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Non-Coding RNA, Volume 10, Issue 4

2024 August - 9 articles

Cover Story: We have developed a novel amplification-free analytical platform to detect and quantify microRNA cancer biomarkers at concentration levels found in liquid biopsies and at approximately +/−20% accuracy across all concentrations. This platform uses total RNA isolated from the biospecimen as the microRNA source and the MinION nanopore device from Oxford Nanopore Technologies (ONT) for sensing. Detection and quantification of the target microRNA are enabled by a complementary oligo probe enhanced with osmium tags. Copies of microRNA cancer biomarkers show approximate 1.8-fold overexpression, with no data overlap between healthy and cancer samples. Once microRNA copies are normalized to the same total RNA content, they appear independent of the biospecimen, suggesting that urine may replace blood withdrawal. View this paper
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Articles (9)

  • Review
  • Open Access
6 Citations
4,776 Views
13 Pages

Gene regulation is crucial for cellular function and homeostasis. It involves diverse mechanisms controlling the production of specific gene products and contributing to tissue-specific variations in gene expression. The dysregulation of genes leads...

(This article belongs to the Section Computational Biology)
  • Review
  • Open Access
7 Citations
4,091 Views
19 Pages

Liver fibrosis is a significant contributor to liver-related disease mortality on a global scale. Despite this, there remains a dearth of effective therapeutic interventions capable of reversing this condition. Consequently, it is imperative that we...

(This article belongs to the Collection Feature Papers in Non-Coding RNA)
  • Viewpoint
  • Open Access
14 Citations
5,393 Views
23 Pages

Challenges in LncRNA Biology: Views and Opinions

  • Donald A. Adjeroh,
  • Xiaobo Zhou,
  • Alexandre Rossi Paschoal,
  • Nadya Dimitrova,
  • Ekaterina G. Derevyanchuk,
  • Tatiana P. Shkurat,
  • Jeffrey A. Loeb,
  • Ivan Martinez and
  • Leonard Lipovich

This is a mini-review capturing the views and opinions of selected participants at the 2021 IEEE BIBM 3rd Annual LncRNA Workshop, held in Dubai, UAE. The views and opinions are expressed on five broad themes related to problems in lncRNA, namely, cha...

(This article belongs to the Special Issue Selected Papers from IEEE BIBM 2021 Workshop on Long Non-coding RNAs: Mechanism, Function, and Computational Analysis (BIBM-LncRNA))
  • Article
  • Open Access
10 Citations
4,790 Views
21 Pages

High Sensitivity and Specificity Platform to Validate MicroRNA Biomarkers in Cancer and Human Diseases

  • Anastassia Kanavarioti,
  • M. Hassaan Rehman,
  • Salma Qureshi,
  • Aleena Rafiq and
  • Madiha Sultan

We developed a technology for detecting and quantifying trace nucleic acids using a bracketing protocol designed to yield a copy number with approximately ± 20% accuracy across all concentrations. The microRNAs (miRNAs) let-7b, miR-15b, miR-21...

(This article belongs to the Special Issue Non-coding RNA as Biomarker in Cancer)
  • Article
  • Open Access
12 Citations
3,430 Views
17 Pages

Exploring Differentially Expressed Sperm miRNAs in Idiopathic Recurrent Pregnancy Loss and Their Association with Early Embryonic Development

  • Ayushi Thapliyal,
  • Anil Kumar Tomar,
  • Sarla Naglot,
  • Soniya Dhiman,
  • Sudip Kumar Datta,
  • Jai Bhagwan Sharma,
  • Neeta Singh and
  • Savita Yadav

The high incidence of idiopathic recurrent pregnancy loss (iRPL) may stem from the limited research on male contributory factors. Many studies suggest that sperm DNA fragmentation and oxidative stress contribute to iRPL, but their roles are still deb...

(This article belongs to the Section Small Non-Coding RNA)
  • Communication
  • Open Access
3 Citations
3,761 Views
16 Pages

Differential Expression of lncRNAs in HIV Patients with TB and HIV-TB with Anti-Retroviral Treatment

  • Victoria A. Reid,
  • Enrique I. Ramos,
  • Raja Veerapandian,
  • Areanna Carmona,
  • Shrikanth S. Gadad and
  • Subramanian Dhandayuthapani

Tuberculosis (TB) is the leading cause of death among people with HIV-1 infection. To improve the diagnosis and treatment of HIV-TB patients, it is important to understand the mechanisms underlying these conditions. Here, we used an integrated genomi...

(This article belongs to the Section Long Non-Coding RNA)
  • Article
  • Open Access
3,340 Views
19 Pages

Expression of Transposable Elements throughout the Fasciola hepatica Trematode Life Cycle

  • Elizaveta K. Skalon,
  • Nick V. Panyushev,
  • Olga I. Podgornaya,
  • Anastasia R. Smolyaninova and
  • Anna I. Solovyeva

Background: Transposable elements (TEs) are major components of eukaryotic genomes. The extensive body of evidence suggests that although they were once considered “genomic parasites”, transposons and their transcripts perform specific fu...

(This article belongs to the Section Long Non-Coding RNA)
  • Article
  • Open Access
1 Citations
4,347 Views
22 Pages

Paratuberculosis or Johne’s disease (JD), a chronic granulomatous gastroenteritis caused by Mycobacterium avium subsp. paratuberculosis (MAP), causes huge economic losses and reduces animal welfare in dairy cattle herds worldwide. At present, m...

(This article belongs to the Section Detection and Biomarkers of Non-Coding RNA)
  • Editorial
  • Open Access
3 Citations
3,412 Views
4 Pages

Noncoding RNAs (ncRNAs), which include small nuclear RNAs (snRNAs), small nucleolar RNAs (snoRNAs), microRNAs (miRNAs), long noncoding RNAs (lncRNAs), and circular RNAs (circRNAs), are RNA molecules that arise from genomic regions without protein-cod...

(This article belongs to the Special Issue Molecular Mechanisms and Clinical Implications of Non-coding RNAs in Cancer)
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Non-Coding RNA - ISSN 2311-553X