Proteomes | Invitation to Read the Top 20 Cited Papers in 2023

1. “Multi-Omics Integration for the Design of Novel Therapies and the Identification of Novel Biomarkers”
by Tonci Ivanisevic and Raj N. Sewduth
Proteomes 2023, 11(4), 34; https://doi.org/10.3390/proteomes11040034
Available online: https://www.mdpi.com/2227-7382/11/4/34

2. “Algorithmically Reconstructed Molecular Pathways as the New Generation of Prognostic Molecular Biomarkers in Human Solid Cancers”
by Marianna Zolotovskaia, Maks Kovalenko, Polina Pugacheva, Victor Tkachev, Alexander Simonov, Maxim Sorokin, Alexander Seryakov, Andrew Garazha, Nurshat Gaifullin, Marina Sekacheva et al.
Proteomes 2023, 11(3), 26; https://doi.org/10.3390/proteomes11030026
Available online: https://www.mdpi.com/2227-7382/11/3/26

3. “The Need for Biomarkers in the ALS–FTD Spectrum: A Clinical Point of View on the Role of Proteomics”
by Francesca Vignaroli, Angelica Mele, Giacomo Tondo, Veronica De Giorgis, Marcello Manfredi, Cristoforo Comi, Letizia Mazzini and Fabiola De Marchi
Proteomes 2023, 11(1), 1; https://doi.org/10.3390/proteomes11010001
Available online: https://www.mdpi.com/2227-7382/11/1/1

4. “Proteomics-Based Identification of Dysregulated Proteins and Biomarker Discovery in Invasive Ductal Carcinoma, the Most Common Breast Cancer Subtype”
by Anca-Narcisa Neagu, Danielle Whitham, Logan Seymour, Norman Haaker, Isabella Pelkey and Costel C. Darie
Proteomes 2023, 11(2), 13; https://doi.org/10.3390/proteomes11020013
Available online: https://www.mdpi.com/2227-7382/11/2/13

5. “Comparison of Four Purification Methods on Serum Extracellular Vesicle Recovery, Size Distribution, and Proteomics”
by Dianny Elizabeth Jimenez, Muhammad Tahir, Muhammad Faheem, Wellington Bruno dos Santos Alves, Barbara de Lucena Correa, Gabriel Rocha de Andrade, Martin R. Larsen, Getulio Pereira de Oliveira, Jr. and Rinaldo Wellerson Pereira
Proteomes 2023, 11(3), 23; https://doi.org/10.3390/proteomes11030023
Available online: https://www.mdpi.com/2227-7382/11/3/23

6. “Anti-Cancer Properties of Flaxseed Proteome”
by Yulia Merkher, Elizaveta Kontareva, Anastasia Alexandrova, Rajesha Javaraiah, Margarita Pustovalova and Sergey Leonov
Proteomes 2023, 11(4), 37; https://doi.org/10.3390/proteomes11040037
Available online: https://www.mdpi.com/2227-7382/11/4/37

7. “Advancements in Oncoproteomics Technologies: Treading toward Translation into Clinical Practice”
by Ankita Punetha and Deepak Kotiya
Proteomes 2023, 11(1), 2; https://doi.org/10.3390/proteomes11010002
Available online: https://www.mdpi.com/2227-7382/11/1/2

8. “Post-Translational Modifications in Histones and Their Role in Abiotic Stress Tolerance in Plants”
by Madhvi Sharma, Amanpreet K. Sidhu, Mahesh Kumar Samota, Mamta Gupta, Pushpendra Koli and Mukesh Choudhary
Proteomes 2023, 11(4), 38; https://doi.org/10.3390/proteomes11040038
Available online: https://www.mdpi.com/2227-7382/11/4/38

9. “Characterisation of Colorectal Cancer Cell Lines through Proteomic Profiling of Their Extracellular Vesicles”
by Kathleen A. Heck, Håvard T. Lindholm, Barbara Niederdorfer, Eirini Tsirvouli, Martin Kuiper, Åsmund Flobak, Astrid Lægreid and Liv Thommesen
Proteomes 2023, 11(1), 3; https://doi.org/10.3390/proteomes11010003
Available online: https://www.mdpi.com/2227-7382/11/1/3

10. “Deep Learning in Phosphoproteomics: Methods and Application in Cancer Drug Discovery”
by Neha Varshney and Abhinava K. Mishra
Proteomes 2023, 11(2), 16; https://doi.org/10.3390/proteomes11020016
Available online: https://www.mdpi.com/2227-7382/11/2/16

11. “Spatial Proteomics for the Molecular Characterization of Breast Cancer”
by Klára Brožová, Brigitte Hantusch, Lukas Kenner and Klaus Kratochwill
Proteomes 2023, 11(2), 17; https://doi.org/10.3390/proteomes11020017
Available online: https://www.mdpi.com/2227-7382/11/2/17

12. “Proteomics-Driven Biomarkers in Pancreatic Cancer”
by Luís Ramalhete, Emanuel Vigia, Rúben Araújo and Hugo Pinto Marques
Proteomes 2023, 11(3), 24; https://doi.org/10.3390/proteomes11030024
Available online: https://www.mdpi.com/2227-7382/11/3/24

13. “Benefits of FAIMS to Improve the Proteome Coverage of Deteriorated and/or Cross-Linked TMT 10-Plex FFPE Tissue and Plasma-Derived Exosomes Samples”
by Ana Montero-Calle, María Garranzo-Asensio, Raquel Rejas-González, Jaime Feliu,
Marta Mendiola, Alberto Peláez-García and Rodrigo Barderas
Proteomes 2023, 11(4), 35; https://doi.org/10.3390/proteomes11040035
Available online: https://www.mdpi.com/2227-7382/11/4/35

14. “Unveiling the Molecular Footprint: Proteome-Based Biomarkers for Alzheimer’s Disease”
by Mukul Jain, Rupal Dhariwal, Nil Patil, Sandhya Ojha, Reshma Tendulkar, Mugdha Tendulkar, Parmdeep Singh Dhanda, Alpa Yadav and Prashant Kaushik
Proteomes 2023, 11(4), 33; https://doi.org/10.3390/proteomes11040033
Available online: https://www.mdpi.com/2227-7382/11/4/33

15. “Comparison of the Proteomes and Phosphoproteomes of S. cerevisiae Cells Harvested with Different Strategies”
by Valentina Rossio and Joao A. Paulo
Proteomes 2023, 11(4), 28; https://doi.org/10.3390/proteomes11040028
Available online: https://www.mdpi.com/2227-7382/11/4/28

16. “Analysis of the Interactome of the Toxoplasma gondii Tgj1 HSP40 Chaperone”
by Jonathan Munera López, Andrés Mariano Alonso, Maria Julia Figueras, Ana María Saldarriaga Cartagena, Miryam A. Hortua Triana, Luis Diambra, Laura Vanagas, Bin Deng, Silvia N. J. Moreno and Sergio Oscar Angel
Proteomes 2023, 11(1), 9; https://doi.org/10.3390/proteomes11010009
Available online: https://www.mdpi.com/2227-7382/11/1/9

17. “Optimized Proteome Reduction for Integrative Top–Down Proteomics”
by Breyer Woodland, Aleksandar Necakov and Jens R. Coorssen
Proteomes 2023, 11(1), 10; https://doi.org/10.3390/proteomes11010010
Available online: https://www.mdpi.com/2227-7382/11/1/10

18. “Changes in the Saliva Proteome of Pigs with Diarrhoea Caused by Escherichia coli”
by Miguel Rodrigues, Maria José López-Martinez, Alba Ortin-Bustillo, Jose Joaquin Cerón,
Silvia Martinez-Subiela, Alberto Muñoz-Prieto and Elsa Lamy
Proteomes 2023, 11(2), 14; https://doi.org/10.3390/proteomes11020014
Available online: https://www.mdpi.com/2227-7382/11/2/14

19. “Proteomic Research of Extracellular Vesicles in Clinical Biofluid”
by Shipan Fan and Ansgar Poetsch
Proteomes 2023, 11(2), 18; https://doi.org/10.3390/proteomes11020018
Available online: https://www.mdpi.com/2227-7382/11/2/18

20. “Comparative Proteomic Analysis of Two Commonly Used Laboratory Yeast Strains: W303 and BY4742”
by Valentina Rossio, Xinyue Liu and Joao A. Paulo
Proteomes 2023, 11(4), 30; https://doi.org/10.3390/proteomes11040030
Available online: https://www.mdpi.com/2227-7382/11/4/30