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Biology, Volume 3, Issue 2

2014 June - 12 articles

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Articles (12)

  • Article
  • Open Access
16 Citations
9,768 Views
26 Pages

Myogenic Differential Methylation: Diverse Associations with Chromatin Structure

  • Sruti Chandra,
  • Carl Baribault,
  • Michelle Lacey and
  • Melanie Ehrlich

19 June 2014

Employing a new algorithm for identifying differentially methylated regions (DMRs) from reduced representation bisulfite sequencing profiles, we identified 1972 hypermethylated and 3250 hypomethylated myogenic DMRs in a comparison of myoblasts (Mb) a...

  • Review
  • Open Access
55 Citations
9,451 Views
23 Pages

18 June 2014

Recent genome-wide analysis of C-phosphate-G (CpG) sites has shown that the DNA methylome changes with increasing age, giving rise to genome-wide hypomethylation with site‑specific incidences of hypermethylation. This notion has received a lot of att...

  • Article
  • Open Access
4 Citations
9,133 Views
20 Pages

Data Pre-Processing for Label-Free Multiple Reaction Monitoring (MRM) Experiments

  • Lisa M. Chung,
  • Christopher M. Colangelo and
  • Hongyu Zhao

5 June 2014

Multiple Reaction Monitoring (MRM) conducted on a triple quadrupole mass spectrometer allows researchers to quantify the expression levels of a set of target proteins. Each protein is often characterized by several unique peptides that can be detecte...

  • Review
  • Open Access
241 Citations
35,078 Views
23 Pages

Advanced Cell Culture Techniques for Cancer Drug Discovery

  • Carrie J. Lovitt,
  • Todd B. Shelper and
  • Vicky M. Avery

30 May 2014

Human cancer cell lines are an integral part of drug discovery practices. However, modeling the complexity of cancer utilizing these cell lines on standard plastic substrata, does not accurately represent the tumor microenvironment. Research into dev...

  • Article
  • Open Access
6 Citations
8,064 Views
15 Pages

30 May 2014

The muscle wasting and loss of specific force associated with Critical Illness Myopathy (CIM) is, at least in part, due to a preferential loss of the molecular motor protein myosin. This acquired myopathy is common in critically ill immobilized and m...

  • Article
  • Open Access
39 Citations
18,870 Views
12 Pages

High Intensity Training Improves Health and Physical Function in Middle Aged Adults

  • Simon Adamson,
  • Ross Lorimer,
  • James N. Cobley,
  • Ray Lloyd and
  • John Babraj

12 May 2014

High intensity training (HIT) is effective at improving health; however, it is unknown whether HIT also improves physical function. This study aimed to determine whether HIT improves metabolic health and physical function in untrained middle aged ind...

  • Article
  • Open Access
19 Citations
13,898 Views
25 Pages

Sequence-Based Analysis of Structural Organization and Composition of the Cultivated Sunflower (Helianthus annuus L.) Genome

  • Navdeep Gill,
  • Matteo Buti,
  • Nolan Kane,
  • Arnaud Bellec,
  • Nicolas Helmstetter,
  • Hélène Berges and
  • Loren H. Rieseberg

16 April 2014

Sunflower is an important oilseed crop, as well as a model system for evolutionary studies, but its 3.6 gigabase genome has proven difficult to assemble, in part because of the high repeat content of its genome. Here we report on the sequencing, asse...

  • Article
  • Open Access
123 Citations
20,893 Views
13 Pages

On-Beads Digestion in Conjunction with Data-Dependent Mass Spectrometry: A Shortcut to Quantitative and Dynamic Interaction Proteomics

  • Benedetta Turriziani,
  • Amaya Garcia-Munoz,
  • Ruth Pilkington,
  • Cinzia Raso,
  • Walter Kolch and
  • Alexander Von Kriegsheim

16 April 2014

With the advent of the “-omics” era, biological research has shifted from functionally analyzing single proteins to understanding how entire protein networks connect and adapt to environmental cues. Frequently, pathological processes are initiated by...

  • Review
  • Open Access
6 Citations
7,431 Views
14 Pages

10 April 2014

Fibroproliferative diseases are one of the leading causes of death worldwide. They are characterized by reactive fibrosis caused by uncontrolled synthesis of type I collagen. There is no cure for fibrosis and development of therapeutics that can inhi...

  • Article
  • Open Access
6 Citations
8,112 Views
17 Pages

Body Size Shifts in Philippine Reef Fishes: Interfamilial Variation in Responses to Protection

  • Robert Y. Fidler,
  • Aileen Maypa,
  • Dean Apistar,
  • Alan White and
  • Ralph G. Turingan

31 March 2014

As a consequence of intense fishing pressure, fished populations experience reduced population sizes and shifts in body size toward the predominance of smaller and early maturing individuals. Small, early-maturing fish exhibit significantly reduced r...

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Biology - ISSN 2079-7737