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Genes, Volume 12, Issue 2

February 2021 - 196 articles

Cover Story: The efficiency of DNA extraction is crucial for genotyping success. This is particularly true for biological specimens that contain minute amounts of DNA, such as bones, which are relevant in archaeogenetic and forensic genetic research. We compare the performance of two DNA extraction protocols that are commonly used in those two disciplines and demonstrate the pros and cons of each method. We also test sampling modifications, such as parallel pooling strategies, to increase DNA yield despite minimizing sample consumption. Our results aid the choice of the preferred DNA extraction method based on marker requirements and bone specimens at hand. View this paper
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Articles (196)

  • Case Report
  • Open Access
5 Citations
3,754 Views
8 Pages

A Novel ATM Pathogenic Variant in an Italian Woman with Gallbladder Cancer

  • Elisa De Paolis,
  • Andrea Urbani,
  • Lisa Salvatore,
  • Laura Foca,
  • Giampaolo Tortora,
  • Angelo Minucci and
  • Paola Concolino

22 February 2021

Gallbladder carcinoma (GBC) is one of the most aggressive malignancies with poor prognosis and a high fatality rate. The disease presents in advanced stages where the treatment is ineffective. Regarding GBC pathogenesis, as with other neoplasia, this...

  • Article
  • Open Access
9 Citations
3,911 Views
16 Pages

Quantitative Approach to Fish Cytogenetics in the Context of Vertebrate Genome Evolution

  • Veronika Borůvková,
  • W. Mike Howell,
  • Dominik Matoulek and
  • Radka Symonová

22 February 2021

Our novel Python-based tool EVANGELIST allows the visualization of GC and repeats percentages along chromosomes in sequenced genomes and has enabled us to perform quantitative large-scale analyses on the chromosome level in fish and other vertebrates...

  • Article
  • Open Access
8 Citations
3,228 Views
9 Pages

Expression Pattern of Nitric Oxide Synthase during Development of the Marine Gastropod Mollusc, Crepidula fornicata

  • Marta Truchado-Garcia,
  • Filomena Caccavale,
  • Cristina Grande and
  • Salvatore D’Aniello

22 February 2021

Nitric Oxide (NO) plays a key role in the induction of larval metamorphosis in several invertebrate phyla. The inhibition of the NO synthase in Crepidula fornicata, a molluscan model for evolutionary, developmental, and ecological research, has been...

  • Review
  • Open Access
20 Citations
4,876 Views
28 Pages

22 February 2021

Since its initial cloning in 2002, a plethora of studies in a vast number of cancer indications, has strongly established AEG-1 as a bona fide oncogene. In all types of cancer cells, overexpression and knockdown studies have demonstrated that AEG-1 p...

  • Article
  • Open Access
14 Citations
5,849 Views
18 Pages

Waves Out of the Korean Peninsula and Inter- and Intra-Species Replacements in Freshwater Fishes in Japan

  • Shoji Taniguchi,
  • Johanna Bertl,
  • Andreas Futschik,
  • Hirohisa Kishino and
  • Toshio Okazaki

21 February 2021

The Japanese archipelago is located at the periphery of the continent of Asia. Rivers in the Japanese archipelago, separated from the continent of Asia by about 17 Ma, have experienced an intermittent exchange of freshwater fish taxa through a narrow...

  • Article
  • Open Access
4 Citations
3,195 Views
14 Pages

A Deadly Cargo: Gene Repertoire of Cytotoxic Effector Proteins in the Camelidae

  • Ján Futas,
  • Jan Oppelt,
  • Pamela Anna Burger and
  • Petr Horin

21 February 2021

Cytotoxic T cells and natural killer cells can kill target cells based on their expression and release of perforin, granulysin, and granzymes. Genes encoding these molecules have been only poorly annotated in camelids. Based on bioinformatic analyses...

  • Review
  • Open Access
48 Citations
7,951 Views
16 Pages

Sex Determination and Differentiation in Decapod and Cladoceran Crustaceans: An Overview of Endocrine Regulation

  • Kenji Toyota,
  • Hitoshi Miyakawa,
  • Chizue Hiruta,
  • Tomomi Sato,
  • Hidekazu Katayama,
  • Tsuyoshi Ohira and
  • Taisen Iguchi

21 February 2021

Mechanisms underlying sex determination and differentiation in animals are known to encompass a diverse array of molecular clues. Recent innovations in high-throughput sequencing and mass spectrometry technologies have been widely applied in non-mode...

  • Article
  • Open Access
16 Citations
4,034 Views
11 Pages

21 February 2021

Background: Cyclin D1 regulates cyclin-dependent protein kinase activity of the cell cycle, and cyclin D1 alternative splicing generates a cyclin D1b isoform, acting as a mediator of aberrant cellular proliferation. As alternative splicing processes...

  • Article
  • Open Access
11 Citations
3,842 Views
16 Pages

Epigenetic Regulation of Processes Related to High Level of Fibroblast Growth Factor 21 in Obese Subjects

  • Teresa Płatek,
  • Anna Polus,
  • Joanna Góralska,
  • Urszula Raźny,
  • Agnieszka Dziewońska,
  • Agnieszka Micek,
  • Aldona Dembińska-Kieć,
  • Bogdan Solnica and
  • Małgorzata Malczewska-Malec

21 February 2021

We hypothesised that epigenetics may play an important role in mediating fibroblast growth factor 21 (FGF21) resistance in obesity. We aimed to evaluate DNA methylation changes and miRNA pattern in obese subjects associated with high serum FGF21 leve...

  • Article
  • Open Access
4 Citations
4,696 Views
15 Pages

G2PMineR: A Genome to Phenome Literature Review Approach

  • John M. A. Wojahn,
  • Stephanie J. Galla,
  • Anthony E. Melton and
  • Sven Buerki

20 February 2021

There is a gap in the conceptual framework linking genes to phenotypes (G2P) for non-model organisms, as most non-model organisms do not yet have genomic resources readily available. To address this, researchers often perform literature reviews to un...

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Genes - ISSN 2073-4425