Skip to Content

Biomolecules, Volume 10, Issue 9

2020 September - 153 articles

Cover Story: Human transcription factors regulate the expression of target genes through their transactivation domains (TADs). As a first step, TADs interact with coactivators that are part of the general transcriptional machinery. MED25, a subunit of the mediator complex, is a coactivator that binds TADs through a cleft on its surface. Since most TADs adopt a rod-like, -helical structure, it is likely that TADs bind only in two main orientations (‘cis’ and ‘trans’) and cannot readily switch between these once bound. TADs, therefore, need to be able to bind bidirectionally. Here, Jeffery and Weinzierl show through computational simulations that human (ETV5) and viral (VP16) TADs can bind in both directions by employing alternative sets of residues to stabilize binding to the coactivator surface. View this paper
  • Issues are regarded as officially published after their release is announced to the table of contents alert mailing list .
  • You may sign up for email alerts to receive table of contents of newly released issues.
  • PDF is the official format for papers published in both, html and pdf forms. To view the papers in pdf format, click on the "PDF Full-text" link, and use the free Adobe Reader to open them.

Articles (153)

  • Review
  • Open Access
26 Citations
6,162 Views
16 Pages

Emerging Roles for the INK4a/ARF (CDKN2A) Locus in Adipose Tissue: Implications for Obesity and Type 2 Diabetes

  • Yasmina Kahoul,
  • Frédérik Oger,
  • Jessica Montaigne,
  • Philippe Froguel and ,
  • Christophe Breton and
  • Jean-Sébastien Annicotte
  • + 1 author+ 0 author

22 September 2020

Besides its role as a cell cycle and proliferation regulator, the INK4a/ARF (CDKN2A) locus and its associated pathways are thought to play additional functions in the control of energy homeostasis. Genome-wide association studies in humans and rodent...

(This article belongs to the Special Issue Deciphering alternative functions of the INK4a/ARF locus)
  • Review
  • Open Access
71 Citations
9,048 Views
13 Pages

Arsenic Methyltransferase and Methylation of Inorganic Arsenic

  • Nirmal K. Roy,
  • Anthony Murphy and
  • Max Costa

22 September 2020

Arsenic occurs naturally in the environment, and exists predominantly as inorganic arsenite (As (III) and arsenate As (V)). Arsenic contamination of drinking water has long been recognized as a major global health concern. Arsenic exposure causes cha...

  • Review
  • Open Access
15 Citations
11,025 Views
24 Pages

22 September 2020

Inborn errors of metabolism cause abnormal synthesis, recycling, or breakdown of amino acids, neurotransmitters, and other various metabolites. This aberrant homeostasis commonly causes the accumulation of toxic compounds or depletion of vital metabo...

(This article belongs to the Special Issue Zebrafish: A Model for the Study of Human Diseases)
  • Article
  • Open Access
32 Citations
6,114 Views
43 Pages

MiRNA Profiles of Extracellular Vesicles Secreted by Mesenchymal Stromal Cells—Can They Predict Potential Off-Target Effects?

  • Timo Z. Nazari-Shafti,
  • Sebastian Neuber,
  • Ana G. Duran,
  • Vasileios Exarchos and ,
  • Christien M. Beez,
  • Heike Meyborg,
  • Katrin Krüger,
  • Petra Wolint,
  • Johanna Buschmann and
  • Maximilian Y. Emmert
  • + 8 authors+ 3 authors

22 September 2020

The cardioprotective properties of extracellular vesicles (EVs) derived from mesenchymal stromal cells (MSCs) are currently being investigated in preclinical studies. Although microRNAs (miRNAs) encapsulated in EVs have been identified as one compone...

(This article belongs to the Special Issue Cell-Free Approaches and Therapeutic Biomolecules for Cardiac Regeneration)
  • Article
  • Open Access
10 Citations
6,325 Views
26 Pages

21 September 2020

We report the results of our in silico study of approved drugs as potential treatments for COVID-19. The study is based on the analysis of normal modes of proteins. The drugs studied include chloroquine, ivermectin, remdesivir, sofosbuvir, boceprevir...

(This article belongs to the Section Bioinformatics and Systems Biology)
  • Communication
  • Open Access
9 Citations
4,597 Views
15 Pages

Identification of a Proanthocyanidin from Litchi Chinensis Sonn. Root with Anti-Tyrosinase and Antioxidant Activity

  • Matthew Saive,
  • Manon Genva,
  • Thibaut Istasse,
  • Michel Frederich and ,
  • Chloé Maes and
  • Marie-Laure Fauconnier
  • + 1 author+ 0 author

21 September 2020

This work follows an ethnobotanical study that took place in the island of Mayotte (France), which pointed out the potential properties of Litchi chinensis Sonn. roots when used to enhance skin health and appearance. Through in vitro testing of a cru...

  • Feature Paper
  • Review
  • Open Access
42 Citations
6,515 Views
23 Pages

21 September 2020

In the general population, the ability of high-density lipoproteins (HDLs) to promote cholesterol efflux is a predictor of cardiovascular events, independently of HDL cholesterol levels. Although patients with chronic kidney disease (CKD) have a high...

(This article belongs to the Special Issue High-Density Lipoprotein (HDL): The Role of Reverse Cholesterol Transport in Human Health and Disease)
  • Article
  • Open Access
42 Citations
7,040 Views
23 Pages

G-Quadruplexes in the Archaea Domain

  • Václav Brázda,
  • Yu Luo,
  • Martin Bartas,
  • Patrik Kaura and ,
  • Otilia Porubiaková,
  • Jiří Šťastný,
  • Petr Pečinka,
  • Daniela Verga,
  • Violette Da Cunha and
  • Jean-Louis Mergny
  • + 9 authors+ 4 authors

21 September 2020

The importance of unusual DNA structures in the regulation of basic cellular processes is an emerging field of research. Amongst local non-B DNA structures, G-quadruplexes (G4s) have gained in popularity during the last decade, and their presence and...

(This article belongs to the Collection Archaea: Diversity, Metabolism and Molecular Biology)
  • Article
  • Open Access
5 Citations
4,514 Views
14 Pages

Lipophilic Cations Rescue the Growth of Yeast under the Conditions of Glycolysis Overflow

  • Svyatoslav S. Sokolov,
  • Ekaterina A. Smirnova,
  • Olga V. Markova,
  • Natalya A. Kireeva and ,
  • Roman S. Kirsanov,
  • Liudmila S. Khailova,
  • Dmitry A. Knorre and
  • Fedor F. Severin
  • + 3 authors+ 0 author

20 September 2020

Chemicals inducing a mild decrease in the ATP/ADP ratio are considered as caloric restriction mimetics as well as treatments against obesity. Screening for such chemicals in animal model systems requires a lot of time and labor. Here, we present a sy...

(This article belongs to the Section Cellular Biochemistry)
  • Article
  • Open Access
17 Citations
6,751 Views
22 Pages

Triapine Derivatives Act as Copper Delivery Vehicles to Induce Deadly Metal Overload in Cancer Cells

  • Kateryna Ohui,
  • Iryna Stepanenko,
  • Iuliana Besleaga,
  • Maria V. Babak and ,
  • Radu Stafi,
  • Denisa Darvasiova,
  • Gerald Giester,
  • Vivien Pósa,
  • Eva A. Enyedy and
  • Vladimir B. Arion
  • + 9 authors+ 4 authors

19 September 2020

Thiosemicarbazones continue to attract the interest of researchers as potential anticancer drugs. For example, 3-aminopyridine-2-carboxaldehyde thiosemicarbazone, or triapine, is the most well-known representative of this class of compounds that has...

(This article belongs to the Section Molecular Biology)
  • Article
  • Open Access
14 Citations
5,956 Views
11 Pages

Cryo-EM Structure of Heterologous Protein Complex Loaded Thermotoga Maritima Encapsulin Capsid

  • Xiansong Xiong,
  • Chen Sun,
  • Frank S. Vago,
  • Thomas Klose and ,
  • Jiankang Zhu and
  • Wen Jiang
  • + 1 author+ 0 author

19 September 2020

Encapsulin is a class of nanocompartments that is unique in bacteria and archaea to confine enzymatic activities and sequester toxic reaction products. Here we present a 2.87 Å resolution cryo-EM structure of Thermotoga maritima encapsulin with heter...

  • Article
  • Open Access
6 Citations
3,200 Views
12 Pages

Molecular Topology for the Discovery of New Broad-Spectrum Antibacterial Drugs

  • Jose I. Bueso-Bordils,
  • Pedro A. Alemán-López,
  • Beatriz Suay-García,
  • Rafael Martín-Algarra and ,
  • Maria J. Duart,
  • Antonio Falcó and
  • Gerardo M. Antón-Fos
  • + 2 authors+ 0 author

19 September 2020

In this study, molecular topology was used to develop several discriminant equations capable of classifying compounds according to their antibacterial activity. Topological indices were used as structural descriptors and their relation to antibacteri...

(This article belongs to the Special Issue Big Data Analysis in Biomolecular Research, Bioinformatics, and Systems Biology with Complex Networks and Multi-Label Machine Learning Models)
  • Article
  • Open Access
21 Citations
6,558 Views
12 Pages

19 September 2020

It has been reported that 5-hydroxytryptamine (5-HT) is related to melanogenesis in mice and melanoma cells. However, the underlying mechanisms of 5-HT in regulating pigmentation remains unknown. In this study, we aim to clarify the regulatory mechan...

(This article belongs to the Section Molecular Biology)
  • Feature Paper
  • Article
  • Open Access
10 Citations
3,787 Views
14 Pages

The Cytokine IL-1β and Piperine Complex Surveyed by Experimental and Computational Molecular Biophysics

  • Gabriel Zazeri,
  • Ana Paula Ribeiro Povinelli,
  • Marcelo de Freitas Lima and
  • Marinônio Lopes Cornélio

18 September 2020

The bioactive piperine, a compound found in some pepper species, has been widely studied because of its therapeutic properties that include the inhibition of an important inflammation pathway triggered by interleukin-1 beta (IL-1β). However, inv...

(This article belongs to the Special Issue Enzymatic Inhibitors from Natural Sources: A Huge Collection of New Potential Drugs)
  • Feature Paper
  • Article
  • Open Access
17 Citations
5,765 Views
30 Pages

Production of Aromatic Compounds by Catalytic Depolymerization of Technical and Downstream Biorefinery Lignins

  • Alfonso Cornejo,
  • Fernando Bimbela,
  • Rui Moreira,
  • Karina Hablich and ,
  • Íñigo García-Yoldi,
  • Maitane Maisterra,
  • António Portugal,
  • Luis M. Gandía and
  • Víctor Martínez-Merino
  • + 4 authors+ 0 author

18 September 2020

Lignocellulosic materials are promising alternatives to non-renewable fossil sources when producing aromatic compounds. Lignins from Populus salicaceae. Pinus radiata and Pinus pinaster from industrial wastes and biorefinery effluents were isolated a...

(This article belongs to the Special Issue Biomolecules from Plant Residues)
  • Review
  • Open Access
107 Citations
23,445 Views
19 Pages

18 September 2020

Pompe disease, also known as glycogen storage disease type II, is caused by the lack or deficiency of a single enzyme, lysosomal acid alpha-glucosidase, leading to severe cardiac and skeletal muscle myopathy due to progressive accumulation of glycoge...

(This article belongs to the Special Issue Lysosomal Storage Disorders: Molecular Basis and Therapeutic Approaches)
  • Article
  • Open Access
32 Citations
8,822 Views
25 Pages

Evaluation of the Adverse Effects of Chronic Exposure to Donepezil (An Acetylcholinesterase Inhibitor) in Adult Zebrafish by Behavioral and Biochemical Assessments

  • Gilbert Audira,
  • Nguyen Thi Ngoc Anh,
  • Bui Thi Ngoc Hieu,
  • Nemi Malhotra and ,
  • Petrus Siregar,
  • Omar Villalobos,
  • Oliver B. Villaflores,
  • Tzong-Rong Ger,
  • Jong-Chin Huang and
  • Chung-Der Hsiao
  • + 6 authors+ 1 author

18 September 2020

Donepezil (DPZ) is an acetylcholinesterase inhibitor used for the clinical treatment of mild cognitive impairment. However, DPZ has been reported to have adverse effects, including causing abnormal cardiac rhythm, insomnia, vomiting, and muscle cramp...

(This article belongs to the Special Issue Cholinesterase Research)
  • Review
  • Open Access
31 Citations
10,322 Views
25 Pages

Metabolic Diversity and Therapeutic Potential of Holarrhena pubescens: An Important Ethnomedicinal Plant

  • Kulsoom Zahara,
  • Sujogya Kumar Panda,
  • Shasank Sekhar Swain and
  • Walter Luyten

18 September 2020

Holarrhena pubescens is an important medicinal plant of the Apocynaceae family that is widely distributed over the Indian subcontinent. The plant is extensively used in Ayurveda and other traditional medicinal systems without obvious adverse effects....

(This article belongs to the Collection Pharmacology of Medicinal Plants)
  • Article
  • Open Access
7 Citations
6,965 Views
10 Pages

Oxygen: The Rate-Limiting Factor for Episodic Memory Performance, Even in Healthy Young Individuals

  • Gil Suzin,
  • Tom Halpert Frolinger,
  • Dror Yogev,
  • Amir Hadanny and ,
  • Merav Catalogna,
  • Yuri Rassovsky and
  • Shai Efrati
  • + 2 authors+ 0 author

17 September 2020

Cognition is a crucial element of human functionality. Like any other physical capability, cognition is both enabled and limited by tissue biology. The aim of this study was to investigate whether oxygen is a rate-limiting factor for any of the main...

(This article belongs to the Special Issue Oxygen Therapy)
  • Feature Paper
  • Article
  • Open Access
21 Citations
4,887 Views
13 Pages

The Receptor Tyrosine Kinase TrkA Is Increased and Targetable in HER2-Positive Breast Cancer

  • Nathan Griffin,
  • Mark Marsland,
  • Severine Roselli,
  • Christopher Oldmeadow and ,
  • John Attia,
  • Marjorie M. Walker,
  • Hubert Hondermarck and
  • Sam Faulkner
  • + 3 authors+ 0 author

17 September 2020

The tyrosine kinase receptor A (NTRK1/TrkA) is increasingly regarded as a therapeutic target in oncology. In breast cancer, TrkA contributes to metastasis but the clinicopathological significance remains unclear. In this study, TrkA expression was as...

(This article belongs to the Special Issue Protein Phosphorylation in Cancer: Unraveling the Signaling Pathways)
  • Article
  • Open Access
6 Citations
4,445 Views
17 Pages

17 September 2020

Adenylyl cyclases (ACs) have a crucial role in many signal transduction pathways, in particular in the intricate control of cyclic AMP (cAMP) generation from adenosine triphosphate (ATP). Using homology models developed from existing structural data...

(This article belongs to the Section Molecular Structure and Dynamics)
  • Feature Paper
  • Review
  • Open Access
50 Citations
7,732 Views
20 Pages

Targeting Receptors on Cancer Cells with Protein Toxins

  • Antonella Antignani,
  • Eric Chun Hei Ho,
  • Maria Teresa Bilotta,
  • Rong Qiu and ,
  • Robert Sarnvosky and
  • David J. FitzGerald
  • + 1 author+ 0 author

17 September 2020

Cancer cells frequently upregulate surface receptors that promote growth and survival. These receptors constitute valid targets for intervention. One strategy involves the delivery of toxic payloads with the goal of killing those cancer cells with hi...

(This article belongs to the Special Issue Immunotoxins: From Design to Clinical Application)
  • Review
  • Open Access
16 Citations
6,077 Views
25 Pages

17 September 2020

Polymorphisms of group VIA calcium-independent phospholipase A2 (iPLA2β or PLA2G6) are positively associated with adiposity, blood lipids, and Type-2 diabetes. The ubiquitously expressed iPLA2β catalyzes the hydrolysis of phospholipids (PLs...

(This article belongs to the Special Issue Phospholipases: From Structure to Biological Function)
  • Review
  • Open Access
11 Citations
4,462 Views
25 Pages

Mulinane- and Azorellane-Type Diterpenoids: A Systematic Review of Their Biosynthesis, Chemistry, and Pharmacology

  • Angel de Jesús Dzul-Beh,
  • Andrés Humberto Uc-Cachón,
  • Jorge Bórquez,
  • Luis A. Loyola and ,
  • Luis Manuel Peña-Rodríguez and
  • Gloria María Molina-Salinas
  • + 1 author+ 0 author

17 September 2020

Mulinane- and azorellane-type diterpenoids have unique tricyclic fused five-, six-, and seven-membered systems and a wide range of biological properties, including antimicrobial, antiprotozoal, spermicidal, gastroprotective, and anti-inflammatory, am...

(This article belongs to the Section Chemical Biology)
  • Article
  • Open Access
11 Citations
6,510 Views
25 Pages

Automatic Quantification of Cardiomyocyte Dimensions and Connexin 43 Lateralization in Fluorescence Images

  • Antoni Oliver-Gelabert,
  • Laura García-Mendívil,
  • José María Vallejo-Gil,
  • Pedro Carlos Fresneda-Roldán and ,
  • Katarína Andelová,
  • Javier Fañanás-Mastral,
  • Manuel Vázquez-Sancho,
  • Marta Matamala-Adell,
  • Fernando Sorribas-Berjón and
  • Esther Pueyo
  • + 9 authors+ 4 authors

17 September 2020

Cardiomyocytes’ geometry and connexin 43 (CX43) amount and distribution are structural features that play a pivotal role in electrical conduction. Their quantitative assessment is of high interest in the study of arrhythmias, but it is usually...

(This article belongs to the Special Issue Connexins, Innexins, and Pannexins: From Biology to Clinical Targets)
  • Article
  • Open Access
21 Citations
4,383 Views
11 Pages

Natural Compounds Modulate Drug Transporter Mediated Oral Cancer Treatment

  • Hsiang Yang,
  • Yu-Ching Wei,
  • Wan-Chun Li,
  • Hsin-Yung Chen and ,
  • Hung-Ying Lin,
  • Chun-Pin Chiang and
  • Hsin-Ming Chen
  • + 2 authors+ 0 author

17 September 2020

Oral cancer (OC) is a serious health problem. Surgery is the best method to treat the disease but might reduce the quality of life of patients. Photodynamic therapy (PDT) may enhance quality of life but with some limitations. Therefore, the developme...

(This article belongs to the Special Issue Application and Mechanism of Natural Compounds in Dentistry)
  • Review
  • Open Access
72 Citations
8,034 Views
18 Pages

Inflammation in Obesity-Related Complications in Children: The Protective Effect of Diet and Its Potential Role as a Therapeutic Agent

  • Valeria Calcaterra,
  • Corrado Regalbuto,
  • Debora Porri,
  • Gloria Pelizzo and ,
  • Emanuela Mazzon,
  • Federica Vinci,
  • Gianvincenzo Zuccotti,
  • Valentina Fabiano and
  • Hellas Cena
  • + 4 authors+ 0 author

16 September 2020

Obesity is a growing health problem in both children and adults, impairing physical and mental state and impacting health care system costs in both developed and developing countries. It is well-known that individuals with excessive weight gain frequ...

(This article belongs to the Special Issue Therapeutic or Preventive Potential of Dietary Compounds in the Inflammatory Response)
  • Feature Paper
  • Article
  • Open Access
27 Citations
4,969 Views
26 Pages

Regulation of Poly(ADP-Ribose) Polymerase 1 Activity by Y-Box-Binding Protein 1

  • Konstantin N. Naumenko,
  • Mariya V. Sukhanova,
  • Loic Hamon,
  • Tatyana A. Kurgina and ,
  • Elizaveta E. Alemasova,
  • Mikhail M. Kutuzov,
  • David Pastré and
  • Olga I. Lavrik
  • + 3 authors+ 0 author

16 September 2020

Y-box-binding protein 1 (YB-1) is a multifunctional positively charged protein that interacts with DNA or RNA and poly(ADP-ribose) (PAR). YB-1 is poly(ADP-ribosyl)ated and stimulates poly(ADP-ribose) polymerase 1 (PARP1) activity. Here, we studied th...

(This article belongs to the Special Issue DNA Damage Response)
  • Article
  • Open Access
13 Citations
6,240 Views
17 Pages

Isolation of Cysteine-Rich Peptides from Citrullus colocynthis

  • Behzad Shahin-Kaleybar,
  • Ali Niazi,
  • Alireza Afsharifar,
  • Ghorbanali Nematzadeh and ,
  • Reza Yousefi,
  • Bernhard Retzl,
  • Roland Hellinger,
  • Edin Muratspahić and
  • Christian W. Gruber
  • + 4 authors+ 0 author

16 September 2020

The plant Citrullus colocynthis, a member of the squash (Cucurbitaceae) family, has a long history in traditional medicine. Based on the ancient knowledge about the healing properties of herbal preparations, plant-derived small molecules, e.g., salic...

(This article belongs to the Special Issue Enzymatic Inhibitors from Natural Sources: A Huge Collection of New Potential Drugs)
  • Review
  • Open Access
33 Citations
8,707 Views
35 Pages

Extracellular Vesicles as Nanotherapeutics for Parkinson’s Disease

  • Loredana Leggio,
  • Greta Paternò,
  • Silvia Vivarelli,
  • Francesca L’Episcopo and ,
  • Cataldo Tirolo,
  • Gabriele Raciti,
  • Fabrizio Pappalardo,
  • Carmela Giachino,
  • Salvatore Caniglia and
  • Nunzio Iraci
  • + 7 authors+ 2 authors

16 September 2020

Extracellular vesicles (EVs) are naturally occurring membranous structures secreted by normal and diseased cells, and carrying a wide range of bioactive molecules. In the central nervous system (CNS), EVs are important in both homeostasis and patholo...

(This article belongs to the Special Issue Potential Molecular Targets for Disease—Modifying Therapeutic Strategies in Parkinson’s Disease)
  • Article
  • Open Access
5 Citations
3,406 Views
19 Pages

Lighting Conditions Influence the Dynamics of Protease Synthesis and Proteasomal Activity in the White Rot Fungus Cerrena unicolor

  • Anna Pawlik,
  • Magdalena Jaszek,
  • Anita Swatek,
  • Marta Ruminowicz-Stefaniuk and ,
  • Beata Ciołek,
  • Andrzej Mazur and
  • Grzegorz Janusz
  • + 2 authors+ 0 author

15 September 2020

Recent transcriptomic and biochemical studies have revealed that light influences the global gene expression profile and metabolism of the white-rot fungus Cerrena unicolor. Here, we aimed to reveal the involvement of proteases and ubiquitin-mediated...

(This article belongs to the Section Cellular Biochemistry)
  • Article
  • Open Access
71 Citations
7,907 Views
14 Pages

Curcumin Inhibits the Primary Nucleation of Amyloid-Beta Peptide: A Molecular Dynamics Study

  • Irini Doytchinova,
  • Mariyana Atanasova,
  • Evdokiya Salamanova,
  • Stefan Ivanov and
  • Ivan Dimitrov

15 September 2020

The amyloid plaques are a key hallmark of neurodegenerative diseases such as Alzheimer’s disease and Parkinson’s disease. Amyloidogenesis is a complex long-lasting multiphase process starting with the formation of nuclei of amyloid peptid...

(This article belongs to the Collection Natural and Synthetic Compounds in Neurodegenerative Disorders)
  • Review
  • Open Access
98 Citations
9,322 Views
22 Pages

15 September 2020

Neurodegenerative disease refers to any pathological condition in which there is a progressive decline in neuronal function resulting from brain atrophy. Despite the immense efforts invested over recent decades in developing treatments for neurodegen...

(This article belongs to the Collection Mesenchymal Stem Cell Fate and Potential Therapy)
  • Review
  • Open Access
8 Citations
5,383 Views
19 Pages

Traditional Herbal Medicine Mediated Regulations during Head and Neck Carcinogenesis

  • Xiang-Yun Lan,
  • Tzu-Ting Chung,
  • Chien-Ling Huang,
  • Yi-Jang Lee and
  • Wan-Chun Li

15 September 2020

Head and neck squamous cell carcinoma (HNSCC) is one of the most prevalent neoplasms worldwide. It is well recognized that environmental challenges such as smoking, viral infection and alcohol consumption are key factors underlying HNSCC pathogenesis...

(This article belongs to the Special Issue Application and Mechanism of Natural Compounds in Dentistry)
  • Article
  • Open Access
36 Citations
7,363 Views
37 Pages

14 September 2020

This study was designed to assess the nephroprotective effects of Pleurotus ostreatus and Agaricus bisporus aqueous extracts and carvedilol on hyperoxaluria-induced urolithiasis and to scrutinize the possible roles of NF-κB, p53, Bcl-2, Bax and...

  • Article
  • Open Access
16 Citations
5,153 Views
14 Pages

Postoperative Administration of the Acetylcholinesterase Inhibitor, Donepezil, Interferes with Bone Healing and Implant Osseointegration in a Rat Model

  • Faez Saleh Al-Hamed,
  • Ola M. Maria,
  • Jeff Phan,
  • Ahmed Al Subaie and ,
  • Qiman Gao,
  • Alaa Mansour,
  • Lina Abu Nada,
  • Imane Boukhatem,
  • Osama A. Elkashty and
  • Faleh Tamimi
  • + 8 authors+ 3 authors

14 September 2020

Donepezil is an acetylcholinesterase inhibitor commonly used to treat mild to moderate Alzheimer’s disease. Its use has been associated with increased bone mass in humans and animals. However, the effect of postoperative administration of donepezil o...

(This article belongs to the Special Issue Cholinesterase Research)
  • Article
  • Open Access
5 Citations
4,961 Views
22 Pages

14 September 2020

A library of novel phosphonic acid analogues of homophenylalanine and phenylalanine, containing fluorine and bromine atoms in the phenyl ring, have been synthesized. Their inhibitory properties against two important alanine aminopeptidases, of human...

(This article belongs to the Special Issue Computational Approaches for the Discovery and Development of Pharmacologically Active Natural Products)
  • Review
  • Open Access
23 Citations
7,050 Views
31 Pages

Regulation of p27Kip1 and p57Kip2 Functions by Natural Polyphenols

  • Gian Luigi Russo,
  • Emanuela Stampone,
  • Carmen Cervellera and
  • Adriana Borriello

13 September 2020

In numerous instances, the fate of a single cell not only represents its peculiar outcome but also contributes to the overall status of an organism. In turn, the cell division cycle and its control strongly influence cell destiny, playing a critical...

  • Article
  • Open Access
8 Citations
3,731 Views
17 Pages

Structural Models for the Dynamic Effects of Loss-of-Function Variants in the Human SIM1 Protein Transcriptional Activation Domain

  • Mathew A. Coban,
  • Patrick R. Blackburn,
  • Murray L. Whitelaw,
  • Mieke M. van Haelst and ,
  • Paldeep S. Atwal and
  • Thomas R. Caulfield
  • + 1 author+ 0 author

12 September 2020

Single-minded homologue 1 (SIM1) is a transcription factor with numerous different physiological and developmental functions. SIM1 is a member of the class I basic helix-loop-helix-PER-ARNT-SIM (bHLH–PAS) transcription factor family, that inclu...

(This article belongs to the Section Molecular Structure and Dynamics)
  • Article
  • Open Access
30 Citations
4,839 Views
17 Pages

12 September 2020

Chitosan and tannic acid are known for their antibacterial properties. In the present in-situ study, their antibacterial and anti-adherent effects on biofilm formation on enamel were investigated. Six subjects carried upper jaw splints with bovine en...

(This article belongs to the Section Natural and Bio-derived Molecules)
  • Article
  • Open Access
8 Citations
3,434 Views
20 Pages

Transient Unfolding and Long-Range Interactions in Viral BCL2 M11 Enable Binding to the BECN1 BH3 Domain

  • Arvind Ramanathan,
  • Akash Parvatikar,
  • Srinivas C. Chennubhotla,
  • Yang Mei and
  • Sangita C. Sinha

11 September 2020

Viral BCL2 proteins (vBCL2s) help to sustain chronic infection of host proteins to inhibit apoptosis and autophagy. However, details of conformational changes in vBCL2s that enable binding to BH3Ds remain unknown. Using all-atom, multiple microsecond...

(This article belongs to the Special Issue Computational Perspectives on Intrinsic Disorder-Based Functionality)
  • Article
  • Open Access
11 Citations
4,060 Views
14 Pages

Effects of the Delta Opioid Receptor Agonist DADLE in a Novel Hypoxia-Reoxygenation Model on Human and Rat-Engineered Heart Tissue: A Pilot Study

  • Sandra Funcke,
  • Tessa R. Werner,
  • Marc Hein,
  • Bärbel M. Ulmer and ,
  • Arne Hansen,
  • Thomas Eschenhagen and
  • Marc N. Hirt
  • + 2 authors+ 0 author

11 September 2020

Intermittent hypoxia and various pharmacological compounds protect the heart from ischemia reperfusion injury in experimental approaches, but the translation into clinical trials has largely failed. One reason may lie in species differences and the l...

(This article belongs to the Section Molecular Medicine)
  • Review
  • Open Access
20 Citations
8,115 Views
32 Pages

Dynamic mRNP Remodeling in Response to Internal and External Stimuli

  • Kathi Zarnack,
  • Sureshkumar Balasubramanian,
  • Michael P. Gantier,
  • Vladislav Kunetsky and ,
  • Michael Kracht,
  • M. Lienhard Schmitz and
  • Katja Sträßer
  • + 2 authors+ 0 author

11 September 2020

Signal transduction and the regulation of gene expression are fundamental processes in every cell. RNA-binding proteins (RBPs) play a key role in the post-transcriptional modulation of gene expression in response to both internal and external stimuli...

(This article belongs to the Special Issue Ribonucleoprotein Particles (RNPs): From Structure to Function)
  • Article
  • Open Access
17 Citations
9,268 Views
28 Pages

Determining the Molecular Background of Endometrial Receptivity in Adenomyosis

  • Erika Prašnikar,
  • Tanja Kunej,
  • Katja Repnik,
  • Uroš Potočnik and ,
  • Jure Knez and
  • Borut Kovačič
  • + 1 author+ 0 author

11 September 2020

Background: Adenomyosis is a gynaecological condition with limited evidence of negative impact to endometrial receptivity. It is commonly associated with endometriosis, which has been shown to alter endometrial expression patterns. Therefore, the can...

(This article belongs to the Section Molecular Biology)
  • Editorial
  • Open Access
46 Citations
21,567 Views
33 Pages

11 September 2020

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is causing a pandemic of coronavirus disease 2019 (COVID-19). The worldwide transmission of COVID-19 from human to human is spreading like wildfire, affecting almost every country in the wo...

(This article belongs to the Section Molecular Medicine)
  • Article
  • Open Access
29 Citations
4,645 Views
22 Pages

A Phosphorylation-Induced Switch in the Nuclear Localization Sequence of the Intrinsically Disordered NUPR1 Hampers Binding to Importin

  • José L. Neira,
  • Bruno Rizzuti,
  • Ana Jiménez-Alesanco,
  • Martina Palomino-Schätzlein and ,
  • Olga Abián,
  • Adrián Velázquez-Campoy and
  • Juan L. Iovanna
  • + 2 authors+ 0 author

11 September 2020

Several carrier proteins are involved in protein transport from the cytoplasm to the nucleus in eukaryotic cells. One of those is importin α, of which there are several human isoforms; among them, importin α3 (Impα3) has a high flex...

(This article belongs to the Special Issue The Amazing World of IDPs in Human Diseases)
  • Review
  • Open Access
22 Citations
8,128 Views
20 Pages

10 September 2020

Many devastating neurodegenerative diseases are driven by the misfolding of normal proteins into a pathogenic abnormal conformation. Examples of such protein misfolding diseases include Alzheimer’s disease, Parkinson’s disease, Huntington’s disease,...

(This article belongs to the Special Issue Prion Diseases: A Model for Neurodegenerative Disorders)
  • Article
  • Open Access
21 Citations
5,029 Views
20 Pages

Effects of New NSAID-CAI Hybrid Compounds in Inflammation and Lung Fibrosis

  • Laura Lucarini,
  • Mariaconcetta Durante,
  • Silvia Sgambellone,
  • Cecilia Lanzi and ,
  • Elisabetta Bigagli,
  • Ozlem Akgul,
  • Emanuela Masini,
  • Claudiu T. Supuran and
  • Fabrizio Carta
  • + 4 authors+ 0 author

10 September 2020

Pulmonary fibrosis is a severe lung disease with progressive worsening of dyspnea, characterized by chronic inflammation and remodeling of lung parenchyma. Carbonic anhydrases are a family of zinc-metallo-enzymes that catalyze the reversible intercon...

  • Review
  • Open Access
29 Citations
9,847 Views
30 Pages

Mesenchymal Stem Cells as a Promising Cell Source for Integration in Novel In Vitro Models

  • Ann-Kristin Afflerbach,
  • Mark D. Kiri,
  • Tahir Detinis and
  • Ben M. Maoz

10 September 2020

The human-relevance of an in vitro model is dependent on two main factors—(i) an appropriate human cell source and (ii) a modeling platform that recapitulates human in vivo conditions. Recent years have brought substantial advancements in both...

(This article belongs to the Collection Mesenchymal Stem Cell Fate and Potential Therapy)
  • Article
  • Open Access
44 Citations
6,739 Views
18 Pages

Pharmacological Effects of Agastache rugosa against Gastritis Using a Network Pharmacology Approach

  • Hyeon-Hwa Nam,
  • Joong Sun Kim,
  • Jun Lee,
  • Young Hye Seo and ,
  • Hyo Seon Kim,
  • Seung Mok Ryu,
  • Goya Choi,
  • Byeong Cheol Moon and
  • A Yeong Lee
  • + 4 authors+ 0 author

9 September 2020

Agastache rugosa is used as a Korean traditional medicine to treat gastric diseases. However, the active ingredients and pharmacological targets of A. rugosa are unknown. In this study, we aimed to reveal the pharmacological effects of A. rugosa on g...

(This article belongs to the Section Cellular Biochemistry)

of 4

XFacebookLinkedIn
Biomolecules - ISSN 2218-273X