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Journal of Fungi, Volume 4, Issue 1

2018 March - 40 articles

Cover Story: Over the past two decades, Candida biofilm research has evolved, driven by classical molecular approaches that have allowed for a comprehensive understanding of how these complex communities develop. However, wild type clinical strains often behave differently from classical laboratory strains, with unpredictable behaviours in animal model and human infections. This review evaluates current literature with respect to clinical outcomes associated with biofilm formation, as well as the pre-disposing factors that influence biofilm heterogeneity. View this paper
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Articles (40)

  • Tutorial
  • Open Access
300 Citations
21,808 Views
28 Pages

FungiDB: An Integrated Bioinformatic Resource for Fungi and Oomycetes

  • Evelina Y. Basenko,
  • Jane A. Pulman,
  • Achchuthan Shanmugasundram,
  • Omar S. Harb and ,
  • Kathryn Crouch,
  • David Starns,
  • Susanne Warrenfeltz,
  • Cristina Aurrecoechea,
  • Christian J. Stoeckert and
  • Christiane Hertz-Fowler
  • + 7 authors+ 2 authors

20 March 2018

FungiDB (fungidb.org) is a free online resource for data mining and functional genomics analysis for fungal and oomycete species. FungiDB is part of the Eukaryotic Pathogen Genomics Database Resource (EuPathDB, eupathdb.org) platform that integrates...

(This article belongs to the Special Issue Genomic Data in Pathogenic Fungi)
  • Article
  • Open Access
28 Citations
7,299 Views
8 Pages

Estimation of the Burden of Serious Human Fungal Infections in Malaysia

  • Rukumani Devi Velayuthan,
  • Chandramathi Samudi,
  • Harvinder Kaur Lakhbeer Singh,
  • Kee Peng Ng and ,
  • Esaki M. Shankar and
  • David W. Denning
  • + 1 author+ 0 author

19 March 2018

Fungal infections (mycoses) are likely to occur more frequently as ever-increasingly sophisticated healthcare systems create greater risk factors. There is a paucity of systematic data on the incidence and prevalence of human fungal infections in Mal...

(This article belongs to the Special Issue Fungal Burden in Different Countries)
  • Article
  • Open Access
11 Citations
5,292 Views
8 Pages

Estimating the Burden of Serious Fungal Infections in Uruguay

  • Marina Macedo-Viñas and
  • David W. Denning

18 March 2018

We aimed to estimate for the first time the burden of fungal infections in Uruguay. Data on population characteristics and underlying conditions were extracted from the National Statistics Institute, the World Bank, national registries, and published...

(This article belongs to the Special Issue Fungal Burden in Different Countries)
  • Review
  • Open Access
18 Citations
4,856 Views
8 Pages

15 March 2018

The fungal pathogens Cryptococcus neoformans and Cryptococcus gattii can cause life-threatening infections in immune compromised and immune competent hosts. These pathogens enter the host via inhalation, and respiratory tract innate immune cells such...

(This article belongs to the Special Issue Cryptococcus and Cryptococcosis)
  • Article
  • Open Access
14 Citations
6,138 Views
9 Pages

Burden of Severe Fungal Infections in Burkina Faso

  • Sanata Bamba,
  • Adama Zida,
  • Ibrahim Sangaré,
  • Mamoudou Cissé and ,
  • David W. Denning and
  • Christophe Hennequin
  • + 1 author+ 0 author

11 March 2018

Because of the limited access to more powerful diagnostic tools, there is a paucity of data regarding the burden of fungal infections in Burkina Faso. The aim of this study was to estimate the incidence and prevalence of serious fungal infections in...

(This article belongs to the Special Issue Fungal Burden in Different Countries)
  • Article
  • Open Access
10 Citations
5,026 Views
7 Pages

An Estimate of Severe and Chronic Fungal Diseases in the Republic of Kazakhstan

  • Vadim M. Kemaykin,
  • Nariman B. Tabinbaev,
  • Mahira S. Khudaibergenova,
  • Anastasia A. Olifirovich and ,
  • Layzzat M. Abdrakhmanova,
  • David W. Denning and
  • Nikolai Klimko
  • + 2 authors+ 0 author

8 March 2018

Our work aimed to generate a preliminary estimation of severe and chronic fungal diseases in the Republic of Kazakhstan with a model proposed by LIFE (Leading International Fungal Education). Calculations were carried out on data from 2015. Published...

(This article belongs to the Special Issue Fungal Burden in Different Countries)
  • Review
  • Open Access
78 Citations
12,718 Views
22 Pages

7 March 2018

Cryptococcus species, the etiological agents of cryptococcosis, are encapsulated fungal yeasts that predominantly cause disease in immunocompromised individuals, and are responsible for 15% of AIDS-related deaths worldwide. Exposure follows the inhal...

(This article belongs to the Special Issue Cryptococcus and Cryptococcosis)
  • Article
  • Open Access
24 Citations
6,677 Views
7 Pages

The Burden of Fungal Diseases in Romania

  • Mihai Mareș,
  • Valentina Ruxandra Moroti-Constantinescu and
  • David W. Denning

1 March 2018

Objective: To estimate for the first time the burden of fungal infections in Romania. Methods: Data derived from the World Health Organization (WHO), National Institute of Statistics, Romanian public health agencies and non-profit health organization...

(This article belongs to the Special Issue Fungal Burden in Different Countries)
  • Article
  • Open Access
36 Citations
7,382 Views
14 Pages

Cryptococcosis in Colombia: Compilation and Analysis of Data from Laboratory-Based Surveillance

  • Patricia Escandón,
  • Jairo Lizarazo,
  • Clara Inés Agudelo and
  • Elizabeth Castañeda

1 March 2018

The passive and voluntary surveillance of cryptococcosis in Colombia since 1997 has seen an increasing participating rate, revealing its importance to both in immunosuppressed and immunocompetent people. The present work details the national data gat...

(This article belongs to the Special Issue Cryptococcus and Cryptococcosis)
  • Article
  • Open Access
16 Citations
5,265 Views
15 Pages

Antifungal Potential of Host Defense Peptide Mimetics in a Mouse Model of Disseminated Candidiasis

  • Mobaswar Hossain Chowdhury,
  • Lisa Kathleen Ryan,
  • Kartikeya Cherabuddi,
  • Katie B. Freeman and ,
  • Damian G. Weaver,
  • Jeffry C. Pelletier,
  • Richard W. Scott and
  • Gill Diamond
  • + 3 authors+ 0 author

27 February 2018

Invasive candidiasis caused by Candida albicans and non-albicans Candida (NAC) present a serious disease threat. Although the echinocandins are recommended as the first line of antifungal drug class, resistance to these agents is beginning to emerge,...

  • Article
  • Open Access
10 Citations
5,809 Views
8 Pages

An Estimate of the Burden of Fungal Disease in Norway

  • Ingvild Nordøy,
  • Liv Hesstvedt,
  • Cecilie Torp Andersen,
  • Haima Mylvaganam and ,
  • Nicola I. Kols,
  • Birgit M. Falch,
  • Ståle Tofteland,
  • Fredrik Müller and
  • David W. Denning
  • + 4 authors+ 0 author

21 February 2018

The aim of this study was to examine the burden of fungal disease in Norway, contributing to a worldwide effort to improve awareness of the needs for better diagnosis and treatment of such infections. We used national registers and actual data from t...

(This article belongs to the Special Issue Fungal Burden in Different Countries)
  • Review
  • Open Access
67 Citations
11,007 Views
14 Pages

20 February 2018

The phospholipids phosphatidylserine (PS) and phosphatidylethanolamine (PE) play important roles in the virulence of Candida albicans and loss of PS synthesis or synthesis of PE from PS (PS decarboxylase) severely compromises virulence in C. albicans...

(This article belongs to the Special Issue Candida and Candidiasis)
  • Review
  • Open Access
81 Citations
10,518 Views
12 Pages

19 February 2018

Blood cultures are positive for Candida species in < 50% and < 20% of hematogenously disseminated and intra-abdominal candidiasis, respectively. Non-culture tests such as mannan, anti-mannan antibody, Candida albicans germ tube antibody (CAGTA)...

(This article belongs to the Special Issue Candida and Candidiasis)
  • Article
  • Open Access
7 Citations
4,732 Views
13 Pages

18 February 2018

Cryptococcus neoformans successfully replicates in low glucose in infected patients. In the serotype A strain, H99, growth in this condition prolongs lifespan regulated by SIR2, and can be modulated with SIR2-specific drugs. Previous studies show tha...

(This article belongs to the Special Issue Cryptococcus and Cryptococcosis)
  • Review
  • Open Access
62 Citations
13,457 Views
17 Pages

17 February 2018

Cryptococcus neoformans is a common environmental saprophyte and human fungal pathogen that primarily causes disease in immunocompromised individuals. Similar to many environmentally acquired human fungal pathogens, C. neoformans initiates infection...

(This article belongs to the Special Issue Cryptococcus and Cryptococcosis)
  • Review
  • Open Access
84 Citations
9,506 Views
11 Pages

11 February 2018

The development of endophyte inoculants for agricultural crops has been bedevilled by the twin problems of a lack of reliability and consistency, with a consequent lack of belief among end users in the efficacy of such treatments. We have developed a...

(This article belongs to the Special Issue Fungal Endophytes in Plants)
  • Review
  • Open Access
87 Citations
13,700 Views
14 Pages

Candida–Epithelial Interactions

  • Jonathan P. Richardson,
  • Jemima Ho and
  • Julian R. Naglik

8 February 2018

A plethora of intricate and dynamic molecular interactions occur between microbes and the epithelial cells that form the mucosal surfaces of the human body. Fungi, particularly species of Candida, are commensal members of our microbiota, continuously...

(This article belongs to the Special Issue Mucosal Fungal Infections)
  • Article
  • Open Access
1 Citations
4,072 Views
13 Pages

8 February 2018

Fungi, particularly molds that are cosmopolitan in soils, are frequent etiologic agents of opportunistic mycoses. Members of the Fusarium solani and Fusarium oxysporum species complexes are the most commonly implicated etiologic agents of opportunist...

  • Article
  • Open Access
36 Citations
6,986 Views
15 Pages

The Plant Defensin NaD1 Enters the Cytoplasm of Candida albicans via Endocytosis

  • Brigitte M. E. Hayes,
  • Mark R. Bleackley,
  • Marilyn A. Anderson and
  • Nicole L. Van der Weerden

6 February 2018

Antimicrobial peptides are widespread in nature and are produced by many organisms as a first line of defence against pathogens. These peptides have a broad range of biological activities, such as antibacterial or antifungal activities and act with v...

  • Review
  • Open Access
58 Citations
11,203 Views
10 Pages

Experimental In Vivo Models of Candidiasis

  • Esther Segal and
  • Michael Frenkel

6 February 2018

Candidiasis is a multifaceted fungal disease including mucosal-cutaneous, visceral, and disseminated infections caused by yeast species of the genus Candida. Candida infections are among the most common human mycoses. Candida species are the third to...

(This article belongs to the Special Issue Candida and Candidiasis)
  • Article
  • Open Access
24 Citations
9,435 Views
14 Pages

Glycosylphosphatidylinositol Anchors from Galactomannan and GPI-Anchored Protein Are Synthesized by Distinct Pathways in Aspergillus fumigatus

  • Jizhou Li,
  • Isabelle Mouyna,
  • Christine Henry,
  • Frédérique Moyrand and ,
  • Christian Malosse,
  • Julia Chamot-Rooke,
  • Guilhem Janbon,
  • Jean-Paul Latgé and
  • Thierry Fontaine
  • + 4 authors+ 0 author

2 February 2018

Glycosylphosphatidylinositols (GPIs) are lipid anchors allowing the exposure of proteins at the outer layer of the plasma membrane. In fungi, a number of GPI-anchored proteins (GPI-APs) are involved in the remodeling of the cell wall polymers. GPIs f...

(This article belongs to the Special Issue Fungal Cell Wall)
  • Article
  • Open Access
21 Citations
5,636 Views
14 Pages

30 January 2018

Cell wall biosynthesis and remodeling are essential for fungal growth and development. In the fungal pathogen Aspergillus fumigatus, the β(1,3)glucan is the major cell wall polysaccharide. This polymer is synthesized at the plasma membrane by a trans...

(This article belongs to the Special Issue Fungal Cell Wall)
  • Article
  • Open Access
17 Citations
7,573 Views
21 Pages

Fungi as Endophytes in Artemisia thuscula: Juxtaposed Elements of Diversity and Phylogeny

  • Andreea Cosoveanu,
  • Samuel Rodriguez Sabina and
  • Raimundo Cabrera

27 January 2018

Artemisia is a plant genus highly studied for its medicinal applications. The studies on the associated fungal endophytes are scarce. Ten plants specimens of Artemisia thuscula from Tenerife and La Palma were sampled to isolate the endophytic fungi....

(This article belongs to the Special Issue Fungal Endophytes in Plants)
  • Article
  • Open Access
52 Citations
6,973 Views
12 Pages

Biofilm Formation and Resistance to Fungicides in Clinically Relevant Members of the Fungal Genus Fusarium

  • Hafize Sav,
  • Haleh Rafati,
  • Yasemin Öz,
  • Burcu Dalyan-Cilo and ,
  • Beyza Ener,
  • Faezeh Mohammadi,
  • Macit Ilkit,
  • Anne D. Van Diepeningen and
  • Seyedmojtaba Seyedmousavi
  • + 4 authors+ 0 author

23 January 2018

Clinically relevant members of the fungal genus, Fusarium, exhibit an extraordinary genetic diversity and cause a wide spectrum of infections in both healthy individuals and immunocompromised patients. Generally, Fusarium species are intrinsically re...

  • Article
  • Open Access
20 Citations
6,554 Views
13 Pages

Analysis of Transposable Elements in Coccidioides Species

  • Theo N. Kirkland,
  • Anna Muszewska and
  • Jason E. Stajich

19 January 2018

Coccidioides immitis and C. posadasii are primary pathogenic fungi that cause disease in immunologically-normal animals and people. The organism is found exclusively in arid regions of the Southwestern United States, Mexico, and South America, but no...

(This article belongs to the Special Issue Genomic Data in Pathogenic Fungi)
  • Article
  • Open Access
28 Citations
6,504 Views
12 Pages

Burden of Serious Fungal Infections in Jordan

  • Jamal Wadi and
  • David W. Denning

18 January 2018

Objective: To estimate the burden of fungal infections in Jordan for the first time. Material and Methods: Population data was from UN 2011 statistics and TB cases from WHO in 2012. Fewer than 100 patients with HIV were recorded in Jordan in 2013. Ap...

(This article belongs to the Special Issue Fungal Burden in Different Countries)
  • Article
  • Open Access
18 Citations
6,589 Views
18 Pages

16 January 2018

Fusarium culmorum is one of the species causing Fusarium head blight (FHB) in cereals in Europe. We aimed to investigate the association between the nucleotide diversity of ten F. culmorum candidate genes and field ratings of aggressiveness in winter...

(This article belongs to the Special Issue Genomic Data in Pathogenic Fungi)
  • Review
  • Open Access
49 Citations
11,952 Views
20 Pages

Gaining Insights from Candida Biofilm Heterogeneity: One Size Does Not Fit All

  • Ryan Kean,
  • Christopher Delaney,
  • Ranjith Rajendran,
  • Leighann Sherry and ,
  • Rebecca Metcalfe,
  • Rachael Thomas,
  • William McLean,
  • Craig Williams and
  • Gordon Ramage
  • + 4 authors+ 0 author

15 January 2018

Despite their clinical significance and substantial human health burden, fungal infections remain relatively under-appreciated. The widespread overuse of antibiotics and the increasing requirement for indwelling medical devices provides an opportunis...

(This article belongs to the Special Issue Candida and Candidiasis)
  • Review
  • Open Access
102 Citations
16,136 Views
10 Pages

11 January 2018

Candida albicans is a commensal resident of the human gastrointestinal and genital tracts. Under conditions such as dysbiosis, host immune perturbances, or the presence of catheters/implanted medical devices, the fungus may cause debilitating mucosal...

(This article belongs to the Special Issue Candida and Candidiasis)
  • Review
  • Open Access
34 Citations
8,133 Views
20 Pages

9 January 2018

Candida spp. are colonizing fungi of human skin and mucosae of the gastrointestinal and genitourinary tract, present in 30–50% of healthy individuals in a population at any given moment. The host defense mechanisms prevent this commensal fungus from...

  • Review
  • Open Access
56 Citations
8,971 Views
17 Pages

Anti-Aspergillus Activities of the Respiratory Epithelium in Health and Disease

  • Margherita Bertuzzi,
  • Gemma E. Hayes,
  • Uju J. Icheoku,
  • Norman Van Rhijn and ,
  • David W. Denning,
  • Nir Osherov and
  • Elaine M. Bignell
  • + 2 authors+ 0 author

8 January 2018

Respiratory epithelia fulfil multiple roles beyond that of gaseous exchange, also acting as primary custodians of lung sterility and inflammatory homeostasis. Inhaled fungal spores pose a continual antigenic, and potentially pathogenic, challenge to...

(This article belongs to the Special Issue Mucosal Fungal Infections)
  • Article
  • Open Access
33 Citations
8,375 Views
19 Pages

Diversity of Cell Wall Related Proteins in Human Pathogenic Fungi

  • Anna Muszewska,
  • Sebastian Piłsyk,
  • Urszula Perlińska-Lenart and
  • Joanna S. Kruszewska

29 December 2017

The cell wall is one of the major keys to fungal identity. Fungi use their cell wall to sense the environment, and localize nutrients and competing microorganism. Pathogenic species additionally modify their cell walls to hide from a host’s immune sy...

(This article belongs to the Special Issue Genomic Data in Pathogenic Fungi)
  • Review
  • Open Access
69 Citations
12,059 Views
10 Pages

28 December 2017

Echinocandin antifungals represent one of the most important drug classes for the treatment of invasive fungal infections. The mode of action of the echinocandins relies on inhibition of the β-1,3-glucan synthase, an enzyme essentially required for t...

(This article belongs to the Special Issue Fungal Cell Wall)
  • Review
  • Open Access
13 Citations
6,891 Views
12 Pages

25 December 2017

Cryptococcal meningitis (CM) is a life-threatening fungal disease affecting both immunosuppressed and immunocompetent people. The main causative agent of CM is Cryptococcus neoformans, a basidiomycete fungus prevalent in the environment. Our understa...

(This article belongs to the Special Issue Cryptococcus and Cryptococcosis)
  • Review
  • Open Access
15 Citations
4,834 Views
9 Pages

24 December 2017

Aspergillus fumigatus produce airborne spores (conidia), which are inhaled in abundant quantity. In an immunocompromised population, the host immune system fails to clear the inhaled conidia, which then germinate and invade, leading to pulmonary aspe...

(This article belongs to the Special Issue Fungal Cell Wall)
  • Article
  • Open Access
105 Citations
10,919 Views
19 Pages

Role of Hydrophobins in Aspergillus fumigatus

  • Isabel Valsecchi,
  • Vincent Dupres,
  • Emmanuel Stephen-Victor,
  • J. Iñaki Guijarro and ,
  • John Gibbons,
  • Rémi Beau,
  • Jagadeesh Bayry,
  • Jean-Yves Coppee,
  • Frank Lafont and
  • Anne Beauvais
  • + 6 authors+ 1 author

24 December 2017

Resistance of Aspergillus fumigatus conidia to desiccation and their capacity to reach the alveoli are partly due to the presence of a hydrophobic layer composed of a protein from the hydrophobin family, called RodA, which covers the conidial surface...

(This article belongs to the Special Issue Fungal Cell Wall)
  • Review
  • Open Access
126 Citations
14,806 Views
12 Pages

The CWI Pathway: Regulation of the Transcriptional Adaptive Response to Cell Wall Stress in Yeast

  • Ana Belén Sanz,
  • Raúl García,
  • José M. Rodríguez-Peña and
  • Javier Arroyo

21 December 2017

Fungi are surrounded by an essential structure, the cell wall, which not only confers cell shape but also protects cells from environmental stress. As a consequence, yeast cells growing under cell wall damage conditions elicit rescue mechanisms to pr...

(This article belongs to the Special Issue Fungal Cell Wall)
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J. Fungi - ISSN 2309-608X