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Genes, Volume 16, Issue 8

2025 August - 142 articles

Cover Story: Mesenchymal stem cells (MSCs) are key players in regenerative medicine, largely through paracrine signalling and the release of extracellular vesicles (EVs) carrying bioactive RNAs and proteins. To better understand their therapeutic potential, we compared transcriptomes of equine adipose- and bone marrow-derived MSCs with ovarian fibroblasts as a control, and profiled EV miRNAs by next-generation sequencing. Distinct mRNA and miRNA signatures were observed across cell types and their EVs, reflecting tissue origin. Bone marrow MSCs exhibited a unique regulation of genes associated with development and osteogenesis, whereas EVs carried a diverse array of RNA species, including novel miRNAs. These findings highlight that MSC source shapes both transcriptomic and EV profiles, offering insights for optimising equine MSC-based therapies. View this paper
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Articles (142)

  • Article
  • Open Access
1,795 Views
10 Pages

Transcriptional Regulation of CYP2E1: Promoter Methylation in In Vitro Models and Human Liver Disease Samples

  • Nina Komaniecka,
  • Mateusz Kurzawski,
  • Sylwia Szeląg-Pieniek,
  • Joanna Łapczuk-Romańska and ,
  • Mariola Post,
  • Urszula Adamiak-Giera and
  • Marek Droździk
  • + 2 authors+ 0 author

21 August 2025

Background/Objectives: DNA methylation is a critical epigenetic mechanism involved in gene expression regulation. This study examines promoter methylation of CYP2E1 in healthy liver, intestinal mucosa, as well as pathological liver samples, alongside...

(This article belongs to the Section Epigenomics)
  • Case Report
  • Open Access
2 Citations
2,108 Views
10 Pages

A Novel Pathogenic Variant of the AVPR2 Gene Leading to Arginine Vasopressin Resistance Since the Neonatal Period

  • Agnieszka Szmigielska,
  • Piotr Skrzypczyk,
  • Dorota Czapczak,
  • Marta Dux and ,
  • Adam Lipka,
  • Beata Pyrżak and
  • Anna Małgorzata Kucharska
  • + 2 authors+ 0 author

21 August 2025

Background: Diabetes insipidus (DI) in newborns is an extremely rare condition, with the age of presentation strongly suggesting a genetic background of the disease. The differential diagnosis should include arginine vasopressin deficiency (AVD) and...

(This article belongs to the Special Issue Genetics and Genomics of Endocrine Diseases in Children and Adolescents)
  • Article
  • Open Access
3 Citations
1,642 Views
12 Pages

Abnormal ERV Expression and Its Clinical Relevance in Colon Cancer

  • Aditya Bhagwate,
  • William Taylor,
  • John Kisiel and
  • Zhifu Sun

21 August 2025

Background/Objectives: Human endogenous retroviruses (ERVs) are genomic sequences integrated into the human genome from ancestral exogenous retroviruses and are epigenetically silenced under normal conditions. Growing evidence has shown that they can...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
4 Citations
2,240 Views
14 Pages

Genetic and Clinical Spectrum of Limb–Girdle Muscular Dystrophies in Western Sicily

  • Nicasio Rini,
  • Antonino Lupica,
  • Paolo Alonge,
  • Grazia Crescimanno and ,
  • Antonia Pignolo,
  • Christian Messina,
  • Sandro Santa Paola,
  • Marika Giuliano,
  • Eugenia Borgione and
  • Filippo Brighina
  • + 8 authors+ 3 authors

21 August 2025

Background and Objectives: Limb–girdle muscular dystrophies (LGMDs) are a group of muscular dystrophies characterized by predominantly proximal-muscle weakness, with a highly heterogeneous genetic etiology. Despite recent efforts, the epidemiol...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Review
  • Open Access
18 Citations
7,165 Views
24 Pages

21 August 2025

For 40 years, Intron Retention (IR) was dismissed as splicing noise and is now recognized as a dynamic and evolutionarily conserved mechanism of post-transcriptional gene regulation. Unlike canonical splicing, which excises all introns from pre-mRNAs...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
1,727 Views
14 Pages

Epilepsy Associated Gene, Pcdh7, Is Dispensable for Brain Development in Mice

  • Jennifer Rakotomamonjy,
  • Devin Davies,
  • Xavier Valencia,
  • Olivia Son and ,
  • Ximena Gomez-Maqueo and
  • Alicia Guemez-Gamboa
  • + 1 author+ 0 author

21 August 2025

Background/Objectives: Protocadherin 7 (Pcdh7) belongs to the protocadherin family, the largest subgroup of cell adhesion molecules. Members of this family are highly expressed in the brain, where they serve fundamental roles in many neurodevelopment...

(This article belongs to the Special Issue The Genetic and Epigenetic Basis of Neurodevelopmental Disorders)
  • Article
  • Open Access
5 Citations
2,383 Views
23 Pages

21 August 2025

Background: Intramuscular fat (IMF) enhances marbling, improving meat quality and value. Transcriptome analysis enables the identification of genes and pathways involved in IMF deposition, supporting targeted breeding and nutritional strategies to im...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
3 Citations
1,878 Views
13 Pages

20 August 2025

Background: L-2-hydroxyglutaric aciduria (L2HGA) is a rare autosomal recessive neurometabolic disorder caused by biallelic loss-of-function variants in the L-2-hydroxyglutarate dehydrogenase (L2HGDH) gene, leading to accumulation of L-2-hydroxyglutar...

(This article belongs to the Special Issue Genetics and Treatment in Neurodegenerative Diseases)
  • Article
  • Open Access
2 Citations
2,136 Views
28 Pages

Replication of the GWAS-Identified GALNT13 rs10196189 Polymorphism in Relation to Speed–Power Elite Active Athlete Status and Multidimensional Phenotypic Differences in Chinese Han Males: A Pilot Study

  • Lun Chen,
  • Mingrui Wang,
  • Longtianjiao Liu,
  • Xiaoyu Jiang and ,
  • Zihang Cao,
  • Samuhaer Azhati,
  • Hangyu Chen,
  • Kaixin She,
  • Jinyao Zhu and
  • Lijun Shi
  • + 15 authors+ 10 authors

20 August 2025

Background/Objectives: Previous multi-ethnic genome-wide association studies (GWAS) have identified the GALNT13 rs10196189 polymorphism as a potential genetic marker linked to sprint–power performance. However, its relevance in East Asian popul...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Review
  • Open Access
3 Citations
3,278 Views
9 Pages

Deep Learning Models: Their Relationship with Embryonic Euploidies and Reproductive Outcomes

  • Aikaterini Selntigia,
  • Lucia Maresca,
  • Diletta Montanino Oliva,
  • Camilla Coianiz and
  • Daniela Galliano

20 August 2025

Background: Embryo selection in in vitro fertilization (IVF) aims to prioritize embryos with the highest reproductive potential. While preimplantation genetic testing for aneuploidy (PGT-A) remains the gold standard for identifying euploid embryos, i...

(This article belongs to the Section Bioinformatics)
  • Article
  • Open Access
4 Citations
6,485 Views
13 Pages

Genetic and Sonographic Insights into First-Trimester Fetal Cystic Hygroma: A Retrospective 30-Year Analysis Using 3D/4D Ultrasound and Cytogenetic Evaluation in Croatia (1993–2023)

  • Petra Podobnik,
  • Tomislav Meštrović,
  • Mario Podobnik,
  • Igor Lončar and ,
  • Ivan Bertović-Žunec,
  • Kristian Kurdija,
  • Dženis Jelčić,
  • Zlata Srebreniković and
  • Slava Podobnik-Šarkanji
  • + 4 authors+ 0 author

20 August 2025

Background/Objectives: Cystic hygroma is a congenital lymphatic malformation often identified during early pregnancy and frequently associated with chromosomal abnormalities and adverse outcomes. We aimed to appraise the genetic and clinical characte...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
1 Citations
1,238 Views
13 Pages

20 August 2025

Objectives: Sillago japonica is a commercially important marine fish species in the Northwestern Pacific, and understanding its genetic diversity and population structure is crucial for germplasm resource conservation and elucidating population evolu...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
1 Citations
1,475 Views
11 Pages

20 August 2025

Background: Aspidophorodon Verma, 1967 (Macrosiphini: Aphidinae), is a genus within Aphididae (aphids) with ecological importance and a unique distribution, but there is a lack of mitogenomic data on the evolutionary relationships within this genus,...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
1 Citations
1,540 Views
17 Pages

The Complete Mitochondrial Genome of Liobagrus huaiheensis (Teleostei: Siluriformes: Amblycipitidae): Characterization, Phylogenetic Placement, and Insights into Genetic Diversity

  • Chaoqun Su,
  • Chenxi Tan,
  • Liangjie Zhao,
  • Jiahui Liu and ,
  • Xusheng Guo,
  • Gaoyou Yao,
  • Weizhao Zhang and
  • Tiezhu Yang
  • + 3 authors+ 0 author

19 August 2025

Background/Objectives: Liobagrus huaiheensis, an endemic fish in the Huaihe River basin, is a newly described species with limited molecular genetic research, hindering understanding of its evolutionary status, population structure, and genetic diver...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
1,728 Views
18 Pages

19 August 2025

Background: Frailty is an aging-associated syndrome involving a loss of physiological reserve and function, with decreased ability to recover from physical and psychosocial stress. However, the etiology and pathogenesis of frailty remain largely unkn...

(This article belongs to the Special Issue Genetics and Genomics of Heritable Pediatric Disorders)
  • Article
  • Open Access
1,735 Views
10 Pages

Identification of a Pathogenic Mutation for Glycogen Storage Disease Type II (Pompe Disease) in Japanese Quails (Coturnix japonica)

  • Abdullah Al Faruq,
  • Takane Matsui,
  • Shinichiro Maki,
  • Nanami Arakawa and ,
  • Kenichi Watanabe,
  • Yoshiyasu Kobayashi,
  • Tofazzal Md Rakib,
  • Md Shafiqul Islam,
  • Akira Yabuki and
  • Osamu Yamato
  • + 5 authors+ 0 author

19 August 2025

Background/Objectives: Pompe disease (PD) is a rare autosomal recessive disorder caused by a deficiency of the lysosomal acid α-1,4-glucosidase (GAA) encoded by the GAA gene, leading to muscular dysfunctions due to pathological accumulation of...

(This article belongs to the Special Issue Genetic Breeding of Poultry)
  • Article
  • Open Access
1,771 Views
15 Pages

CaSR Gene Polymorphisms and PHPT Phenotypes: What Else Can We Learn? A Single-Center Experience on a Cohort of Italian Patients

  • Michele Cannito,
  • Giacomo Voltan,
  • Giulia Carraro,
  • Michela Ferrarese and ,
  • Giacomo Contini,
  • Carlo Mogno,
  • Loris Bertazza,
  • Susi Barollo,
  • Francesca Torresan and
  • Valentina Camozzi
  • + 7 authors+ 2 authors

19 August 2025

Purpose: This study investigates the role of CASR gene polymorphisms (A986S, R990G, Q1011E) in PHPT genetic susceptibility and its clinical variability. The aim is to evaluate the prevalence of these polymorphisms in patients with sporadic PHPT and t...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
4 Citations
2,698 Views
19 Pages

Genome-Wide Identification of the Dirigent Gene Family and Expression Pattern Analysis Under Drought and Salt Stresses of Sorghum bicolor (L.)

  • Shipeng Liu,
  • Tingrui Jing,
  • Shuang Liang,
  • Hairuo Wang and ,
  • Xinyi Guo,
  • Quan Ma,
  • Junshen Wang,
  • Kai Wang,
  • Xiaolong He and
  • Xiangqian Zhang
  • + 7 authors+ 2 authors

19 August 2025

Background: The Dirigent (DIR) gene family is pivotal for lignin polymerization and stress adaptation in plants, yet its systematic characterization in Sorghum bicolor (S. bicolor), a critical bioenergy crop, remains underexplored. Methods: Leveragin...

(This article belongs to the Section Plant Genetics and Genomics)
  • Article
  • Open Access
3 Citations
1,996 Views
7 Pages

CRELD1-Associated Neurodevelopmental Disorder: Three New Individuals from Unrelated Families

  • Jessica Archer,
  • Shuxiang Goh,
  • Christina Miteff,
  • Sheridan O’Donnell and ,
  • Kristen Park and
  • Himanshu Goel
  • + 1 author+ 0 author

18 August 2025

Background: CRELD1 encodes a cell adhesion molecule initially implicated in atrioventricular septal defects (AVSDs). More recently, biallelic CRELD1 variants have been associated with syndromic and non-syndromic neurodevelopmental disorders (NDD...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
3 Citations
3,176 Views
12 Pages

18 August 2025

Background: UDP-glucuronosyltransferase 1A1 (UGT1A1) metabolizes endogenous substances and pharmaceuticals. Genetic polymorphisms, particularly TA repeats in the UGT1A1 promoter TATA region (UGT1A1*28/*36/*37) and a nearby single-nucleotide polymorph...

(This article belongs to the Section Pharmacogenetics)
  • Article
  • Open Access
3 Citations
1,979 Views
14 Pages

Interaction Between Vitamin D Metabolism Genetic Variants: Association with Hypovitaminosis D, Rheumatoid Arthritis, and Its Clinical Disease Activity

  • Bertha Campos-López,
  • Melissa Rivera-Escoto,
  • Adolfo I. Ruiz-Ballesteros,
  • Karen Pesqueda-Cendejas and ,
  • Paulina E. Mora-García,
  • Mónica R. Meza-Meza,
  • Isela Parra-Rojas,
  • José M. Moreno-Ortíz,
  • Eneida Turiján-Espinoza and
  • Ulises De la Cruz-Mosso
  • + 7 authors+ 2 authors

18 August 2025

Background: Hypovitaminosis D has been associated with worse rheumatoid arthritis (RA) manifestations. Notably, different genetic studies have reported that approximately 65% of hypovitaminosis D can be partially explained using the presence of singl...

(This article belongs to the Special Issue Genetic and Epigenetic Factors for Autoimmune Diseases)
  • Article
  • Open Access
2 Citations
2,201 Views
11 Pages

Expanding the Phenotypic Spectrum of SPG4: Autism Spectrum Disorder in Early-Onset and Complex SPAST-HSP and Case Study

  • Carlo Alberto Quaranta,
  • Alice Gardani,
  • Giulia Andorno,
  • Anna Pichiecchio and ,
  • Simone Gana,
  • Renato Borgatti and
  • Simona Orcesi
  • + 2 authors+ 0 author

18 August 2025

Background/Objectives: Hereditary spastic paraplegias (HSPs) comprise a heterogenous spectrum of rare neurogenetic disorders predominantly characterized by progressive spasticity and weakness of the lower extremities. Among autosomal-dominant forms o...

(This article belongs to the Section Neurogenomics)
  • Article
  • Open Access
2 Citations
2,089 Views
18 Pages

Expression of miRNA in the Semitendinosus Muscle of Cattle Breeds with Varying Intramuscular Fat Deposition

  • Anna Ciecierska,
  • Abdolvahab Ebrahimpour Gorji,
  • Alicja Majewska and
  • Tomasz Sadkowski

18 August 2025

Background: This study investigates the expression of microRNAs (miRNAs) in the semitendinosus muscle of cattle breeds with varying intramuscular fat (IMF) deposition to identify key miRNA regulators of beef marbling, utilizing Hereford (HER; higher...

(This article belongs to the Section Animal Genetics and Genomics)
  • Feature Paper
  • Review
  • Open Access
1 Citations
2,273 Views
15 Pages

18 August 2025

Mechanotransduction, also referred to as mechano-signal transduction, is a biophysical process wherein cells perceive and respond to mechanical stimuli by converting them into biochemical signals that initiate specific cellular responses. This mechan...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
9 Citations
2,374 Views
13 Pages

Genotype-by-Environment Interaction in Red Tilapia (Oreochromis spp.): Implications for Genetic Parameters and Trait Performance

  • Tran Huu Phuc,
  • Pham Dang Khoa,
  • Nguyen Thi Dang,
  • Tran Thi Mai Huong and ,
  • Huynh Thi Bich Lien,
  • Vo Thi Hong Tham,
  • Nguyen Huynh Duy and
  • Nguyen Hong Nguyen
  • + 3 authors+ 0 author

18 August 2025

The intensive farming of aquaculture species such as red tilapia (Oreochromis spp.) across diverse production systems can lead to changes in genetic parameters and responses of economically important traits in this species. This study represents the...

(This article belongs to the Special Issue Molecular Genetics Applied to Aquaculture: From Breeding Stock Selection to Biotechnological Innovations)
  • Review
  • Open Access
16 Citations
9,700 Views
21 Pages

16 August 2025

Prime editing (PE), a novel “search-and-replace” genome editing technology, demonstrates significant potential for crop genetic improvement due to its precision and versatility. However, since its initial application in plants, PE technol...

(This article belongs to the Section Plant Genetics and Genomics)
  • Review
  • Open Access
9 Citations
6,863 Views
22 Pages

Endogenous Retroviruses in Host-Virus Coevolution: From Genomic Domestication to Functional Innovation

  • Ruqi Jiang,
  • Jingjun Zhou,
  • Yue Liu,
  • Guanjin Zhou and ,
  • Dongdong Fan,
  • Lixin Xiang,
  • Ye Chen and
  • Jianzhong Shao
  • + 3 authors+ 0 author

15 August 2025

Endogenous retroviruses (ERVs) are remnants of retroviral infections that have become stably integrated into host germline genomes. Far beyond passive genomic elements, ERVs actively shape host evolution through complex mechanisms involving genetic i...

(This article belongs to the Section Viral Genomics)
  • Article
  • Open Access
2 Citations
1,885 Views
16 Pages

Can Cis-Regulatory Elements Explain Differences in Petunia Pollination Syndromes?

  • Aléxia G. Pereira,
  • João Pedro C. Filgueiras and
  • Loreta B. Freitas

15 August 2025

Background: Transcription factors have been linked to changes in various physiological processes, such as attractive and rewarding phenotypes during plant–pollinator interactions. In the genus Petunia, most species are pollinated by bees, but h...

(This article belongs to the Section Plant Genetics and Genomics)
  • Review
  • Open Access
3 Citations
3,849 Views
16 Pages

Genomics in Lung Cancer: A Scoping Review of the Role of ctDNA in Non-Advanced Non-Small-Cell Lung Cancer in the Prediction of Prognosis After Multimodality Therapeutic Approaches

  • Carolina Sassorossi,
  • Jessica Evangelista,
  • Alessio Stefani,
  • Marco Chiappetta and ,
  • Antonella Martino,
  • Annalisa Campanella,
  • Elisa De Paolis,
  • Dania Nachira,
  • Marzia Del Re and
  • Filippo Lococo
  • + 11 authors+ 6 authors

15 August 2025

Background: Circulating tumor DNA (ctDNA), shed into bodily fluids by cancer cells through apoptosis, necrosis, or active secretion, is currently used in the field of genomic investigation in clinical settings, primarily for advanced stages of non-sm...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
1 Citations
1,608 Views
19 Pages

Genome-Wide Identification Analysis of the Rab11 Gene Family in Gossypium hirsutum and Its Expression Analysis in Verticillium dahliae

  • Mengyuan Ma,
  • Meng Zhao,
  • Jiaxing Wang,
  • Jianhang Zhang and ,
  • Shuwei Qin,
  • Ji Ke,
  • Lvbing Fan,
  • Wanting Yang,
  • Wenjie Shen and
  • Asigul Ismayil
  • + 9 authors+ 4 authors

14 August 2025

Background/Objectives: RAB11 (RABA) is a type of RAB GTPase. RAB GTPases are key components of membrane trafficking mechanisms, Rab11 is implicated in a variety of biological developmental processes and responses to biotic and abiotic stresses. Never...

(This article belongs to the Special Issue Physiological and Molecular Mechanisms of Plant Stress Response)
  • Article
  • Open Access
2 Citations
2,547 Views
11 Pages

Hereditary Transthyretin Amyloidosis: Genetic Characterization of the TTR P.Val142Ile Variant in a Calabrian Kindred

  • Francesca Dinatolo,
  • Radha Procopio,
  • Valentina Rocca,
  • Elisa Lo Feudo and ,
  • Adele Dattola,
  • Lucia D’Antona,
  • Fernanda Fabiani,
  • Emma Colao,
  • Rosario Amato and
  • Rodolfo Iuliano
  • + 7 authors+ 2 authors

14 August 2025

Background: Hereditary transthyretin amyloidosis (ATTRv) is a systemic disorder caused by homozygosity or compound heterozygosity for pathogenic mutations in the TTR gene, leading to destabilization of the transthyretin tetramer, misfolding of monome...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Systematic Review
  • Open Access
3 Citations
1,784 Views
13 Pages

The Role of lncRNAs in Complicated Pregnancy: A Systematic Review

  • Antonio Cerillo,
  • Rossella Molitierno,
  • Pasquale De Franciscis,
  • Debora Damiana Nunziata and ,
  • Mario Fordellone,
  • Carlo Capristo,
  • Maria Maddalena Marrapodi,
  • Andrea Etrusco,
  • Antonio Simone Laganà and
  • Marco La Verde
  • + 5 authors+ 0 author

14 August 2025

Background/Objectives: Long non-coding RNAs (lncRNAs) play a crucial role in trophoblast invasion, immune tolerance, and placental angiogenesis. To delineate their diagnostic and pathological significance, we critically evaluated the evidence for cor...

(This article belongs to the Section RNA)
  • Article
  • Open Access
1 Citations
2,196 Views
19 Pages

Hybridization Resulted in Shifts from Dioecy to Monoecy in Weeping Willows (Salix L.)

  • Pablo Alarcón-Bolaños,
  • Loïc Pittet,
  • Li He and
  • Elvira Hörandl

13 August 2025

Background/Objectives: In flowering plants, hybridization is an important evolutionary force that might change sex distributions and sex determination systems (SDSs). However, little is known about processes in the first hybrid generations. Here, we...

(This article belongs to the Section Plant Genetics and Genomics)
  • Review
  • Open Access
5 Citations
5,056 Views
17 Pages

13 August 2025

Background: The mitochondrial integrated stress response (ISR) represents a fundamental cellular adaptation mechanism with dual protective and pathological roles. We critically analyzed current literature on ISR mechanisms, focusing on recent paradig...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
2 Citations
3,730 Views
36 Pages

Long-Term Noninvasive Genetic Monitoring Guides Recovery of the Endangered Columbia Basin Pygmy Rabbits (Brachylagus idahoensis)

  • Stacey A. Nerkowski,
  • Paul A. Hohenlohe,
  • Janet L. Rachlow,
  • Kenneth I. Warheit and ,
  • Jonathan A. Gallie and
  • Lisette P. Waits
  • + 1 author+ 0 author

13 August 2025

Background/Objectives: Loss and fragmentation of habitat from agricultural conversion led to the near extirpation of the pygmy rabbit (Brachylagus idahoensis Merriam, 1891) population in the Columbia Basin (CB) of Washington, USA. Recovery efforts be...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
2 Citations
1,664 Views
15 Pages

13 August 2025

Background: Vitis vinifera L. exhibits diverse varietal traits influencing fruit quality and stress tolerance. The summer black grape (Xiahei), known for its superior tolerance to abiotic stress and intense pigmentation, was hypothesized to possess d...

(This article belongs to the Section Genes & Environments)
  • Review
  • Open Access
8 Citations
2,926 Views
16 Pages

Beyond the Tissue: Unlocking NSCLC Treatment Potential Through Liquid Biopsy

  • Milica Kontic,
  • Mihailo Stjepanovic and
  • Filip Markovic

13 August 2025

Lung cancer (LC), with non-small-cell lung cancer (NSCLC) as its predominant subtype, remains the leading cause of cancer-related mortality worldwide. While immune checkpoint inhibitors (ICIs) have redefined the therapeutic paradigm in advanced NSCLC...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
1 Citations
1,853 Views
16 Pages

Mitochondrial Genome and RNA Editing Tissue Specificity of Centella asiatica

  • Cuihong Yang,
  • Wenjing Liang,
  • Ya Qin,
  • Yuqiong Li and ,
  • Shugen Wei,
  • Qiulan Huang,
  • Ahmed H. El-Sappah,
  • Guiyu Tan,
  • Ying Wei and
  • Lingyun Wan
  • + 6 authors+ 1 author

12 August 2025

Background: Centella asiatica, a medicinally important species that is rich in bioactive compounds, lacks a characterized mitochondrial genome, despite nuclear and chloroplast assemblies. We sequenced and annotated its mitochondrial genome to elucida...

(This article belongs to the Section Plant Genetics and Genomics)
  • Review
  • Open Access
10 Citations
6,098 Views
24 Pages

12 August 2025

Background/Objectives: Messenger RNA (mRNA) modifications regulate key steps in gene expression, including splicing, translation, and stability. Despite over 300 known RNA modifications, the relatively small subset occurring in mRNA remains understud...

(This article belongs to the Section RNA)
  • Review
  • Open Access
6 Citations
5,955 Views
20 Pages

Tooth Decay: Genetic and Epigenetic Insights Driving the Development of Anti-Caries Vaccines

  • Inès Bouaita,
  • André Peixoto,
  • Paulo Mascarenhas and
  • Cristina Manso

12 August 2025

Dental caries is now recognised as a multifactorial disease shaped by complex interactions among genetic, epigenetic, microbiological, environmental, and social factors. This narrative review synthesises recent findings on the influence of genetic an...

(This article belongs to the Special Issue Genetic, Epigenetic and Environmental Factors in Dental Development and Pathologies: Genes, Interactions and Dental Development)
  • Article
  • Open Access
5 Citations
1,925 Views
19 Pages

Transcriptomic Dynamics of Rice Varieties with Differential Cold Tolerance Under Low-Temperature Stress During Grain-Filling Stage

  • Liangzi Cao,
  • Xueyang Wang,
  • Yingying Liu,
  • Guohua Ding and ,
  • Jinsong Zhou,
  • Lei Lei,
  • Liangming Bai,
  • Yu Luo and
  • Shichen Sun
  • + 4 authors+ 0 author

11 August 2025

Background/Objectives: Low-temperature stress during the grain-filling stage negatively affects rice grain quality and yield. Understanding the physiological and molecular mechanisms underlying cold tolerance is critical for breeding rice varieties w...

(This article belongs to the Section Genes & Environments)
  • Article
  • Open Access
2 Citations
1,970 Views
18 Pages

Oxidative Stress and Intestinal Transcriptome Changes in Clostridium perfringens Type A-Caused Enteritis in Deer

  • Meihui Wang,
  • Qingyun Guo,
  • Zhenyu Zhong,
  • Qingxun Zhang and ,
  • Yunfang Shan,
  • Zhibin Cheng,
  • Xiao Wang,
  • Yuping Meng,
  • Yulan Dong and
  • Jiade Bai
  • + 5 authors+ 0 author

11 August 2025

Background: Clostridium perfringens (C. perfringens) type A is a major cause of enteritis in farmed and wild deer populations, leading to significant economic losses in the deer industry. This bacterium produces toxins that damage the intestine. Meth...

(This article belongs to the Section Animal Genetics and Genomics)
  • Review
  • Open Access
15 Citations
6,790 Views
22 Pages

Muscle Aging Heterogeneity: Genetic and Structural Basis of Sarcopenia Resistance

  • Angelina Titova,
  • Airat Bilyalov,
  • Nikita Filatov,
  • Stepan Perepechenov and ,
  • Darya Kupriyanova,
  • Sergei Brovkin,
  • Dmitrii Shestakov,
  • Natalia Bodunova and
  • Oleg Gusev
  • + 4 authors+ 0 author

11 August 2025

Sarcopenia, the progressive loss of skeletal muscle mass and function with age, significantly contributes to frailty and mortality in older adults. Notably, muscles do not age uniformly—some retain structure and strength well into old age. This...

(This article belongs to the Section Human Genomics and Genetic Diseases)
  • Article
  • Open Access
4 Citations
2,634 Views
18 Pages

Alternative Splicing of Serum Response Factor Reveals Isoform-Specific Remodeling in Cardiac Diseases

  • Sayed Aliul Hasan Abdi,
  • Gohar Azhar,
  • Xiaomin Zhang,
  • Shakshi Sharma and ,
  • Mohib Hafeez and
  • Jeanne Y. Wei
  • + 1 author+ 0 author

11 August 2025

Background: Alternative splicing is an important mechanism of transcriptomic and proteomic diversity and is progressively involved in cardiovascular disease (CVD) pathogenesis. Serum response factor (SRF), a critical transcription factor in cardiac d...

(This article belongs to the Special Issue Advances in Bioinformatics of Human Diseases)
  • Article
  • Open Access
8 Citations
2,910 Views
18 Pages

Exploring the Functional Potential of the Broiler Gut Microbiome Using Shotgun Metagenomics

  • Nuria Peña,
  • Irene Lafuente,
  • Ester Sevillano,
  • Javier Feito and ,
  • Gastón Allendez,
  • Estefanía Muñoz-Atienza,
  • Fiona Crispie,
  • Luis M. Cintas,
  • Paul D. Cotter and
  • Juan Borrero
  • + 6 authors+ 1 author

11 August 2025

Background/Objectives: Antimicrobial peptides (AMPs) have emerged as promising alternatives to conventional antibiotics in livestock, offering a sustainable strategy for controlling bacterial pathogens in food production systems. In addition to their...

(This article belongs to the Section Microbial Genetics and Genomics)
  • Article
  • Open Access
5 Citations
2,940 Views
19 Pages

11 August 2025

Background: Genome-wide association studies (GWAS) have been extensively employed to elucidate the genetic architecture of body weight (BW) traits in chickens, which represent key economic indicators in broiler production. With the growing availabili...

(This article belongs to the Section Animal Genetics and Genomics)
  • Article
  • Open Access
7 Citations
2,370 Views
13 Pages

Genetic Panel Testing for Malignant Hyperthermia in Japan: Discovery of Novel Variants and Clinical Implications

  • Hirotsugu Miyoshi,
  • Keiko Mukaida,
  • Sachiko Otsuki,
  • Kenshiro Kido and ,
  • Ayako Sumii,
  • Tsuyoshi Ikeda,
  • Guoqiang Xia,
  • Yuko Noda,
  • Tomomi Ishii and
  • Yasuo M. Tsutsumi
  • + 8 authors+ 3 authors

11 August 2025

Background: Malignant hyperthermia (MH) is a pharmacogenetic disorder of skeletal muscle triggered by certain anesthetic agents. While Ryanodine Receptor 1 (RYR1) and Calcium Voltage-Gated Channel Subunit Alpha1 S (CACNA1S) are well-established susce...

(This article belongs to the Section Genetic Diagnosis)
  • Review
  • Open Access
2 Citations
2,100 Views
15 Pages

MicroRNAs as Potential Biomarkers for Alzheimer’s Disease in Women

  • Shiwei Huang,
  • Lily Zhong,
  • Lilly Zheng and
  • Jian Shi

11 August 2025

Alzheimer’s disease (AD) affects approximately 50 million people worldwide, with women comprising two-thirds of those affected. Despite this disproportionate impact, the sex-specific pathological mechanisms underlying AD in women remain poorly...

(This article belongs to the Section RNA)
  • Brief Report
  • Open Access
5 Citations
1,765 Views
12 Pages

Effects of Aging on Z-DNA-Induced Genetic Instability In Vivo

  • Tonia T. Li,
  • Alexandra D’Amico,
  • Laura Christensen and
  • Karen M. Vasquez

11 August 2025

Repetitive DNA sequences are abundant in genomes and can adopt alternative DNA structures (i.e., non-B DNA). One such structure, Z-DNA, has been shown to stimulate genetic instability in a variety of organisms, including human cells and mice. Z-DNA-f...

(This article belongs to the Section Molecular Genetics and Genomics)
  • Article
  • Open Access
4 Citations
1,620 Views
19 Pages

Analysis of the Genetic Mechanism of Yield-Related Traits of Maize in Cold Regions

  • Chao Gao,
  • Zimeng Li,
  • Guogang Zheng,
  • Hong Di and ,
  • Lin Zhang,
  • Zhenhua Wang and
  • Ling Dong
  • + 2 authors+ 0 author

8 August 2025

Background: Maize is an important food crop in cold regions, especially in Northeast China. However, its short growth period and low-temperature stress pose challenges to the breeding of high-yield hybrids. With climate warming, the maize planting ar...

(This article belongs to the Section Plant Genetics and Genomics)

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Genes - ISSN 2073-4425