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Microorganisms publishes Special Issues to create collections of papers on specific topics, with the aim of building a community of authors and readers to discuss the latest research and develop new ideas and research directions. Special Issues are led by Guest Editors, who are experts on the topic and all Special Issue submissions follow MDPI's standard editorial process. The journal’s Editor-in-Chief and/or designated Editorial Board Member will oversee Guest Editor appointments and Special Issue proposals, checking their content for relevance and ensuring the suitability of the material for the journal. The papers published in a Special Issue will be collected and displayed on a dedicated page of the journal’s website. Further information on MDPI's Special Issue policies and Guest Editor responsibilities can be found here. For any inquiries related to a Special Issue, please contact the Editorial Office.

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Sustainable Approaches to Mitigate Antimicrobial Resistance in the Environment

edited by

Emma Murphy

and

Gustavo Fehrenbach

submission deadline 30 Apr 2026 | 2 articles | Viewed by 3555 | Submission Open

Keywords: antimicrobial resistance; environment; probiotics; antibiotic; bioremediation

(This special issue belongs to the Section Environmental Microbiology)

Effect of Microbial Communities for Environmental Protection and Development of Agriculture, Second Edition

edited by Alejandro Rodriguez-Sanchez

submission deadline 30 Apr 2026 | 3 articles | Viewed by 3522 | Submission Open

Keywords: environmental microbial communities; environmental protection; agriculture potentiation; bioremediation; ecosystem functioning; biotic and abiotic stresses

(This special issue belongs to the Section Environmental Microbiology)

New Advances in Microalgae Biotechnology—Increasing Productivity Towards Achieving a More Profitable Production Chain

edited by

Carlos Yure B. Oliveira

submission deadline 30 Apr 2026 | 2 articles | Viewed by 2568 | Submission Open

Keywords: biomass; food; nutraceuticals; biorefinery; bioeconomy

(This special issue belongs to the Section Microbial Biotechnology)

Bacterial Motility

edited by

Rama Bansil

submission deadline 30 Apr 2026 | 1 articles | Viewed by 2380 | Submission Open

Keywords: bacterial movement; bacterial motility; technological and biomedical applications; bacteria motors; chemotaxis; swarming motility; hydrodynamics of bacteria swimming mechanisms; biomimetic swimmers

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Probiotics, Gut Microbiota, and Health

edited by

Massimiliano Marazzato

and Claudio de Simone

submission deadline 30 Apr 2026 | 1 articles | Viewed by 2048 | Submission Open

Keywords: probiotic; gut microbiota; intestinal microbiome; host health

(This special issue belongs to the Section Gut Microbiota)

AI in Developing Diagnostics, Antiviral Therapies, Antimicrobial Resistance, and Vaccines for Viral Diseases in Humans, Animals, and Birds

edited by

Maged Gomaa Hemida

submission deadline 30 Apr 2026 | 1 articles | Viewed by 1711 | Submission Open

Keywords: artificial intelligence; viral diagnostics; antiviral drug discovery; vaccine development; genomic surveillance; machine learning; computational virology; predictive modeling; immune response prediction; One Health

(This special issue belongs to the Section Virology)

Pseudomonas Biology and Biodiversity

edited by

Dimitris Mossialos

submission deadline 30 Apr 2026 | 1 articles | Viewed by 1661 | Submission Open

Keywords: Pseudomonas; biodiversity; omic technologies; community structure; phylogenomics; metagenomics; biotechnological applications

(This special issue belongs to the Section Plant Microbe Interactions)

The Molecular Mechanisms Regulating Stress-Adaptive Responses in Bacteria

edited by

Ewa Laskowska

and

Arumugam Priya

submission deadline 30 Apr 2026 | 3 articles | Viewed by 1639 | Submission Open

Keywords: biofilms; strategies to combat antimicrobial resistance; bacterial stress adaptation

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Mycosis and Antifungal Agents

edited by Victor Silva and Patrício Christian Godoy-Martínez

submission deadline 30 Apr 2026 | 2 articles | Viewed by 1639 | Submission Open

Keywords: mycosis; antifungal agents; antifungal resistance

(This special issue belongs to the Section Medical Microbiology)

Emerging Trends in Arboviral Research: Surveillance, Diagnostics, Virus–Host Interactions, and Therapeutic Strategies

edited by Flávia Barreto Dos Santos and

Priscila Conrado Guerra Nunes

submission deadline 30 Apr 2026 | 1 articles | Viewed by 1240 | Submission Open

Keywords: arthropod-borne viruses; diagnostics; surveillance; vector– host interactions; pathogenesis; viral evolution; therapeutic strategies; antivirus

(This special issue belongs to the Section Virology)

Advances in Foodborne Pathogenic Bacteria Microcosm Mapping and Its Interrelation Within the Food Production Setting

edited by

Marios Mataragas

Nikolaos D. Andritsos

and

Spiros Paramithiotis

submission deadline 30 Apr 2026 | 1 articles | Viewed by 1127 | Submission Open

Keywords: foodborne pathogenic bacteria; food processing; next-generation

(This special issue belongs to the Section Food Microbiology)

Research of Soil Microbial Communities

edited by Rodrigo Gouveia Taketani

submission deadline 30 Apr 2026 | 1 articles | Viewed by 701 | Submission Open

Keywords: soil microbial community; biogeochemical cycle; carbon sequestration; sustainable agriculture; microbial ecology; soil fertility; metagenome; nutrient cycling

(This special issue belongs to the Section Environmental Microbiology)

Silver Nanoparticles as Antimicrobial Agents

edited by

Karen Pillay

and

Suresh Babu Naidu Krishna

submission deadline 30 Apr 2026 | Viewed by 641 | Submission Open

Keywords: silver nanoparticles; antimicrobial; antibiotic; mechanism; resistance; infection prevention; biocompatibility; biofilm

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Advances in Magnetotactic Bacteria

edited by Hongmiao Pan

submission deadline 30 Apr 2026 | 1 articles | Viewed by 601 | Submission Open

Keywords: magnetotactic bacteria; multicellular magnetotactic prokaryotes; magnetically responsive protists; magnetosome; biomineralization; culture; genome; evolution; environmental adaptability strategy; ecological function; magnetofossil; metagenome assembled genomes

(This special issue belongs to the Section Environmental Microbiology)

Milk, Microbes, and Medicine: The Triad Shaping Infant Health

edited by

Felicia Trofin

and

Olivia Dorneanu

submission deadline 30 Apr 2026 | Viewed by 499 | Submission Open

Keywords: human milk; breast milk; microbiome; breastfeeding; infant; gut microbiota; microorganisms; maternal-infant biome; immunity; antibodies; bacteria

(This special issue belongs to the Section Microbiomes)

Renaissance of Kinetic Studies in Modern Microbiology

edited by

Nicolai S. Panikov

submission deadline 30 Apr 2026 | Viewed by 457 | Submission Open

Keywords: growth curves; kinetics; latent and stationary phase; survival and death; product formation; spontaneous mutations; genetic sweeps; cell cycles; differentiation into subpopulations; mathematical simulations; genome-scale models; transcriptomics; proteomics

(This special issue belongs to the Section Microbial Biotechnology)

Advances in Soil Microbial Ecology, 3rd Edition

edited by Jie Wang and

Yadong Xu

submission deadline 30 Apr 2026 | 2 articles | Viewed by 457 | Submission Open

Keywords: soil microorganisms; microbial ecology; microbial community; microbial diversity; microbial interactions; soil ecosystem; nutrient cycle

(This special issue belongs to the Section Environmental Microbiology)

Emerging Viruses: Detection, Genomic Analysis and Antiviral Activities

edited by

Tiago Souza Salles

and Monica Ferreira Moreira

submission deadline 30 Apr 2026 | 1 articles | Viewed by 410 | Submission Open

Keywords: arbovirus; dengue; chikungunya; Zika; yellow fever; Ilheus fever; St. Louis encephalitis; West Nile fever; genomics; transcriptomics; vector– virus interactions; vector control; insecticides and insecticide resistance; discovery of antivirals from natural products

(This special issue belongs to the Section Virology)

Infectious Diseases in Animals

edited by Lilian Gregory and Huber Rizzo

submission deadline 30 Apr 2026 | Viewed by 342 | Submission Open

Keywords: neosporosis; tuberculosis; coxiellosis; dengue; emerging diseases due to climate changes

(This special issue belongs to the Section Veterinary Microbiology)

Microbial Visualization and Biosensing

edited by

Tianyu Jiang

submission deadline 30 Apr 2026 | Viewed by 301 | Submission Open

Keywords: microbial visualization; imaging tools; bioluminescence; fluorescence; colorimetric; biosensing in metabolic engineering; biosensing in medicine and pharmacology; biosensing in environmental health monitoring; biosensing in food safety

(This special issue belongs to the Section Microbial Biotechnology)

Experimental and Clinical Treatment of Leishmaniasis

edited by Katharine Carter and

Ramona Hurdyal

submission deadline 30 Apr 2026 | Viewed by 281 | Submission Open

Keywords: drug treatment; immunotherapy; non-drug-based treatment methods

(This special issue belongs to the Section Medical Microbiology)

Bacteriophages in Diverse Environments—Physiology, Genetics, and Potential Biotechnological Applications

edited by

Alicja Wegrzyn

and

Łukasz Grabowski

submission deadline 30 Apr 2026 | Viewed by 279 | Submission Open

Keywords: biology of bacteriophages; biodiversity of bacteriophages; regulation of bacteriophage development

(This special issue belongs to the Section Environmental Microbiology)

Bioaerosols and Their Health Impacts

edited by

Mingyu Wang

Changliang Nie

, Xueyun Geng and Ling Li

submission deadline 30 Apr 2026 | Viewed by 224 | Submission Open

Keywords: bioaerosols; pathogens; human health; risk assessment; exposure assessment; dose– response model; allergy

(This special issue belongs to the Section Environmental Microbiology)

HTLV Infection and Associated Neurological Diseases

edited by Abelardo de Queiroz Campos Araujo and Marcus Tulius Teixeira da Silva

submission deadline 30 Apr 2026 | Viewed by 203 | Submission Open

Keywords: HTLV-I Infections; HTLV-II Infections; tropical spastic paraparesis; myelopathy/tropical spastic paraparesis; neurologic manifestations; virus integration; disease progression; epidemiology; immunopathology; antiviral agents

(This special issue belongs to the Section Medical Microbiology)

Probiotics: The Current State of Scientific Knowledge (2nd Edition)

edited by

Jacek Piatek

submission deadline 30 Apr 2026 | Viewed by 184 | Submission Open

Keywords: microbiota modification; microbiological techniques for identifying microorganisms; probiotics in therapy; probiotics and antibiotic resistance

(This special issue belongs to the Section Gut Microbiota)

Coronavirus: Epidemiology, Diagnosis, Pathogenesis and Control

edited by

Ivo Nikolaev Sirakov

Stoyan Angelov Shishkov

and Kalina Shishkova

submission deadline 30 Apr 2026 | Viewed by 167 | Submission Open

Keywords: coronaviruses; epidemiology; SARS-CoV-2; hosts; molecular methods; diagnostics; serology; pandemic spread; post-pandemic

(This special issue belongs to the Section Virology)

Medical Microbial Infections and Antimicrobial Resistance

edited by

Irina Gheorghe-Barbu

and

Marina Ionela (Ilie) Nedea

submission deadline 30 Apr 2026 | Viewed by 122 | Submission Open

Keywords: antimicrobial resistance; multidrug-resistant pathogens; bacterial and fungal infections; virulence factors; biofilm; antifungal resistance; novel antimicrobials; nanotechnology; infection control; host– pathogen interaction

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

State-of-the-Art Antimicrobial Agents and Resistance Research in France

edited by Olivier Chesneau and Didier Hocquet

submission deadline 30 Apr 2026 | Viewed by 118 | Submission Open

Keywords: antimicrobial resistance (AMR); antibiotic discovery; One Health approach; emerging resistance mechanisms; AMR surveillance; novel antimicrobial agents; bacterial virulence factors; therapeutic alternatives; molecular epidemiology; antimicrobial stewardship

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

The Role of Probiotics in Animal Health

edited by

Jose Manuel Silvan

and

Gintare Zakariene

submission deadline 30 Apr 2026 | Viewed by 115 | Submission Open

Keywords: probiotic strains; microbiota– host interaction; feed additive; antibiotic resistance; animal health; growth performance; meat quality

(This special issue belongs to the Section Veterinary Microbiology)

Leptospira and Leptospirosis: Pathogenesis and Biology Research

edited by

Cristiane Rodrigues Guzzo

submission deadline 30 Apr 2026 | Viewed by 111 | Submission Open

Keywords: leptospirosis; zoonoses; virulence; pathogenesis; diagnosis; outer membrane vesicles (OMVs); treatment; signaling; structural biology; bioinformatics

(This special issue belongs to the Section Veterinary Microbiology)

Gut Microbiota and Diseases

edited by

Kyunam Kim

submission deadline 30 Apr 2026 | Viewed by 103 | Submission Open

Keywords: gut microbiota; small intestinal bacterial overgrowth; intestinal inflammation; microbial metabolites

(This special issue belongs to the Section Gut Microbiota)

Food Microbiology: State-of-the-Art Research in Italy

edited by

Antonio Bevilacqua

and

Vincenzina Fusco

submission deadline 30 Apr 2026 | Viewed by 96 | Submission Open

Keywords: food microbiology; foodborne pathogens; food safety; food preservation; molecular methods; genomics; probiotics; predictive microbiology

(This special issue belongs to the Section Food Microbiology)

Microbial Fermentation, Food and Food Sustainability, 2nd Edition

edited by

Marco Montemurro

and

Carlo Giuseppe Rizzello

submission deadline 30 Apr 2026 | Viewed by 95 | Submission Open

Keywords: food; production; fermentation; microbial community; bioprocesses

(This special issue belongs to the Section Food Microbiology)

Harnessing Phages: Discovery, Design, and Deployment

edited by Keith E. Shearwin and Nan Hao

submission deadline 30 Apr 2026 | Viewed by 86 | Submission Open

Keywords: bacteriophage ; phage biology ; phage therapy ; temperate phages ; phage engineering ; host– phage interactions ; biofilms ; antimicrobial resistance ; synthetic biology ; phage discovery

(This special issue belongs to the Section Microbial Biotechnology)

Antifungal Resistance: Challenges in Diagnosis and Management

edited by

Aditya K. Gupta

submission deadline 30 Apr 2026 | Viewed by 85 | Submission Open

Keywords: mycoses; antifungal agents; drug resistance; fungal microbial sensitivity tests; antimicrobial stewardship; One Health

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Plant Extracts and Antimicrobials, Third Edition

edited by

Paola Angelini

Giancarlo Angeles Flores

and

Roberto Venanzoni

submission deadline 30 Apr 2026 | Viewed by 82 | Submission Open

Keywords: antibacterials; antifungals; antivirals; bioactive compounds; biofilms; dermatophytes; drug resistance; food; beverages and supplements; pathogenics; mode of action; plant extracts; screening; spices

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Yeast: Diversity and Biotechnological Applications in Food

edited by

Jenyffer M. C. Guerra

and Tânia Lúcia Montenegro Stamford

submission deadline 30 Apr 2026 | Viewed by 75 | Submission Open

Keywords: yeast; biotechnology; fermentation; unconventional yeasts; biotransformation; food biotechnology; industrial microbiology

(This special issue belongs to the Section Microbial Biotechnology)

Advances in Microbiology of Eye Infections

edited by Victor Manuel Bautista-de-Lucío

submission deadline 30 Apr 2026 | Viewed by 71 | Submission Open

Keywords: ocular infections ; microorganisms interaction ; pathogenicity mechanisms ; virulence factors ; antibiotic resistance

(This special issue belongs to the Section Medical Microbiology)

Microbiome Data and Metadata Sharing for Reproducible Research

edited by

Haruo Suzuki

submission deadline 30 Apr 2026 | Viewed by 69 | Submission Open

Keywords: microbiome data sharing; metadata standards; reproducible research; meta-analysis; microbiome; urban microbiome

(This special issue belongs to the Section Microbiomes)

Gut Microbiota and Antibiotic Resistance in Ruminants

edited by

Todd Riley Callaway

submission deadline 30 Apr 2026 | Viewed by 61 | Submission Open

Keywords: gastrointestinal microbes; resistance physiology; microbial ecology; microbial physiology; antimicrobial resistance; One Health; alternatives to antimicrobials; interventions

(This special issue belongs to the Section Veterinary Microbiology)

Innovative Tools for Tailored Microbial Cell Factories

edited by Shuobo Shi

submission deadline 30 Apr 2026 | Viewed by 59 | Submission Open

Keywords: microbial cell factories; genome editing; synthetic biology; AI-driven optimization; metabolic engineering

(This special issue belongs to the Section Microbial Biotechnology)

Microbiota in Human Health and Disease, 2nd Edition

edited by Claire Morgan and

Paul D. Facey

submission deadline 30 Apr 2026 | Viewed by 54 | Submission Open

Keywords: microbiota; probiotics; prebiotics; synbiotics; biotherapeutics; probiogenomics; health and disease

(This special issue belongs to the Section Medical Microbiology)

Neurotropic and Latent Viruses in Animal Hosts: Ecology, Persistence, and Zoonotic Potential

edited by

Jelena Prpić

submission deadline 30 Apr 2026 | Viewed by 54 | Submission Open

Keywords: herpesviruses; One Health; neurotropic viruses; latent viruses

(This special issue belongs to the Section Veterinary Microbiology)

Decoding Resistance: From Molecular Detection to Clinical Control

edited by Thiago Pavoni Gomes, V. Zahner and

Raiane Cardoso Chamon

submission deadline 30 Apr 2026 | Viewed by 54 | Submission Open

Keywords: antimicrobial resistance; molecular detection; carbapenemase; plasmid; genomic surveillance; metagenomics; infection control; One Health; AMR epidemiology; drug resistance mechanisms

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Microbial Biotechnology: The Biodiversity, Properties and Benefits of Microorganisms in Medical, Clinical, Food and Environmental Fields, 2nd Edition

edited by

Marcelo Andrés Umsza-Guez

and

Karina Teixeira Magalhães-Guedes

submission deadline 30 Apr 2026 | Viewed by 50 | Submission Open

Keywords: microbial biotechnology; microorganism diversity; biotechnological applications; functional foods; pathogen control

(This special issue belongs to the Section Microbial Biotechnology)

State-of-the-Art Antimicrobial Agents and Resistance Research in Germany

edited by

Catalina-Suzana Stingu

submission deadline 30 Apr 2026 | Viewed by 50 | Submission Open

Keywords: antimicrobials; antimicrobial resistance (AMR); antibiotics; antibiotic-resistant bacteria (ARBs); antibiotic-resistant genes (ARGs); antimicrobial peptides; bacteriophage therapy

(This special issue belongs to the Section Antimicrobial Agents and Resistance)

Advances in Host Gut Microbiota—2nd Edition

edited by

Jean-Paul Motta

and Marion Garofalo

submission deadline 30 Apr 2026 | Viewed by 49 | Submission Open

Keywords: host– microbiota interactions; infectious and inflammatory gut disorders; microbiota ageing; intestinal epithelium

(This special issue belongs to the Section Gut Microbiota)

Advancements in Pathogenic Bacteria: Detection, Genomic Analysis, and Antibiotic Resistance—2nd Edition

edited by Vlademir Vicente Cantarelli

submission deadline 30 Apr 2026 | Viewed by 38 | Submission Open

Keywords: bacterial infections; immunocompromised patients; identification methods; mass spectrometry; genomic analysis; antimicrobial resistance (AMR); faster detection methods; pathogenic bacteria; new bacterial pathogens

(This special issue belongs to the Section Medical Microbiology)

Virulence-Associated Genes, Pathogenesis and Immunoevasion Mechanisms of African Swine Fever Virus

edited by

Lihua Wang

submission deadline 30 Apr 2026 | Viewed by 34 | Submission Open

Keywords: African swine fever; African swine fever virus; virulence-associated gene; pathogenesis; immunoevasion; antiviral strategy; vaccine

(This special issue belongs to the Section Veterinary Microbiology)

Neonatal Bacterial Infections

edited by

Elva Bonifácio Andrade

submission deadline 30 Apr 2026 | Viewed by 34 | Submission Open

Keywords: bacterial pathogenesis; host– pathogen interactions; neonatal immune system; prevention strategies; diagnosis; models of infection; evasion of host immunity

(This special issue belongs to the Section Molecular Microbiology and Immunology)

Displaying special issue 351-400 on page 8 of 12.

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