodiversity. To refine the phylogenetic position of [...] Read more.

Sphaerodactylidae play a crucial role in ecosystems, possessing significant ecological, scientific, and conservation value. They contribute to pest control and the maintenance of ecological balance, and also provide abundant materials for research in evolutionary biology and biodiversity. To refine the phylogenetic position of Teratoscincus scincus within the Sphaerodactylidae using mitogenomic data, this study sequenced the complete mitochondrial genome of T. scincus using the Illumina NovaSeq Xplus platform, and subsequently performed assembly, annotation, and analysis. The phylogenetic relationships of T. scincus within the Sphaerodactylidae were analyzed using 13 protein-coding genes (PCGs) from the mitochondrial genome via Bayesian inference (BI) and maximum likelihood (ML) methods. The complete mitochondrial genome of T. scincus is 16,943 bp in length and consists of 13 PCGs, 22 tRNA genes, 2 rRNA genes, and 1 control region (D-loop). The base composition shows a distinct AT preference, with the highest A + T content (56.3%) found in the PCGs region. A phylogenetic tree was constructed based on the amino acid sequences of 13 PCGs from the mitochondrial genomes of nine Sphaerodactylidae species retrieved from GenBank and the newly sequenced T. scincus generated in this study. The results confirm that T. scincus belongs to the genus Teratoscincus within the family Sphaerodactylidae. Phylogenetic analysis reveals that T. scincus and Teratoscincus keyserlingii cluster into a monophyletic group, suggesting a close phylogenetic relationship. Additionally, the phylogenetic tree provides new molecular evidence for understanding the formation mechanism of Sphaerodactylidae diversity. This study not only enriches the mitochondrial genome database of Sphaerodactylidae but also lays an important foundation for subsequent research on the adaptive evolution and conservation biology of T. scincus. Full article

(This article belongs to the Section Zoology)

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23 pages, 3628 KB

Open AccessArticle

Environmental Drivers and Long-Term Dynamics of Copepod Communities in the Black Sea: Contrasts Between Warm and Cold Periods

by George-Emanuel Harcota, Elena Bisinicu, Luminita Lazar, Florin Timofte and Geta Rîșnoveanu

Biology 2026, 15(2), 184; https://doi.org/10.3390/biology15020184 - 19 Jan 2026

Viewed by 534

Abstract

Copepods are key components of marine food webs, linking primary producers such as microalgae to higher trophic levels, including many fish species. This study investigates long-term changes in the composition, density, and biomass of copepod communities along the Romanian coast of the Black [...] Read more.

Copepods are key components of marine food webs, linking primary producers such as microalgae to higher trophic levels, including many fish species. This study investigates long-term changes in the composition, density, and biomass of copepod communities along the Romanian coast of the Black Sea over six decades (1956–2015), based on historical records and recent monitoring from 18 sampling stations. Mean copepod density declined markedly over the study period, particularly during the cold season, decreasing from values exceeding 1000 ind/m³ in the 1960s to <300 ind/m³ after 2000, while biomass showed weaker but comparable long-term fluctuations. Seasonal variability was pronounced, with significantly higher densities and biomass during the warm season. Generalised Additive Models (GAMs) explained up to 40–55% of the variance in copepod density and biomass, depending on the season. During the warm season, phosphate exerted a positive effect on copepod abundance, consistent with bottom-up control via phytoplankton productivity, whereas during the cold season, temperature showed a positive effect and salinity a negative effect, indicating stronger physical control of copepod persistence. Species composition shifted over time, with a reduction in constant species and an increase in rare or accidental taxa in later decades. These results indicate that climate variability and anthropogenic pressures have reshaped copepod communities, with potential consequences for food-web efficiency and ecosystem resilience in the Black Sea. Full article

(This article belongs to the Section Marine and Freshwater Biology)

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16 pages, 1998 KB

Open AccessArticle

Identification and Characterization of Botryosphaeria dothidea Associated with Sweet Cherry (Prunus avium L.) Branch Dieback Disease in Greenhouses of Liaoning, China

by Qidong Dai, Qijing Zhang, Yao Chen, Feng Cai, Mingli He and Jiayin Ai

Biology 2026, 15(2), 183; https://doi.org/10.3390/biology15020183 - 19 Jan 2026

Viewed by 694

Abstract

Between 2022 and 2024, a severe branch dieback disease was observed affecting over 6% of sweet cherry trees of the ‘Tieton’ cultivar in commercial greenhouses in southern Liaoning Province, China. Symptoms primarily occurred at the top of young branches. At the early stage [...] Read more.

Between 2022 and 2024, a severe branch dieback disease was observed affecting over 6% of sweet cherry trees of the ‘Tieton’ cultivar in commercial greenhouses in southern Liaoning Province, China. Symptoms primarily occurred at the top of young branches. At the early stage of disease onset, the lesions appeared as dark brown, irregularly shaped areas with a moist surface; as the disease progressed, these lesions turned dry and rotten, leading to tree decline symptoms in sweet cherry trees. Disease diagnosis was carried out in sweet cherry greenhouses across Liaoning Province, where 24 diseased samples were collected and 14 fungal isolates were obtained therefrom. Based on morphological traits, cultural characteristics, and multi-locus phylogenetic analyses of the internal transcribed spacer (ITS) region, beta-tubulin (TUB2) gene, and translation elongation factor 1-α (TEF1) gene, these isolates were identified as Botryosphaeria dothidea. Two representative isolates, namely zdcy-1 and zdcy-2, were selected for pathogenicity assays. Both mycelial plug and spore suspension inoculation methods confirmed the pathogenicity of the pathogen. The biological characteristic assays revealed that the optimal temperature range for the pathogen’s mycelial growth on PDA medium was 25–28 °C, and the optimal pH range was 6.0–8.0. This study improves the understanding of branch dieback disease in sweet cherry orchards in China, enriches the knowledge regarding the geographical distribution, host range, and infection sites of the pathogen, and provides novel insights for the management of sweet cherry diseases. Full article

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15 pages, 2462 KB

Open AccessArticle

The Effects of Different Substrates in Pond Net Cages on the Succession of Periphyton and the Seedling Protection of Sea Cucumber Apostichopus japonicus

by Yanqing Wu, Liming Liu, Rongbin Du, Wengang Xu, Bo Qin, Na Ying and Bianbian Zhang

Biology 2026, 15(2), 182; https://doi.org/10.3390/biology15020182 - 19 Jan 2026

Viewed by 410

Abstract

With the industry development of sea cucumber Apostichopus japonicus aquaculture, the indoor high cost and low survival rate have become serious problems. Therefore, it is necessary to optimize substrate selection for seedling protection in outdoor pond net cages. This study explores the succession [...] Read more.

With the industry development of sea cucumber Apostichopus japonicus aquaculture, the indoor high cost and low survival rate have become serious problems. Therefore, it is necessary to optimize substrate selection for seedling protection in outdoor pond net cages. This study explores the succession of periphyton on the different substrate surface types, including a curvimurate net (CU), nylon mesh (NM), and ground cages (including a ground cage net (CN) and ground cage plate (CP)), and their effects on the seedling protection of sea cucumbers. In addition, we monitored the substrates’ dry weight, chlorophyll-a, and the community composition of substrates, alongside seedling growth, yield, and survival rate. The results show that a total of 7 phyla, 23 genera, and 31 species were detected on the substrates, with diatoms dominating (19 species) and Chlorophyta (4 species) being the main species. The CU had the highest total number of alga species attached, significantly higher than the other substrates in week 13 (p < 0.05). In week 9, the diatom density dropped to its lowest point, and, after September, it rose with the decrease in water temperature. In terms of dry weight with and without ash, CP increased rapidly in the early stage, with NM, CU, and CP being significantly higher than CN in week 13 (p < 0.05). The chlorophyll-a content showed a decreasing–increasing–decreasing trend, with CU reaching 3.62 ± 0.48 μg/cm² in the 13th week, significantly higher than other substrates (p < 0.05). Finally, the A. japonicus survival rate and yield in the CU group at week 12 were significantly higher than those in the NM and ground cage groups (p < 0.05). At week 17, the average weight, yield, and survival rate in the CU group were still optimal, with the yield 5.76 times that in the initial dosage. These results suggest that the CU has a suitable mesh size, has good permeability, and may stably support sediment, which is conducive to the growth of benthic diatoms. In addition, it can provide sufficient natural feed and a good habitat environment and is the preferred substrate for A. japonicus seedling protection in outdoor pond net cages. Full article

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15 pages, 2365 KB

Open AccessArticle

Mitochondrial Adaptations Underlying Tetraploidization in Human Cancer, Fungal, and Yeast Models

by Mohamed Jemaà, Ameni Bedoui, Nihel Ammous, Ali Gargouri and Mohamed Guerfali

Biology 2026, 15(2), 181; https://doi.org/10.3390/biology15020181 - 19 Jan 2026

Viewed by 1067

Abstract

Whole-genome duplication, or tetraploidization, occurs in cells, tissues, or entire organisms. In human cancers, tetraploidization promotes aneuploidy and genomic instability, accelerating tumor progression, metastasis, and drug resistance. These adaptations demand metabolic rewiring, including mitochondrial plasticity. Here, we investigate the relationship between mitochondrial quantity/activity, [...] Read more.

Whole-genome duplication, or tetraploidization, occurs in cells, tissues, or entire organisms. In human cancers, tetraploidization promotes aneuploidy and genomic instability, accelerating tumor progression, metastasis, and drug resistance. These adaptations demand metabolic rewiring, including mitochondrial plasticity. Here, we investigate the relationship between mitochondrial quantity/activity, including the mitochondrial transmembrane potential, the intracellular calcium, and the oxidative stress in diploid versus tetraploid cancer cells (colon, sarcoma, liver) and fungal and yeast models (C. albicans diploid/tetraploid strains; S. cerevisiae haploid/diploid/tetraploid strains). We demonstrate that tetraploid cells, whether from human carcinomas or yeast, exhibit consistently enlarged cell size, elevated mitochondrial content, and heightened metabolic activity compared to diploids. Our findings underscore mitochondrial adaptation as a hallmark of tetraploidization, offering novel therapeutic targets for chromosomally unstable tumors. Full article

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17 pages, 2302 KB

Open AccessArticle

Mycorrhizal Inoculation Enhances Drought Tolerance in Potato (Solanum tuberosum L.) by Modulating Antioxidant Enzyme Activity and Related Gene Expression

by Souad Ettlili, Ricardo Aroca, Naceur Djebali, Sonia Labidi and Faysal Ben Jeddi

Biology 2026, 15(2), 180; https://doi.org/10.3390/biology15020180 - 19 Jan 2026

Cited by 1 | Viewed by 427

Abstract

Potato (Solanum tuberosum L.) is one of the most widely cultivated crops in the world; however, drought is a major constraint to its productivity. Arbuscular mycorrhizal fungi (AMF) have been shown to improve plant resistance under conditions of water stress. However, their [...] Read more.

Potato (Solanum tuberosum L.) is one of the most widely cultivated crops in the world; however, drought is a major constraint to its productivity. Arbuscular mycorrhizal fungi (AMF) have been shown to improve plant resistance under conditions of water stress. However, their effects on potato plants are poorly studied. The purpose of this study was to evaluate the potential of two AMF inocula (two different strains of the AMF species Rhizophagus irregularis with different origin: Southern Spain MI₁ and Tunisia MI₂) on potato tolerance to drought stress through the determination of growth parameters, photosynthetic parameters, and antioxidant systems, under well-watered (WW; field capacity) and drought stress (DS; 50% of field capacity) conditions. Therefore, the experiment consisted of two factors: AMF strain and watering regime. The results showed that under drought stress conditions, AMF inoculation considerably stimulated photosynthetic performance as compared with non-inoculated controls. Moreover, leaf superoxide dismutase (SOD) and catalase (CAT) activities of inoculated plants were higher in WW conditions, but unchanged in DS conditions. Inoculated plants had significantly higher ascorbate peroxidase (APX) and glutathione reductase (GR) activities than non-inoculated plants under DS conditions. Also, expression of some antioxidant enzyme genes were upregulated by inoculation. Lipid peroxidation content of inoculated plants was lower than that of non-inoculated. Furthermore, there was a high positive correlation between mycorrhizal root colonization (RC) and almost all the measured parameters. The results of this study indicated that AMF inoculation could enhance potato plant tolerance to water stress through the induction of antioxidant mechanisms implicated in scavenging oxygen-free radicals. Full article

(This article belongs to the Section Plant Science)

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16 pages, 3407 KB

Open AccessArticle

Deciphering the Regulatory Network of Tail Fat Deposition in Large- and Small-Tailed Han Sheep Through Transcriptome and MicroRNAome Profiling

by Guan Wang, Liming Tian, Shuhong Zhang, Zhaohua He, Fangfang Zhao, Menghan Chang, Wei Han, Dandan Ye, Jingyi Gao, Shaobin Li and Guangli Yang

Biology 2026, 15(2), 179; https://doi.org/10.3390/biology15020179 - 19 Jan 2026

Cited by 1 | Viewed by 505

Abstract

Tail fat deposition constitutes a distinctive adaptive phenotype in sheep. The Large-tailed Han (LTH) and Small-tailed Han (STH) breeds display pronounced divergence in tail fat storage, offering an ideal model for elucidating lipid metabolism regulation. Integrated sRNA-Seq and RNA-Seq analysis identified 521 differentially [...] Read more.

Tail fat deposition constitutes a distinctive adaptive phenotype in sheep. The Large-tailed Han (LTH) and Small-tailed Han (STH) breeds display pronounced divergence in tail fat storage, offering an ideal model for elucidating lipid metabolism regulation. Integrated sRNA-Seq and RNA-Seq analysis identified 521 differentially expressed genes and 144 miRNAs, which were significantly enriched in lipid metabolism pathways, including fatty acid metabolism and PPAR signaling. Key candidate genes (ADIRF, LPL, ACSL5) were highlighted as pivotal regulators. Additionally, 23 miRNA-mRNA regulatory networks were constructed, revealing complex interaction patterns from ‘one-to-one’ to ‘many-to-one’ relationships. For example, six miRNAs collectively targeted LTA4H. Collectively, this study advances understanding of the genetic network underlying tail fat deposition and provides candidate targets for modulating lipid metabolism. Functional validation is warranted to delineate causal mechanisms. Full article

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17 pages, 4876 KB

Open AccessArticle

Morphological and Molecular Evidence Revealed New Species in Mactra antiquata Sensu Lato

by Fei Teng, Peizhen Ma, Yang Zhang, Jiazhen Zhang, Yuan Zhang, Jie Liu and Haiyan Wang

Biology 2026, 15(2), 178; https://doi.org/10.3390/biology15020178 - 18 Jan 2026

Viewed by 519

Abstract

Mactra antiquata sensu lato, a commercially important clam species in China, exhibits remarkable morphological and molecular diversity, which has led to the proposal of cryptic species within this complex. In the present study, specimens of M. antiquata sensu lato were collected from four [...] Read more.

Mactra antiquata sensu lato, a commercially important clam species in China, exhibits remarkable morphological and molecular diversity, which has led to the proposal of cryptic species within this complex. In the present study, specimens of M. antiquata sensu lato were collected from four coastal provinces (Shandong, Guangdong, Guangxi, and Hainan) of China, and an integrated comparative analysis was performed based on morphological traits and partial sequences of two mitochondrial genes (cytochrome c oxidase subunit I, COI; and 16S rRNA). Our results revealed that M. antiquata sensu lato could be clearly delineated into two distinct clades: the N-group (comprising specimens collected from Shandong in this study) and the S-group (including specimens collected from Guangdong, Guangxi, and Hainan), with significant intergroup differences. Morphologically, S-group individuals possessed relatively narrower shells (mean shell width-to-length ratio = 0.465) and shorter shells (mean shell height-to-length ratio = 0.781) compared to N-group conspecifics. Additionally, the pallial sinus of S-group clams extended directly toward the anterior adductor muscle, whereas that of N-group clams pointed to the region below the anterior adductor muscle. Furthermore, the escutcheon of N-group individuals was considerably more slender than that of the S-group. Phylogenetic trees and haplotype networks constructed based on both partial COI and 16S rRNA sequences further confirmed a deep genetic divergence between the two groups, with Kimura 2-parameter distances of 0.158 for COI and 0.084 for 16S rRNA. Collectively, these morphological and molecular lines of evidence strongly support the existence of cryptic species within M. antiquata sensu lato. By comparing the morphological characteristics of specimens in this study with the original description of M. antiquata, we herein propose that the S-group represents a new species, which we named M. haiboensis sp. nov. Our findings provide a scientific basis for the targeted conservation and further research of both M. antiquata and M. haiboensis sp. nov. Full article

(This article belongs to the Section Zoology)

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28 pages, 435 KB

Open AccessReview

Advances in Audio Classification and Artificial Intelligence for Respiratory Health and Welfare Monitoring in Swine

by Md Sharifuzzaman, Hong-Seok Mun, Eddiemar B. Lagua, Md Kamrul Hasan, Jin-Gu Kang, Young-Hwa Kim, Ahsan Mehtab, Hae-Rang Park and Chul-Ju Yang

Biology 2026, 15(2), 177; https://doi.org/10.3390/biology15020177 - 18 Jan 2026

Cited by 2 | Viewed by 1823

Abstract

Respiratory diseases remain one of the most significant health challenges in modern swine production, leading to substantial economic losses, compromised animal welfare, and increased antimicrobial use. In recent years, advances in artificial intelligence (AI), particularly machine learning and deep learning, have enabled the [...] Read more.

Respiratory diseases remain one of the most significant health challenges in modern swine production, leading to substantial economic losses, compromised animal welfare, and increased antimicrobial use. In recent years, advances in artificial intelligence (AI), particularly machine learning and deep learning, have enabled the development of non-invasive, continuous monitoring systems based on pig vocalizations. Among these, audio-based technologies have emerged as especially promising tools for early detection and monitoring of respiratory disorders under real farm conditions. This review provides a comprehensive synthesis of AI-driven audio classification approaches applied to pig farming, with focus on respiratory health and welfare monitoring. First, the biological and acoustic foundations of pig vocalizations and their relevance to health and welfare assessment are outlined. The review then systematically examines sound acquisition technologies, feature engineering strategies, machine learning and deep learning models, and evaluation methodologies reported in the literature. Commercially available systems and recent advances in real-time, edge, and on-farm deployment are also discussed. Finally, key challenges related to data scarcity, generalization, environmental noise, and practical deployment are identified, and emerging opportunities for future research including multimodal sensing, standardized datasets, and explainable AI are highlighted. This review aims to provide researchers, engineers, and industry stakeholders with a consolidated reference to guide the development and adoption of robust AI-based acoustic monitoring systems for respiratory health management in swine. Full article

(This article belongs to the Section Zoology)

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