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Biomolecules, Volume 10, Issue 9

September 2020 - 153 articles

Cover Story: Human transcription factors regulate the expression of target genes through their transactivation domains (TADs). As a first step, TADs interact with coactivators that are part of the general transcriptional machinery. MED25, a subunit of the mediator complex, is a coactivator that binds TADs through a cleft on its surface. Since most TADs adopt a rod-like, -helical structure, it is likely that TADs bind only in two main orientations (‘cis’ and ‘trans’) and cannot readily switch between these once bound. TADs, therefore, need to be able to bind bidirectionally. Here, Jeffery and Weinzierl show through computational simulations that human (ETV5) and viral (VP16) TADs can bind in both directions by employing alternative sets of residues to stabilize binding to the coactivator surface. View this paper
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Articles (153)

  • Review
  • Open Access
22 Citations
5,304 Views
16 Pages

Emerging Roles for the INK4a/ARF (CDKN2A) Locus in Adipose Tissue: Implications for Obesity and Type 2 Diabetes

  • Yasmina Kahoul,
  • Frédérik Oger,
  • Jessica Montaigne,
  • Philippe Froguel,
  • Christophe Breton and
  • Jean-Sébastien Annicotte

22 September 2020

Besides its role as a cell cycle and proliferation regulator, the INK4a/ARF (CDKN2A) locus and its associated pathways are thought to play additional functions in the control of energy homeostasis. Genome-wide association studies in humans and rodent...

  • Review
  • Open Access
56 Citations
7,795 Views
13 Pages

Arsenic Methyltransferase and Methylation of Inorganic Arsenic

  • Nirmal K. Roy,
  • Anthony Murphy and
  • Max Costa

22 September 2020

Arsenic occurs naturally in the environment, and exists predominantly as inorganic arsenite (As (III) and arsenate As (V)). Arsenic contamination of drinking water has long been recognized as a major global health concern. Arsenic exposure causes cha...

  • Review
  • Open Access
13 Citations
9,833 Views
24 Pages

22 September 2020

Inborn errors of metabolism cause abnormal synthesis, recycling, or breakdown of amino acids, neurotransmitters, and other various metabolites. This aberrant homeostasis commonly causes the accumulation of toxic compounds or depletion of vital metabo...

  • Article
  • Open Access
26 Citations
5,120 Views
43 Pages

MiRNA Profiles of Extracellular Vesicles Secreted by Mesenchymal Stromal Cells—Can They Predict Potential Off-Target Effects?

  • Timo Z. Nazari-Shafti,
  • Sebastian Neuber,
  • Ana G. Duran,
  • Vasileios Exarchos,
  • Christien M. Beez,
  • Heike Meyborg,
  • Katrin Krüger,
  • Petra Wolint,
  • Johanna Buschmann and
  • Roland Böni
  • + 3 authors

22 September 2020

The cardioprotective properties of extracellular vesicles (EVs) derived from mesenchymal stromal cells (MSCs) are currently being investigated in preclinical studies. Although microRNAs (miRNAs) encapsulated in EVs have been identified as one compone...

  • Communication
  • Open Access
8 Citations
4,037 Views
15 Pages

Identification of a Proanthocyanidin from Litchi Chinensis Sonn. Root with Anti-Tyrosinase and Antioxidant Activity

  • Matthew Saive,
  • Manon Genva,
  • Thibaut Istasse,
  • Michel Frederich,
  • Chloé Maes and
  • Marie-Laure Fauconnier

21 September 2020

This work follows an ethnobotanical study that took place in the island of Mayotte (France), which pointed out the potential properties of Litchi chinensis Sonn. roots when used to enhance skin health and appearance. Through in vitro testing of a cru...

  • Feature Paper
  • Review
  • Open Access
35 Citations
5,897 Views
23 Pages

21 September 2020

In the general population, the ability of high-density lipoproteins (HDLs) to promote cholesterol efflux is a predictor of cardiovascular events, independently of HDL cholesterol levels. Although patients with chronic kidney disease (CKD) have a high...

  • Article
  • Open Access
37 Citations
6,267 Views
23 Pages

G-Quadruplexes in the Archaea Domain

  • Václav Brázda,
  • Yu Luo,
  • Martin Bartas,
  • Patrik Kaura,
  • Otilia Porubiaková,
  • Jiří Šťastný,
  • Petr Pečinka,
  • Daniela Verga,
  • Violette Da Cunha and
  • Tomio S. Takahashi
  • + 4 authors

21 September 2020

The importance of unusual DNA structures in the regulation of basic cellular processes is an emerging field of research. Amongst local non-B DNA structures, G-quadruplexes (G4s) have gained in popularity during the last decade, and their presence and...

  • Article
  • Open Access
10 Citations
5,855 Views
26 Pages

21 September 2020

We report the results of our in silico study of approved drugs as potential treatments for COVID-19. The study is based on the analysis of normal modes of proteins. The drugs studied include chloroquine, ivermectin, remdesivir, sofosbuvir, boceprevir...

  • Article
  • Open Access
5 Citations
4,031 Views
14 Pages

Lipophilic Cations Rescue the Growth of Yeast under the Conditions of Glycolysis Overflow

  • Svyatoslav S. Sokolov,
  • Ekaterina A. Smirnova,
  • Olga V. Markova,
  • Natalya A. Kireeva,
  • Roman S. Kirsanov,
  • Liudmila S. Khailova,
  • Dmitry A. Knorre and
  • Fedor F. Severin

20 September 2020

Chemicals inducing a mild decrease in the ATP/ADP ratio are considered as caloric restriction mimetics as well as treatments against obesity. Screening for such chemicals in animal model systems requires a lot of time and labor. Here, we present a sy...

  • Article
  • Open Access
16 Citations
6,045 Views
22 Pages

Triapine Derivatives Act as Copper Delivery Vehicles to Induce Deadly Metal Overload in Cancer Cells

  • Kateryna Ohui,
  • Iryna Stepanenko,
  • Iuliana Besleaga,
  • Maria V. Babak,
  • Radu Stafi,
  • Denisa Darvasiova,
  • Gerald Giester,
  • Vivien Pósa,
  • Eva A. Enyedy and
  • Daniel Vegh
  • + 4 authors

19 September 2020

Thiosemicarbazones continue to attract the interest of researchers as potential anticancer drugs. For example, 3-aminopyridine-2-carboxaldehyde thiosemicarbazone, or triapine, is the most well-known representative of this class of compounds that has...

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Biomolecules - ISSN 2218-273X