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13 pages, 321 KB  
Article
An Alternative Framework for Dynamic Mode Decomposition with Control
by Gyurhan Nedzhibov
AppliedMath 2025, 5(2), 60; https://doi.org/10.3390/appliedmath5020060 - 23 May 2025
Viewed by 2010
Abstract
Dynamic mode decomposition with control (DMDc) is a widely used technique for analyzing dynamic systems influenced by external control inputs. It is a recent development and an extension of dynamic mode decomposition (DMD) tailored for input–output systems. In this work, we investigate and [...] Read more.
Dynamic mode decomposition with control (DMDc) is a widely used technique for analyzing dynamic systems influenced by external control inputs. It is a recent development and an extension of dynamic mode decomposition (DMD) tailored for input–output systems. In this work, we investigate and analyze an alternative approach for computing DMDc. Compared to the traditional formulation, the proposed method restructures the computation by decoupling the influence of the state and control components, allowing for a more modular and interpretable implementation. The algorithm avoids compound operator approximations typical of standard approaches, which makes it potentially more efficient in real-time applications or systems with streaming data. The new scheme aims to improve computational efficiency while maintaining the reliability and accuracy of the decomposition. We provide a theoretical proof that the dynamic modes produced by the proposed method are exact eigenvectors of the corresponding Koopman operator. Compared to the standard DMDc approach, the new algorithm is shown to be more efficient, requiring fewer calculations and less memory. Numerical examples are presented to demonstrate the theoretical results and illustrate potential applications of the modified approach. The results highlight the promise of this alternative formulation for advancing data-driven modeling and control in various engineering and scientific domains. Full article
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42 pages, 10326 KB  
Article
Analysis, Forecasting, and System Identification of a Floating Offshore Wind Turbine Using Dynamic Mode Decomposition
by Giorgio Palma, Andrea Bardazzi, Alessia Lucarelli, Chiara Pilloton, Andrea Serani, Claudio Lugni and Matteo Diez
J. Mar. Sci. Eng. 2025, 13(4), 656; https://doi.org/10.3390/jmse13040656 - 25 Mar 2025
Cited by 4 | Viewed by 1554
Abstract
This article presents the data-driven equation-free modeling of the dynamics of a hexafloat floating offshore wind turbine based on the application of dynamic mode decomposition (DMD). The DMD has here been used (i) to extract knowledge from the dynamic system through its modal [...] Read more.
This article presents the data-driven equation-free modeling of the dynamics of a hexafloat floating offshore wind turbine based on the application of dynamic mode decomposition (DMD). The DMD has here been used (i) to extract knowledge from the dynamic system through its modal analysis, (ii) for short-term forecasting (nowcasting) from the knowledge of the immediate past of the system state, and (iii) for system identification and reduced-order modeling. All the analyses are performed on experimental data collected from an operating prototype. The nowcasting method for motions, accelerations, and forces acting on the floating system applies Hankel-DMD, a methodological extension that includes time-delayed copies of the states in an augmented state vector. The system identification task is performed by using Hankel-DMD with a control (Hankel-DMDc), which models the system as externally forced. The influence of the main hyperparameters of the methods is investigated with a full factorial analysis using error metrics analyzing complementary aspects of the prediction. A Bayesian extension of the Hankel-DMD and Hankel-DMDc is introduced by considering the hyperparameters as stochastic variables, enriching the predictions with uncertainty quantification. The results show the capability of the approaches for data-lean nowcasting and system identification, with computational costs being compatible with real-time applications. Accurate predictions are obtained up to 4 wave encounters for nowcasting and 20 wave encounters for system identification, suggesting the potential of the methods for real-time continuous-learning digital twinning and surrogate data-driven reduced-order modeling. Full article
(This article belongs to the Special Issue Advances in Offshore Wind and Wave Energies—2nd Edition)
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16 pages, 7825 KB  
Article
Effects of the Combined Treatment of Trans-2-Hexenal, Ascorbic Acid, and Dimethyl Dicarbonate on the Quality in Fresh-Cut Potatoes (Solanum tuberosum L.) during Storage
by Yu Liu, Jiayi Zhang, Yaqin Zhao, Yinqiu Bao, Zhengguo Wu, Yonghua Zheng and Peng Jin
Foods 2024, 13(10), 1526; https://doi.org/10.3390/foods13101526 - 14 May 2024
Cited by 3 | Viewed by 2186
Abstract
Fresh-cut potatoes (Solanum tuberosum L.) are susceptible to browning and microbial contamination during storage. In this study, the effects of trans-2-hexenal (E2H), ascorbic acid (VC), dimethyl dicarbonate (DMDC), and the combined treatment of E2H, VC, and DMDC on quality deterioration in fresh-cut [...] Read more.
Fresh-cut potatoes (Solanum tuberosum L.) are susceptible to browning and microbial contamination during storage. In this study, the effects of trans-2-hexenal (E2H), ascorbic acid (VC), dimethyl dicarbonate (DMDC), and the combined treatment of E2H, VC, and DMDC on quality deterioration in fresh-cut potatoes were investigated. The response surface methodology (RSM) demonstrated that E2H, VC, and DMDC concentrations of 0.010%, 0.65%, and 240 mg/L, respectively, were the optimum conditions for fresh-cut potato preservation. Further analysis showed that the combined treatment of E2H, VC, and DMDC was the most effective method of reducing quality deterioration in potatoes compared to the control and individual treatments. Furthermore, the combined treatment of E2H, VC, and DMDC could decrease the accumulation of reactive oxygen species (ROS) via improving antioxidant enzyme activities. Meanwhile, energy-metabolism-related enzyme activities and glutamate decarboxylase (GAD) activity were enhanced, while γ-aminobutyric acid transaminase (GABA-T) activity was reduced via the combined treatment of E2H, VC, and DMDC, which contributed to maintaining high energy levels and GABA content in potatoes. These findings suggested that the combined treatment of E2H, VC, and DMDC could protect membrane integrity through enhancing antioxidant capacity, energy levels, and GABA content to maintain quality in fresh-cut potatoes. Full article
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2 pages, 167 KB  
Abstract
Analysis and Prediction of Postprandial Metabolic Response to Multiple Dietary Challenges Using Dynamic Mode Decomposition
by Viktor Skantze, Mats Jirstrand, Carl Brunius, Ann-Sofie Sandberg, Rikard Landberg and Mikael Wallman
Proceedings 2023, 91(1), 38; https://doi.org/10.3390/proceedings2023091038 - 15 Nov 2023
Viewed by 1095
Abstract
Background: In the field of precision nutrition, predicting high-dimensional metabolic response to diet and identifying groups of differential responders are two highly desirable steps towards developing tailored dietary strategies. However, proper data analysis tools are currently lacking, especially for complex settings such as [...] Read more.
Background: In the field of precision nutrition, predicting high-dimensional metabolic response to diet and identifying groups of differential responders are two highly desirable steps towards developing tailored dietary strategies. However, proper data analysis tools are currently lacking, especially for complex settings such as crossover studies. Current methods of analysis often rely on matrix or tensor decompositions, which are well suited for identifying differential responders but lacking in predictive power, or on dynamical systems modelling, which may be used for prediction but typically requires detailed mechanistic knowledge of the system under study. Objectives: To remedy these shortcomings, we aimed to explore dynamic mode decomposition (DMD), which is a recent, data driven method for deriving low-rank linear dynamical systems from high dimensional data. Methods: To allow integration of complex data from several dietary inputs to the metabolic system, we combine parametric DMD (pDMD) with DMD with control (DMDc). The resulting method allows (i) to predict the postprandial metabolic response of a new diet given only the metabolic baseline and dietary input, and (ii) to identify inter-individual differences in metabolic regulation, useful in determining metabotypes, i.e., metabolic phenotypes in dynamic data. To our knowledge, this is the first time DMD has been applied to metabolomics data. Results: pDMDc enabled a data-driven construction of low-dimensional dynamical models, able to capture the underlying dynamics of the metabolome after three dietary challenges. We demonstrate the utility and accuracy of the model in a crossover study setting on both measured and simulated data. Using simulated data, metabolic response to a new diet was accurately predicted having trained on four diets, with an average cosine similarity score of 0.6 (SD = 0.27). In measured data, we identified previously published metabolic groups with 100% overlap. Discussion: Accurate predictions via pDMDc require data from several dietary exposures with large variation, which can be costly to collect to confirm the efficacy of the method. A possible remedy is to share data among individuals using the mixed-effects framework. Employing pDMDc paves the way towards using control theory to approach PN by estimating the optimal input given a target metabolite trajectory. Full article
(This article belongs to the Proceedings of The 14th European Nutrition Conference FENS 2023)
14 pages, 639 KB  
Article
An Improved Approach for Implementing Dynamic Mode Decomposition with Control
by Gyurhan Nedzhibov
Computation 2023, 11(10), 201; https://doi.org/10.3390/computation11100201 - 8 Oct 2023
Cited by 7 | Viewed by 4751
Abstract
Dynamic Mode Decomposition with Control is a powerful technique for analyzing and modeling complex dynamical systems under the influence of external control inputs. In this paper, we propose a novel approach to implement this technique that offers computational advantages over the existing method. [...] Read more.
Dynamic Mode Decomposition with Control is a powerful technique for analyzing and modeling complex dynamical systems under the influence of external control inputs. In this paper, we propose a novel approach to implement this technique that offers computational advantages over the existing method. The proposed scheme uses singular value decomposition of a lower order matrix and requires fewer matrix multiplications when determining corresponding approximation matrices. Moreover, the matrix of dynamic modes also has a simpler structure than the corresponding matrix in the standard approach. To demonstrate the efficacy of the proposed implementation, we applied it to a diverse set of numerical examples. The algorithm’s flexibility is demonstrated in tests: accurate modeling of ecological systems like Lotka-Volterra, successful control of chaotic behavior in the Lorenz system and efficient handling of large-scale stable linear systems. This showcased its versatility and efficacy across different dynamical systems. Full article
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20 pages, 1078 KB  
Article
Low-Order Electrochemical State Estimation for Li-Ion Batteries
by Higuatzi Moreno and Alexander Schaum
Algorithms 2023, 16(2), 73; https://doi.org/10.3390/a16020073 - 28 Jan 2023
Cited by 4 | Viewed by 2273
Abstract
Batteries are complex systems involving spatially distributed microscopic mechanisms on different time scales whose adequate interplay is essential to ensure a desired functioning. Describing these phenomena yields nonlinearly coupled partial differential equations whose numerical solution requires considerable effort and computation time, making it [...] Read more.
Batteries are complex systems involving spatially distributed microscopic mechanisms on different time scales whose adequate interplay is essential to ensure a desired functioning. Describing these phenomena yields nonlinearly coupled partial differential equations whose numerical solution requires considerable effort and computation time, making it an infeasible solution for real-time applications. Anyway, having information about the internal electrochemical states of the battery can pave the way for many different advanced monitoring and control strategies with a big potential for improving efficiency and longevity. For such purposes, in the present paper, a combination of a low-order representation of the essential dynamics associated to the internal electrochemical mechanisms based on Dynamic Mode Decomposition for control (DMDc) is proposed to obtain an improved equivalent circuit model (ECM) representation with continuously updated parameters and combined with an extended Kalman Filter (EKF). The model-order reduction step extensively exploits the model structure, yielding a well structured low-order representation without artificial numerical correlations. The performance of the proposed method is illustrated with numerical simulations based on a well-established reference model, showing its potential usefulness in real-time applications requiring knowledge of the internal electrochemical states besides the state-of-charge. Full article
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20 pages, 33405 KB  
Article
Diffusion Model with Detail Complement for Super-Resolution of Remote Sensing
by Jinzhe Liu, Zhiqiang Yuan, Zhaoying Pan, Yiqun Fu, Li Liu and Bin Lu
Remote Sens. 2022, 14(19), 4834; https://doi.org/10.3390/rs14194834 - 28 Sep 2022
Cited by 68 | Viewed by 12434
Abstract
Remote sensing super-resolution (RSSR) aims to improve remote sensing (RS) image resolution while providing finer spatial details, which is of great significance for high-quality RS image interpretation. The traditional RSSR is based on the optimization method, which pays insufficient attention to small targets [...] Read more.
Remote sensing super-resolution (RSSR) aims to improve remote sensing (RS) image resolution while providing finer spatial details, which is of great significance for high-quality RS image interpretation. The traditional RSSR is based on the optimization method, which pays insufficient attention to small targets and lacks the ability of model understanding and detail supplement. To alleviate the above problems, we propose the generative Diffusion Model with Detail Complement (DMDC) for RS super-resolution. Firstly, unlike traditional optimization models with insufficient image understanding, we introduce the diffusion model as a generation model into RSSR tasks and regard low-resolution images as condition information to guide image generation. Next, considering that generative models may not be able to accurately recover specific small objects and complex scenes, we propose the detail supplement task to improve the recovery ability of DMDC. Finally, the strong diversity of the diffusion model makes it possibly inappropriate in RSSR, for this purpose, we come up with joint pixel constraint loss and denoise loss to optimize the direction of inverse diffusion. The extensive qualitative and quantitative experiments demonstrate the superiority of our method in RSSR with small and dense targets. Moreover, the results from direct transfer to different datasets also prove the superior generalization ability of DMDC. Full article
(This article belongs to the Special Issue Computer Vision and Machine Learning Application on Earth Observation)
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22 pages, 1851 KB  
Review
Chemical Methods for Microbiological Control of Winemaking: An Overview of Current and Future Applications
by Francesco Tedesco, Gabriella Siesto, Rocchina Pietrafesa, Patrizia Romano, Rosanna Salvia, Carmen Scieuzo, Patrizia Falabella and Angela Capece
Beverages 2022, 8(3), 58; https://doi.org/10.3390/beverages8030058 - 19 Sep 2022
Cited by 29 | Viewed by 10988
Abstract
Preservation technologies for winemaking have relied mainly on the addition of sulfur dioxide (SO2), in consequence of the large spectrum of action of this compound, linked to the control of undesirable microorganisms and the prevention of oxidative phenomena. However, its potential [...] Read more.
Preservation technologies for winemaking have relied mainly on the addition of sulfur dioxide (SO2), in consequence of the large spectrum of action of this compound, linked to the control of undesirable microorganisms and the prevention of oxidative phenomena. However, its potential negative effects on consumer health have addressed the interest of the international research on alternative treatments to substitute or minimize the SO2 content in grape must and wine. This review is aimed at analyzing chemical methods, both traditional and innovative, useful for the microbiological stabilization of wine. After a preliminary description of the antimicrobial and technological properties of SO2, the additive traditionally used during wine production, the effects of the addition (in must and wine) of other compounds officially permitted in winemaking, such as sorbic acid, dimethyl dicarbonate (DMDC), lysozyme and chitosan, are discussed and evaluated. Furthermore, other substances showing antimicrobial properties, for which the use for wine microbiological stabilization is not yet permitted in EU, are investigated. Even if these treatments exhibit a good efficacy, a single compound able to completely replace SO2 is not currently available, but a combination of different procedures might be useful to reduce the sulfite content in wine. Among the strategies proposed, particular interest is directed towards the use of insect-based chitosan as a reliable alternative to SO2, mainly due to its low environmental impact. The production of wines containing low sulfite levels by using pro-environmental practices can meet both the consumers’ expectations, who are even more interested in the healthy traits of foods, and wine-producers’ needs, who are interested in the use of sustainable practices to promote the profile of their brand. Full article
(This article belongs to the Special Issue Role of Microorganisms in Wine Production: From Vine to Wine)
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14 pages, 5495 KB  
Article
Dimethyl Dicarbonate as a Food Additive Effectively Inhibits Geotrichum citri-aurantii of Citrus
by Shuqi Liu, Deyao Zhang, Yuqing Wang, Fan Yang, Juan Zhao, Yujie Du, Zhonghuan Tian and Chaoan Long
Foods 2022, 11(15), 2328; https://doi.org/10.3390/foods11152328 - 4 Aug 2022
Cited by 8 | Viewed by 3164
Abstract
Dimethyl dicarbonate (DMDC), a food additive, can be added to a variety of foods as a preservative. This study aimed to evaluate the inhibitory effects of DMDC on Geotrichum citri-aurantii in vitro and in vivo, as well as the potential antifungal mechanism. In [...] Read more.
Dimethyl dicarbonate (DMDC), a food additive, can be added to a variety of foods as a preservative. This study aimed to evaluate the inhibitory effects of DMDC on Geotrichum citri-aurantii in vitro and in vivo, as well as the potential antifungal mechanism. In vitro experiments showed that 250 mg/L DMDC completely inhibited the growth of G. citri-aurantii and significantly inhibited spore germination by 96.33%. The relative conductivity and propidium iodide (PI) staining results showed that DMDC at 250 mg/L increased membrane permeability and damaged membrane integrity. Malondialdehyde (MDA) content and 2, 7-Dichlorodihydrofluorescein diacetate (DCHF-DA) staining determination indicated that DMDC resulted in intracellular reactive oxygen species (ROS) accumulation and lipid peroxidation. Scanning electron microscopy (SEM) analysis found that the mycelia were distorted and the surface collapsed after DMDC treatment. Morphological changes in mitochondria and the appearance of cavities were observed by transmission electron microscopy (TEM). In vivo, 500 mg/L DMDC and G. citri-aurantii were inoculated into the wounds of citrus. After 7 days of inoculation, DMDC significantly reduced the disease incidence and disease diameter of sour rot. The storage experiment showed that DMDC treatment did not affect the appearance and quality of fruits. In addition, we found that DMDC at 500 mg/L significantly increased the activity of citrus defense-related enzymes, including peroxidase (POD) and phenylalanine ammonia-lyase (PAL). Therefore, DMDC could be used as an effective method to control citrus sour rot. Full article
(This article belongs to the Section Food Quality and Safety)
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3 pages, 202 KB  
Proceeding Paper
Partitioning of Net Ecosystem Exchange Using Dynamic Mode Decomposition and Time Delay Embedding
by Maha Shadaydeh, Joachim Denzler and Mirco Migliavacca
Eng. Proc. 2022, 18(1), 13; https://doi.org/10.3390/engproc2022018013 - 21 Jun 2022
Viewed by 1763
Abstract
Ecosystem respiration (Reco) represents a major component of the global carbon cycle. An accurate estimation of Reco dynamics is necessary for a better understanding of ecosystem–climate interactions and the impact of climate extremes on ecosystems. This paper proposes a new data-driven method for [...] Read more.
Ecosystem respiration (Reco) represents a major component of the global carbon cycle. An accurate estimation of Reco dynamics is necessary for a better understanding of ecosystem–climate interactions and the impact of climate extremes on ecosystems. This paper proposes a new data-driven method for the estimation of the nonlinear dynamics of Reco using the method of dynamic mode decomposition with control input (DMDc). The method is validated on the half-hourly Fluxnet 2015 data. The model is first trained on the night-time net ecosystem exchange data. The day-time Reco values are then predicted using the obtained model with future values of a control input such as air temperature and soil water content. To deal with unobserved drivers of Reco other than the user control input, the method uses time-delay embedding of the history of Reco and the control input. Results indicate that, on the one hand, the prediction accuracy of Reco dynamics using DMDc is comparable to state-of-the-art deep learning-based methods, yet it has the advantages of being a simple and almost hyper-parameter-free method with a low computational load. On the other hand, the study of the impact of different control inputs on Reco dynamics showed that for most of the studied Fluxnet sites, air temperature is a better long-term predictor of Reco, while using soil water content as control input produced better short-term prediction accuracy. Full article
(This article belongs to the Proceedings of The 8th International Conference on Time Series and Forecasting)
19 pages, 14668 KB  
Article
Data-Driven Pulsatile Blood Flow Physics with Dynamic Mode Decomposition
by Milad Habibi, Scott T. M. Dawson and Amirhossein Arzani
Fluids 2020, 5(3), 111; https://doi.org/10.3390/fluids5030111 - 14 Jul 2020
Cited by 35 | Viewed by 8189
Abstract
Dynamic mode decomposition (DMD) is a purely data-driven and equation-free technique for reduced-order modeling of dynamical systems and fluid flow. DMD finds a best fit linear reduced-order model that represents any given spatiotemporal data. In DMD, each mode evolves with a fixed frequency [...] Read more.
Dynamic mode decomposition (DMD) is a purely data-driven and equation-free technique for reduced-order modeling of dynamical systems and fluid flow. DMD finds a best fit linear reduced-order model that represents any given spatiotemporal data. In DMD, each mode evolves with a fixed frequency and therefore DMD modes represent physically meaningful structures that are ranked based on their dynamics. The application of DMD to patient-specific cardiovascular flow data is challenging. First, the input flow rate is unsteady and pulsatile. Second, the flow topology can change significantly in different phases of the cardiac cycle. Finally, blood flow in patient-specific diseased arteries is complex and often chaotic. The objective of this study was to overcome these challenges using our proposed multistage dynamic mode decomposition with control (mDMDc) method and use this technique to study patient-specific blood flow physics. The inlet flow rate was considered as the controller input to the systems. Blood flow data were divided into different stages based on the inlet flow waveform and DMD with control was applied to each stage. The system was augmented to consider both velocity and wall shear stress (WSS) vector data, and therefore study the interaction between the coherent structures in velocity and near-wall coherent structures in WSS. First, it was shown that DMD modes can exactly represent the analytical Womersley solution for incompressible pulsatile flow in tubes. Next, our method was applied to image-based coronary artery stenosis and cerebral aneurysm models where complex blood flow patterns are anticipated. The flow patterns were studied using the mDMDc modes and the reconstruction errors were reported. Our augmented mDMDc framework could capture coherent structures in velocity and WSS with a fewer number of modes compared to the traditional DMD approach and demonstrated a close connection between the velocity and WSS modes. Full article
(This article belongs to the Special Issue Classical and Modern Topics in Fluid Dynamics and Transport Phenomena)
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22 pages, 8003 KB  
Article
Data-Driven Model Reduction for Coupled Flow and Geomechanics Based on DMD Methods
by Anqi Bao, Eduardo Gildin, Abhinav Narasingam and Joseph S. Kwon
Fluids 2019, 4(3), 138; https://doi.org/10.3390/fluids4030138 - 19 Jul 2019
Cited by 15 | Viewed by 4462
Abstract
Learning reservoir flow dynamics is of primary importance in creating robust predictive models for reservoir management including hydraulic fracturing processes. Physics-based models are to a certain extent exact, but they entail heavy computational infrastructure for simulating a wide variety of parameters and production [...] Read more.
Learning reservoir flow dynamics is of primary importance in creating robust predictive models for reservoir management including hydraulic fracturing processes. Physics-based models are to a certain extent exact, but they entail heavy computational infrastructure for simulating a wide variety of parameters and production scenarios. Reduced-order models offer computational advantages without compromising solution accuracy, especially if they can assimilate large volumes of production data without having to reconstruct the original model (data-driven models). Dynamic mode decomposition (DMD) entails the extraction of relevant spatial structure (modes) based on data (snapshots) that can be used to predict the behavior of reservoir fluid flow in porous media. In this paper, we will further enhance the application of the DMD, by introducing sparse DMD and local DMD. The former is particularly useful when there is a limited number of sparse measurements as in the case of reservoir simulation, and the latter can improve the accuracy of developed DMD models when the process dynamics show a moving boundary behavior like hydraulic fracturing. For demonstration purposes, we first show the methodology applied to (flow only) single- and two-phase reservoir models using the SPE10 benchmark. Both online and offline processes will be used for evaluation. We observe that we only require a few DMD modes, which are determined by the sparse DMD structure, to capture the behavior of the reservoir models. Then, we applied the local DMDc for creating a proxy for application in a hydraulic fracturing process. We also assessed the trade-offs between problem size and computational time for each reservoir model. The novelty of our method is the application of sparse DMD and local DMDc, which is a data-driven technique for fast and accurate simulations. Full article
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