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International Journal of Molecular Sciences, Volume 17, Issue 1

2016 January - 134 articles

Cover Story: The Helix pomatia Cd-metallothionein (HpCdMT) is a paradigmatic Cd-specific MT. This work studies how the amino acid sequence of the linker connecting the two nine-Cys HpCdMT moieties influences its ability for metal coordination. Hence, we characterized the metal complexes yielded by two HpCdMT constructs containing longer linkers than the -KT- dipeptide of the wild type form. One mutant reproduced the linker sequence of another gastropod MT, the limpet M. crenulata, with a clear polar character; and the other derived from a plant MT (wheat Ec-1), had a clear apolar composition. Image provided by Òscar Palacios.View this article.
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Articles (134)

  • Review
  • Open Access
55 Citations
9,107 Views
25 Pages

Structure Prediction: New Insights into Decrypting Long Noncoding RNAs

  • Kun Yan,
  • Yasir Arfat,
  • Dijie Li,
  • Fan Zhao,
  • Zhihao Chen,
  • Chong Yin,
  • Yulong Sun,
  • Lifang Hu,
  • Tuanmin Yang and
  • Airong Qian

Long noncoding RNAs (lncRNAs), which form a diverse class of RNAs, remain the least understood type of noncoding RNAs in terms of their nature and identification. Emerging evidence has revealed that a small number of newly discovered lncRNAs perform...

  • Article
  • Open Access
33 Citations
7,432 Views
17 Pages

Unraveling Molecular Differences of Gastric Cancer by Label-Free Quantitative Proteomics Analysis

  • Peng Dai,
  • Qin Wang,
  • Weihua Wang,
  • Ruirui Jing,
  • Wei Wang,
  • Fengqin Wang,
  • Kazem M. Azadzoi,
  • Jing-Hua Yang and
  • Zhen Yan

Gastric cancer (GC) has significant morbidity and mortality worldwide and especially in China. Its molecular pathogenesis has not been thoroughly elaborated. The acknowledged biomarkers for diagnosis, prognosis, recurrence monitoring and treatment ar...

  • Review
  • Open Access
25 Citations
9,222 Views
7 Pages

The Clinical Significance of Phosphorylated Heat Shock Protein 27 (HSPB1) in Pancreatic Cancer

  • Mitsuru Okuno,
  • Seiji Adachi,
  • Osamu Kozawa,
  • Masahito Shimizu and
  • Ichiro Yasuda

Pancreatic cancer is one of most aggressive forms of cancer. After clinical detection it exhibits fast metastatic growth. Heat shock protein 27 (HSP27; HSPB1) has been characterized as a molecular chaperone which modifies the structures and functions...

  • Review
  • Open Access
10 Citations
7,603 Views
14 Pages

Photodynamic Therapy in Non-Gastrointestinal Thoracic Malignancies

  • Biniam Kidane,
  • Dhruvin Hirpara and
  • Kazuhiro Yasufuku

Photodynamic therapy has a role in the management of early and late thoracic malignancies. It can be used to facilitate minimally-invasive treatment of early endobronchial tumours and also to palliate obstructive and bleeding effects of advanced endo...

  • Article
  • Open Access
2 Citations
5,095 Views
12 Pages

This article focuses on correlating the column classification obtained from the method created at the Katholieke Universiteit Leuven (KUL), with the chromatographic resolution attained in biomedical separation. In the KUL system, each column is descr...

  • Review
  • Open Access
167 Citations
19,589 Views
15 Pages

The TEAD Family and Its Oncogenic Role in Promoting Tumorigenesis

  • Yuhang Zhou,
  • Tingting Huang,
  • Alfred S. L. Cheng,
  • Jun Yu,
  • Wei Kang and
  • Ka Fai To

The TEAD family of transcription factors is necessary for developmental processes. The family members contain a TEA domain for the binding with DNA elements and a transactivation domain for the interaction with transcription coactivators. TEAD protei...

  • Article
  • Open Access
17 Citations
10,574 Views
15 Pages

Animals and plants are increasingly threatened by emerging fungal and oomycete diseases. Amongst oomycetes, Saprolegnia species cause population declines in aquatic animals, especially fish and amphibians, resulting in significant perturbation in bio...

  • Review
  • Open Access
37 Citations
14,299 Views
20 Pages

An Overview of Direct Somatic Reprogramming: The Ins and Outs of iPSCs

  • Siddharth Menon,
  • Siny Shailendra,
  • Andrea Renda,
  • Michael Longaker and
  • Natalina Quarto

Stem cells are classified into embryonic stem cells and adult stem cells. An evolving alternative to conventional stem cell therapies is induced pluripotent stem cells (iPSCs), which have a multi-lineage potential comparable to conventionally acquire...

  • Review
  • Open Access
91 Citations
9,839 Views
22 Pages

Cadmium Protection Strategies—A Hidden Trade-Off?

  • Adolf Michael Sandbichler and
  • Martina Höckner

Cadmium (Cd) is a non-essential transition metal which is introduced into the biosphere by various anthropogenic activities. Environmental pollution with Cd poses a major health risk and Cd toxicity has been extensively researched over the past decad...

  • Review
  • Open Access
296 Citations
24,677 Views
14 Pages

Iron Homeostasis in Health and Disease

  • Raffaella Gozzelino and
  • Paolo Arosio

Iron is required for the survival of most organisms, including bacteria, plants, and humans. Its homeostasis in mammals must be fine-tuned to avoid iron deficiency with a reduced oxygen transport and diminished activity of Fe-dependent enzymes, and a...

  • Article
  • Open Access
17 Citations
7,291 Views
14 Pages

VLDL from Metabolic Syndrome Individuals Enhanced Lipid Accumulation in Atria with Association of Susceptibility to Atrial Fibrillation

  • Hsiang-Chun Lee,
  • Hsin-Ting Lin,
  • Liang-Yin Ke,
  • Chi Wei,
  • Yi-Lin Hsiao,
  • Chih-Sheng Chu,
  • Wen-Ter Lai,
  • Shyi-Jang Shin,
  • Chu-Huang Chen and
  • Bin-Nan Wu
  • + 1 author

Metabolic syndrome (MetS) represents a cluster of metabolic derangements. Dyslipidemia is an important factor in MetS and is related to atrial fibrillation (AF). We hypothesized that very low density lipoproteins (VLDL) in MetS (MetS-VLDL) may induce...

  • Article
  • Open Access
26 Citations
6,698 Views
14 Pages

As the causal agent of pine wilt disease (PWD), the pine wood nematode (PWN), Bursaphelenchus xylophilus, causes huge economic losses by devastating pine forests worldwide. The pectate lyase gene is essential for successful invasion of their host pla...

  • Article
  • Open Access
6 Citations
8,107 Views
12 Pages

Statin Therapy and the Development of Cerebral Amyloid Angiopathy—A Rodent in Vivo Approach

  • Björn Reuter,
  • Alexander Venus,
  • Saskia Grudzenski,
  • Patrick Heiler,
  • Lothar Schad,
  • Matthias Staufenbiel,
  • Michael G. Hennerici and
  • Marc Fatar

Background: Cerebral amyloid angiopathy (CAA) is characterized by vascular deposition of amyloid β (Aβ) with a higher incidence of cerebral microbleeds (cMBs) and spontaneous hemorrhage. Since statins are known for their benefit in vascular disease w...

  • Article
  • Open Access
8 Citations
6,112 Views
16 Pages

Genipin Derivatives Protect RGC-5 from Sodium Nitroprusside-Induced Nitrosative Stress

  • Rikang Wang,
  • Jiaqiang Zhao,
  • Lei Zhang,
  • Lizhi Peng,
  • Xinyi Zhang,
  • Wenhua Zheng and
  • Heru Chen

CHR20 and CHR21 are a pair of stable diastereoisomers derived from genipin. These stereoisomers are activators of neuronal nitric oxide synthase (nNOS) and endothelial nitric oxide synthase (eNOS). In the rat retinal ganglion (RGC-5) cell model these...

  • Review
  • Open Access
622 Citations
25,393 Views
24 Pages

Adipogenesis is the process by which precursor stem cells differentiate into lipid laden adipocytes. Adipogenesis is regulated by a complex and highly orchestrated gene expression program. In mammalian cells, the peroxisome proliferator-activated rec...

  • Review
  • Open Access
83 Citations
10,917 Views
14 Pages

The Complex Relationship between Metals and Carbonic Anhydrase: New Insights and Perspectives

  • Maria Giulia Lionetto,
  • Roberto Caricato,
  • Maria Elena Giordano and
  • Trifone Schettino

Carbonic anhydrase is a ubiquitous metalloenzyme, which catalyzes the reversible hydration of CO2 to HCO3 and H+. Metals play a key role in the bioactivity of this metalloenzyme, although their relationships with CA have not been completely clarifie...

  • Review
  • Open Access
61 Citations
21,309 Views
27 Pages

Lung Regeneration: Endogenous and Exogenous Stem Cell Mediated Therapeutic Approaches

  • Khondoker M. Akram,
  • Neil Patel,
  • Monica A. Spiteri and
  • Nicholas R. Forsyth

The tissue turnover of unperturbed adult lung is remarkably slow. However, after injury or insult, a specialised group of facultative lung progenitors become activated to replenish damaged tissue through a reparative process called regeneration. Disr...

  • Article
  • Open Access
18 Citations
10,605 Views
19 Pages

Computational Analysis of Structure-Based Interactions for Novel H1-Antihistamines

  • Yinfeng Yang,
  • Yan Li,
  • Yanqiu Pan,
  • Jinghui Wang,
  • Feng Lin,
  • Chao Wang,
  • Shuwei Zhang and
  • Ling Yang

As a chronic disorder, insomnia affects approximately 10% of the population at some time during their lives, and its treatment is often challenging. Since the antagonists of the H1 receptor, a protein prevalent in human central nervous system, have b...

  • Article
  • Open Access
29 Citations
6,667 Views
12 Pages

Technological Implications of Modifying the Extent of Cell Wall-Proanthocyanidin Interactions Using Enzymes

  • Ana Belén Bautista-Ortín,
  • Rim Ben Abdallah,
  • Liliana Del Rocío Castro-López,
  • María Dolores Jiménez-Martínez and
  • Encarna Gómez-Plaza

The transference and reactivity of proanthocyanidins is an important issue that affects the technological processing of some fruits, such as grapes and apples. These processes are affected by proanthocyanidins bound to cell wall polysaccharides, whic...

  • Article
  • Open Access
7 Citations
7,421 Views
8 Pages

Direct analysis in real time (DART) is a recently developed ambient ionization technique for mass spectrometry to enable rapid and sensitive analyses with little or no sample preparation. After swab-based field sampling, the organothiophosphate malat...

  • Article
  • Open Access
13 Citations
7,300 Views
18 Pages

Ultra-Fast Glyco-Coating of Non-Biological Surfaces

  • Eleanor Williams,
  • Katie Barr,
  • Elena Korchagina,
  • Alexander Tuzikov,
  • Stephen Henry and
  • Nicolai Bovin

The ability to glycosylate surfaces has medical and diagnostic applications, but there is no technology currently recognized as being able to coat any surface without the need for prior chemical modification of the surface. Recently, a family of cons...

  • Article
  • Open Access
11 Citations
6,894 Views
12 Pages

Cloning and Transcriptional Activity of the Mouse Omi/HtrA2 Gene Promoter

  • Dan Liu,
  • Xin Liu,
  • Ye Wu,
  • Wen Wang,
  • Xinliang Ma and
  • Huirong Liu

HtrA serine peptidase 2 (HtrA2), also named Omi, is a pro-apoptotic protein that exhibits dramatic changes in expression levels in a variety of disorders, including ischemia/reperfusion injury, cancer, and neurodegeneration. In our study, Omi/HtrA2 p...

  • Article
  • Open Access
38 Citations
8,182 Views
20 Pages

Platelet-Rich Plasma Increases the Levels of Catabolic Molecules and Cellular Dedifferentiation in the Meniscus of a Rabbit Model

  • Hye-Rim Lee,
  • Oog-Jin Shon,
  • Se-Il Park,
  • Han-Jun Kim,
  • Sukyoung Kim,
  • Myun-Whan Ahn and
  • Sun Hee Do

Despite the susceptibility to frequent intrinsic and extrinsic injuries, especially in the inner zone, the meniscus does not heal spontaneously owing to its poor vascularity. In this study, the effect of platelet-rich plasma (PRP), containing various...

  • Article
  • Open Access
84 Citations
11,799 Views
14 Pages

Metformin Restores Parkin-Mediated Mitophagy, Suppressed by Cytosolic p53

  • Young Mi Song,
  • Woo Kyung Lee,
  • Yong-ho Lee,
  • Eun Seok Kang,
  • Bong-Soo Cha and
  • Byung-Wan Lee

Metformin is known to alleviate hepatosteatosis by inducing 5’ adenosine monophosphate (AMP)-kinase-independent, sirtuin 1 (SIRT1)-mediated autophagy. Dysfunctional mitophagy in response to glucolipotoxicities might play an important role in hepatost...

  • Article
  • Open Access
17 Citations
7,169 Views
15 Pages

Alternative Splicing in Adhesion- and Motility-Related Genes in Breast Cancer

  • Rosanna Aversa,
  • Anna Sorrentino,
  • Roberta Esposito,
  • Maria Rosaria Ambrosio,
  • Angela Amato,
  • Alberto Zambelli,
  • Alfredo Ciccodicola,
  • Luciana D’Apice and
  • Valerio Costa

Breast cancer is the most common tumor and the second leading cause of cancer death among woman, mainly caused by the metastatic spread. Tumor invasiveness is due to an altered expression of adhesion molecules. Among them, semaphorins are of peculiar...

  • Article
  • Open Access
30 Citations
8,165 Views
17 Pages

In Vitro and in Vivo Neuroprotective Effects of Walnut (Juglandis Semen) in Models of Parkinson’s Disease

  • Jin Gyu Choi,
  • Gunhyuk Park,
  • Hyo Geun Kim,
  • Dal-Seok Oh,
  • Hocheol Kim and
  • Myung Sook Oh

Monoamine oxidase (MAO) catalyzes the oxidative deamination of monoamines including dopamine (DA). MAO expression is elevated in Parkinson’s disease (PD). An increase in MAO activity is closely related to age, and this may induce neuronal degeneratio...

  • Review
  • Open Access
53 Citations
9,231 Views
16 Pages

Retinal Cell Degeneration in Animal Models

  • Masayuki Niwa,
  • Hitomi Aoki,
  • Akihiro Hirata,
  • Hiroyuki Tomita,
  • Paul G. Green and
  • Akira Hara

The aim of this review is to provide an overview of various retinal cell degeneration models in animal induced by chemicals (N-methyl-d-aspartate- and CoCl2-induced), autoimmune (experimental autoimmune encephalomyelitis), mechanical stress (optic ne...

  • Review
  • Open Access
37 Citations
7,359 Views
7 Pages

Morphological and Cellular Features of Innate Immune Reaction in Helicobacter pylori Gastritis: A Brief Review

  • Antonio Ieni,
  • Valeria Barresi,
  • Luciana Rigoli,
  • Francesco Fedele,
  • Giovanni Tuccari and
  • Rosario Alberto Caruso

Innate and adaptive immunity are both involved in acute and chronic inflammatory processes. The main cellular players in the innate immune system are macrophages, mast cells, dendritic cells, neutrophils, eosinophils, and natural killer (NK), which o...

  • Article
  • Open Access
13 Citations
6,897 Views
11 Pages

Transcription Factor Sp1 Promotes the Expression of Porcine ROCK1 Gene

  • Ruirui Zhang,
  • Xiaoting Feng,
  • Mengsi Zhan,
  • Cong Huang,
  • Kun Chen,
  • Xiaoyin Tang,
  • Tingting Kang,
  • Yuanzhu Xiong and
  • Minggang Lei

Rho-associated, coiled-coil containing protein kinase 1 (ROCK1) gene plays a crucial role in maintaining genomic stability, tumorigenesis and myogenesis. However, little is known about the regulatory elements governing the transcription of porcine RO...

  • Article
  • Open Access
14 Citations
7,577 Views
12 Pages

Cerebellar Expression of the Neurotrophin Receptor p75 in Naked-Ataxia Mutant Mouse

  • Maryam Rahimi Balaei,
  • Xiaodan Jiao,
  • Niloufar Ashtari,
  • Pegah Afsharinezhad,
  • Saeid Ghavami and
  • Hassan Marzban

Spontaneous mutation in the lysosomal acid phosphatase 2 (Acp2) mouse (nax—naked-ataxia mutant mouse) correlates with severe cerebellar defects including ataxia, reduced size and abnormal lobulation as well as Purkinje cell (Pc) degeneration. Loss of...

  • Article
  • Open Access
33 Citations
13,820 Views
11 Pages

Herb-Induced Liver Injury in the Berlin Case-Control Surveillance Study

  • Antonios Douros,
  • Elisabeth Bronder,
  • Frank Andersohn,
  • Andreas Klimpel,
  • Reinhold Kreutz,
  • Edeltraut Garbe and
  • Juliane Bolbrinker

Herb-induced liver injury (HILI) has recently attracted attention due to increasing reports of hepatotoxicity associated with use of phytotherapeutics. Here, we present data on HILI from the Berlin Case-Control Surveillance Study. The study was initi...

  • Article
  • Open Access
14 Citations
7,154 Views
11 Pages

In Silico Insight into Potential Anti-Alzheimer’s Disease Mechanisms of Icariin

  • Zhijie Cui,
  • Zhen Sheng,
  • Xinmiao Yan,
  • Zhiwei Cao and
  • Kailin Tang

Herbal compounds that have notable therapeutic effect upon Alzheimer's disease (AD) have frequently been found, despite the recent failure of late-stage clinical drugs. Icariin, which is isolated from Epimedium brevicornum, is widely reported to exhi...

  • Review
  • Open Access
14 Citations
7,303 Views
20 Pages

Carbamoyl chlorides are important intermediates, both in the research laboratory and in industrial scale syntheses. The most studied and used are the disubstituted derivatives, incorporating either aryl or alkyl groups (Ar2NCOCl or R2NCOCl). Sometime...

  • Communication
  • Open Access
8 Citations
6,141 Views
10 Pages

Maternal protein components change markedly during mammalian oogenesis. Many of these proteins have yet to be characterized and verified. In this study, a proteomics approach was used to evaluate changes in proteins during oogenesis in the Swamp Buff...

  • Article
  • Open Access
33 Citations
6,555 Views
13 Pages

As the first defence for cells to counteract the toxicity of active oxygen, superoxide dismutase (SOD) plays an important role in the response of living organisms to stress and cell differentiation. One extracellular Cu-ZnSOD (ecCu-ZnSOD), and two Mn...

  • Review
  • Open Access
80 Citations
12,805 Views
18 Pages

Changes in chromatin structure and heritably regulating the gene expression by epigenetic mechanisms, such as histone post-translational modification, are involved in most cellular biological processes. Thus, abnormal regulation of epigenetics is imp...

  • Article
  • Open Access
16 Citations
6,175 Views
14 Pages

Photodynamic therapy (PDT) of the thoracic cavity can be performed in conjunction with surgery to treat cancers of the lung and its pleura. However, illumination of the cavity results in tissue exposure to a broad range of fluence rates. In a murine...

  • Review
  • Open Access
33 Citations
10,785 Views
15 Pages

Chemotaxis, or directional movement towards an extracellular gradient of chemicals, is necessary for processes as diverse as finding nutrients, the immune response, metastasis and wound healing. Activation of G-protein coupled receptors (GPCRs) is at...

  • Review
  • Open Access
100 Citations
15,059 Views
22 Pages

Iron is considered to play a key role in the development and progression of Multiple Sclerosis (MS). In particular, iron that accumulates in myeloid cells after the blood-brain barrier (BBB) seals may contribute to chronic inflammation, oxidative str...

  • Review
  • Open Access
21 Citations
12,307 Views
7 Pages

Aquaporin-2, a member of the aquaporin family, is an arginine vasopressin-regulated water channel expressed in the renal collecting duct, and a promising marker of the concentrating and diluting ability of the kidney. The arginine vasopressin type-2...

  • Article
  • Open Access
178 Citations
17,750 Views
14 Pages

Free Radical Scavenging and Cellular Antioxidant Properties of Astaxanthin

  • Janina Dose,
  • Seiichi Matsugo,
  • Haruka Yokokawa,
  • Yutaro Koshida,
  • Shigetoshi Okazaki,
  • Ulrike Seidel,
  • Manfred Eggersdorfer,
  • Gerald Rimbach and
  • Tuba Esatbeyoglu

Astaxanthin is a coloring agent which is used as a feed additive in aquaculture nutrition. Recently, potential health benefits of astaxanthin have been discussed which may be partly related to its free radical scavenging and antioxidant properties. O...

  • Review
  • Open Access
13 Citations
7,960 Views
9 Pages

Fourier Transform Mass Spectrometry: The Transformation of Modern Environmental Analyses

  • Lucy Lim,
  • Fangzhi Yan,
  • Stephen Bach,
  • Katianna Pihakari and
  • David Klein

Unknown compounds in environmental samples are difficult to identify using standard mass spectrometric methods. Fourier transform mass spectrometry (FTMS) has revolutionized how environmental analyses are performed. With its unsurpassed mass accuracy...

  • Review
  • Open Access
353 Citations
20,565 Views
32 Pages

During the last few decades, improvements in the planning and application of radiotherapy in combination with surgery and chemotherapy resulted in increased survival rates of tumor patients. However, the success of radiotherapy is impaired by two rea...

  • Communication
  • Open Access
16 Citations
7,356 Views
8 Pages

Erdr1 Suppresses Murine Melanoma Growth via Regulation of Apoptosis

  • Joohyun Lee,
  • Min Kyung Jung,
  • Hyun Jeong Park,
  • Kyung Eun Kim and
  • Daeho Cho

Melanoma, one of the aggressive cancers, is known to be resistant to chemotherapy. Because of its aggressive nature, effectively inducing apoptosis is necessary to treat melanoma. Erythroid differentiation regulator 1 (Erdr1) is known to be a stress-...

  • Article
  • Open Access
21 Citations
5,846 Views
14 Pages

Anaerobic digestion using mixed-culture with broader choice of pretreatments for hydrogen (H2) production was investigated. Pretreatment of wastewater sludge by five methods, such as heat, acid, base, microwave and chloroform was conducted using crud...

  • Review
  • Open Access
69 Citations
10,577 Views
16 Pages

miRNAs Regulation and Its Role as Biomarkers in Endometriosis

  • Josep Marí-Alexandre,
  • Dolors Sánchez-Izquierdo,
  • Juan Gilabert-Estellés,
  • Moisés Barceló-Molina,
  • Aitana Braza-Boïls and
  • Juan Sandoval

MicroRNAs (miRNAs) are small non-coding RNAs (18–22 nt) that function as modulators of gene expression. Since their discovery in 1993 in C. elegans, our knowledge about their biogenesis, function, and mechanism of action has increased enormously, esp...

  • Article
  • Open Access
3 Citations
6,079 Views
14 Pages

Overexpression of PRL7D1 in Leydig Cells Causes Male Reproductive Dysfunction in Mice

  • Yaping Liu,
  • Xingyu Su,
  • Jie Hao,
  • Maoxin Chen,
  • Weijia Liu,
  • Xiaogang Liao and
  • Gang Li

Prolactin family 7, subfamily d, member 1 (PRL7D1) is found in mouse placenta. Our recent work showed that PRL7D1 is also present in mouse testis Leydig cells, and the expression of PRL7D1 in the testis exhibits an age-related increase. In the presen...

  • Article
  • Open Access
60 Citations
11,354 Views
10 Pages

Optimizing a Male Reproductive Aging Mouse Model by d-Galactose Injection

  • Chun-Hou Liao,
  • Bing-Huei Chen,
  • Han-Sun Chiang,
  • Chiu-Wei Chen,
  • Mei-Feng Chen,
  • Chih-Chun Ke,
  • Ya-Yun Wang,
  • Wei-Ning Lin,
  • Chi-Chung Wang and
  • Ying-Hung Lin

The d-galactose (d-gal)-injected animal model, which is typically established by administering consecutive subcutaneous d-gal injections to animals for approximately six or eight weeks, has been frequently used for aging research. In addition, this a...

  • Review
  • Open Access
73 Citations
9,434 Views
10 Pages

The diagnostic phenotype of nonalcoholic fatty liver disease (NAFLD)—in particular, the most significant form in terms of prognosis, nonalcoholic steatohepatitis (NASH)—continues to rely on liver tissue evaluation, in spite of remarkable advances in...

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Int. J. Mol. Sci. - ISSN 1422-0067