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International Journal of Molecular Sciences, Volume 20, Issue 9

2019 May-1 - 316 articles

Cover Story: Seed storage proteins must be hydrolyzed by proteases to facilitate the delivery of amino acids essential for embryo growth and development. This review focuses on the current implications of proteases in the germination of two cereal species, barley and wheat, for which the establishment of processes of proteolytic control during the germination process has considerable economic value. Emphasis is placed on recent attempts to increase our understanding the proteases involved in barley and wheat seed germination by means of novel genomic and proteomic technologies. View this paper
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Articles (316)

  • Article
  • Open Access
17 Citations
5,139 Views
16 Pages

Due to the inevitable presence of random defects, unpredictable grain boundaries in macroscopic samples, stress concentration at clamping points, and unknown load distribution in the investigation of graphene sheets, uncertainties are crucial and cha...

  • Article
  • Open Access
22 Citations
5,293 Views
24 Pages

Transcriptomic Analysis Reveals a Comprehensive Calcium- and Phytohormone-Dominated Signaling Response in Leymus chinensis Self-Incompatibility

  • Shuangyan Chen,
  • Junting Jia,
  • Liqin Cheng,
  • Pincang Zhao,
  • Dongmei Qi,
  • Weiguang Yang,
  • Hui Liu,
  • Xiaobing Dong,
  • Xiaoxia Li and
  • Gongshe Liu

Sheepgrass (Leymus chinensis (Trin.) Tzvel.) is an economically and ecologically important forage in the grass family. Self-incompatibility (SI) limits its seed production due to the low seed-setting rate after self-pollination. However, investigatio...

  • Review
  • Open Access
11 Citations
8,358 Views
11 Pages

Plasticity and Potency of Mammary Stem Cell Subsets During Mammary Gland Development

  • Eunmi Lee,
  • Raziye Piranlioglu,
  • Max S. Wicha and
  • Hasan Korkaya

It is now widely believed that mammary epithelial cell plasticity, an important physiological process during the stages of mammary gland development, is exploited by the malignant cells for their successful disease progression. Normal mammary epithel...

  • Review
  • Open Access
1,274 Citations
57,660 Views
23 Pages

Adipose Tissue Dysfunction as Determinant of Obesity-Associated Metabolic Complications

  • Michele Longo,
  • Federica Zatterale,
  • Jamal Naderi,
  • Luca Parrillo,
  • Pietro Formisano,
  • Gregory Alexander Raciti,
  • Francesco Beguinot and
  • Claudia Miele

Obesity is a critical risk factor for the development of type 2 diabetes (T2D), and its prevalence is rising worldwide. White adipose tissue (WAT) has a crucial role in regulating systemic energy homeostasis. Adipose tissue expands by a combination o...

  • Article
  • Open Access
13 Citations
5,247 Views
15 Pages

A Natural mtDNA Polymorphism in Complex III Is a Modifier of Healthspan in Mice

  • Misa Hirose,
  • Axel Künstner,
  • Paul Schilf,
  • Anna Katharina Tietjen,
  • Olaf Jöhren,
  • Patricia Huebbe,
  • Gerald Rimbach,
  • Jan Rupp,
  • Markus Schwaninger and
  • Saleh M. Ibrahim
  • + 1 author

In this study, we provide experimental evidence that a maternally inherited polymorphism in the mitochondrial cytochrome b gene (mt-Cytb; m.15124A>G, Ile-Val) in mitochondrial complex III resulted in middle-aged obesity and higher susceptibility t...

  • Article
  • Open Access
35 Citations
8,006 Views
27 Pages

Rice (Oryza sativa L.) is one of the most important food crops in the world. In plants, jasmonic acid (JA) plays essential roles in response to biotic and abiotic stresses. As one of the largest transcription factors (TFs), basic region/leucine zippe...

  • Article
  • Open Access
4 Citations
4,286 Views
11 Pages

Bombyx mori doublesex (Bmdsx) functions as a double-switch gene in the final step of the sex-determination cascade in the silkworm Bombyx mori. The P-element somatic inhibitor (PSI) protein in B. mori interacts with Bmdsx pre-mRNA in CE1 as an exonic...

  • Review
  • Open Access
7 Citations
4,005 Views
6 Pages

PD-L1 Expression in Mastocytosis

  • Margaret Williams,
  • Diane S. Lidke,
  • Karin Hartmann and
  • Tracy I. George

Programmed death 1 (PD-1), when activated by its ligands PD-L1 and PD-L2, suppresses active immune cells in normal immune regulation to limit autoimmunity and, in tumors, as a mechanism of immune evasion. PD-L1 expression has been described as both a...

  • Review
  • Open Access
24 Citations
8,162 Views
56 Pages

A Symphony of Signals: Intercellular and Intracellular Signaling Mechanisms Underlying Circadian Timekeeping in Mice and Flies

  • Sara Hegazi,
  • Christopher Lowden,
  • Julian Rios Garcia,
  • Arthur H. Cheng,
  • Karl Obrietan,
  • Joel D. Levine and
  • Hai-Ying Mary Cheng

The central pacemakers of circadian timekeeping systems are highly robust yet adaptable, providing the temporal coordination of rhythms in behavior and physiological processes in accordance with the demands imposed by environmental cycles. These feat...

  • Review
  • Open Access
16 Citations
7,137 Views
28 Pages

Calcium-binding proteins (CBPs) can influence and react to Ca2+ transients and modulate the activity of proteins involved in both maintaining homeostatic conditions and protecting cells in harsh environmental conditions. Hibernation is a strategy tha...

  • Article
  • Open Access
12 Citations
4,055 Views
9 Pages

Niemann-Pick Type A Disease: Behavior of Neutral Sphingomyelinase and Vitamin D Receptor

  • Carmela Conte,
  • Cataldo Arcuri,
  • Samuela Cataldi,
  • Carmen Mecca,
  • Michela Codini,
  • Maria Rachele Ceccarini,
  • Federica Filomena Patria,
  • Tommaso Beccari and
  • Elisabetta Albi

Sphingomyelinase (SMase) is responsible for the breakdown of sphingomyelin (SM) with production of ceramide. The absence of acid sphingomyelinase (aSMase) causes abnormal synapse formation in Niemann-Pick type A (NPA) disease. Because high levels of...

  • Review
  • Open Access
62 Citations
8,755 Views
21 Pages

Glycation of Plant Proteins: Regulatory Roles and Interplay with Sugar Signalling?

  • Julia Shumilina,
  • Alena Kusnetsova,
  • Alexander Tsarev,
  • Henry C. Janse van Rensburg,
  • Sergei Medvedev,
  • Vadim Demidchik,
  • Wim Van den Ende and
  • Andrej Frolov

Glycation can be defined as an array of non-enzymatic post-translational modifications of proteins formed by their interaction with reducing carbohydrates and carbonyl products of their degradation. Initial steps of this process rely on reducing suga...

  • Article
  • Open Access
12 Citations
4,489 Views
11 Pages

25-Hydroxyvitamin D Inhibits Hepatitis C Virus Production in Hepatocellular Carcinoma Cell Line by a Vitamin D Receptor-Independent Mechanism

  • Amiram Ravid,
  • Noa Rapaport,
  • Assaf Issachar,
  • Arie Erman,
  • Larisa Bachmetov,
  • Ran Tur-Kaspa and
  • Romy Zemel

Previously, we have reported that the active vitamin D metabolite, calcitriol and vitamin D3 (cholecalciferol), both remarkably inhibit hepatitis C virus production. The mechanism by which vitamin D3 exerts its effect is puzzling due to the low level...

  • Article
  • Open Access
27 Citations
6,502 Views
19 Pages

A Robust Model for Circadian Redox Oscillations

  • Marta del Olmo,
  • Achim Kramer and
  • Hanspeter Herzel

The circadian clock is an endogenous oscillator that controls daily rhythms in metabolism, physiology, and behavior. Although the timekeeping components differ among species, a common design principle is a transcription-translation negative feedback...

  • Article
  • Open Access
40 Citations
11,340 Views
18 Pages

Hepatoprotective Effect of Kombucha Tea in Rodent Model of Nonalcoholic Fatty Liver Disease/Nonalcoholic Steatohepatitis

  • Chanbin Lee,
  • Jieun Kim,
  • Sihyung Wang,
  • Sumi Sung,
  • Namgyu Kim,
  • Hyun-Hee Lee,
  • Young-Su Seo and
  • Youngmi Jung

Kombucha tea (KT) has emerged as a substance that protects the liver from damage; however, its mechanisms of action on the fatty liver remain unclear. Therefore, we investigated the potential role of KT and its underlying mechanisms on nonalcoholic f...

  • Article
  • Open Access
50 Citations
6,196 Views
18 Pages

Interaction of Mycotoxin Alternariol with Serum Albumin

  • Eszter Fliszár-Nyúl,
  • Beáta Lemli,
  • Sándor Kunsági-Máté,
  • Luca Dellafiora,
  • Chiara Dall’Asta,
  • Gabriele Cruciani,
  • Gábor Pethő and
  • Miklós Poór

Alternariol (AOH) is a mycotoxin produced by Alternaria species. In vitro studies suggest the genotoxic, mutagenic, and endocrine disruptor effects of AOH, and an increased incidence of esophageal cancer has been reported related to higher AOH exposu...

  • Review
  • Open Access
31 Citations
8,142 Views
16 Pages

Role of Cyclin-Dependent Kinase Inhibitors in Endometrial Cancer

  • Gaia Giannone,
  • Valentina Tuninetti,
  • Eleonora Ghisoni,
  • Sofia Genta,
  • Giulia Scotto,
  • Gloria Mittica and
  • Giorgio Valabrega

Endometrial Cancer (EC) is an important cause of death in women worldwide. Despite early diagnosis and optimal treatment of localized disease, relapsed patients have few therapeutic options because after first line therapy, currently no standard of c...

  • Article
  • Open Access
24 Citations
4,959 Views
14 Pages

Indole-Based Hydrazones Containing A Sulfonamide Moiety as Selective Inhibitors of Tumor-Associated Human Carbonic Anhydrase Isoforms IX and XII

  • Kübra Demir-Yazıcı,
  • Silvia Bua,
  • Nurgül Mutlu Akgüneş,
  • Atilla Akdemir,
  • Claudiu T. Supuran and
  • Özlen Güzel-Akdemir

Novel sulfonamidoindole-based hydrazones with a 2-(hydrazinocarbonyl)-3-phenyl-1H-indole-5-sulfonamide scaffold were synthesized and tested in enzyme inhibition assays against the tumor-associated carbonic anhydrase isoforms, hCA IX and XII, and the...

  • Editorial
  • Open Access
20 Citations
6,252 Views
5 Pages

Connecting West and East

  • Ming Zhang,
  • Mohamed Moalin and
  • Guido R.M.M. Haenen

Despite their similarities, Western medicine and Eastern medicine are very different because they are built on different fundamentals. The general idea has arisen that we will benefit by connecting Western and Eastern medicine. First, both the merits...

  • Review
  • Open Access
23 Citations
6,789 Views
17 Pages

Hsp70s use ATP to generate forces that disassemble protein complexes and aggregates, and that translocate proteins into organelles. Entropic pulling has been proposed as a novel mechanism, distinct from the more familiar power-stroke and Brownian rat...

  • Review
  • Open Access
38 Citations
7,526 Views
13 Pages

Some single-stranded positive-sense RNA [ssRNA(+)] viruses, including Flavivirus, generate specific organelle-like structures in the host endoplasmic reticulum (ER). These structures are called virus replication organelles and consist of two distinct...

  • Article
  • Open Access
29 Citations
4,695 Views
15 Pages

Fungal Exocellular (1-6)-β-d-glucan: Carboxymethylation, Characterization, and Antioxidant Activity

  • Thais Vanessa Theis,
  • Vidiany Aparecida Queiroz Santos,
  • Patrícia Appelt,
  • Aneli M. Barbosa-Dekker,
  • Vaclav Vetvicka,
  • Robert F. H. Dekker and
  • Mário A. A. Cunha

Exocellular (1→6)-β-d-glucan (lasiodiplodan) produced by the fungus Lasiodiplodia theobromae MMPI was derivatized by carboxymethylation using different concentrations of a derivatizing agent. Lasiodiplodan was derivatized by carboxymethylat...

  • Article
  • Open Access
20 Citations
6,884 Views
16 Pages

Identifying the Pathological Domain of Alpha- Synuclein as a Therapeutic for Parkinson’s Disease

  • Ning Shen,
  • Ge Song,
  • Haiqiang Yang,
  • Xiaoyang Lin,
  • Breanna Brown,
  • Yuzhu Hong,
  • Jianfeng Cai and
  • Chuanhai Cao

Alpha-synuclein is considered the major pathological protein associated with Parkinson’s disease, but there is still no effective immunotherapy which targets alpha-synuclein. In order to create a safer and more effective therapy against PD, we...

  • Article
  • Open Access
17 Citations
7,010 Views
16 Pages

ADP-ribosylation factor-guanine nucleotide exchange factors (ARF-GEFs) act as key regulators of vesicle trafficking in all eukaryotes. In Arabidopsis, there are eight ARF-GEFs, including three members of the GBF1 subfamily and five members of the BIG...

  • Review
  • Open Access
209 Citations
19,375 Views
16 Pages

Myc is a nuclear transcription factor that mainly regulates cell growth, cell cycle, metabolism, and survival. Myc family proteins contain c-Myc, n-Myc, and l-Myc. Among them, c-Myc can become a promising therapeutic target molecule in cancer. Cancer...

  • Article
  • Open Access
19 Citations
5,117 Views
15 Pages

Deep brain stimulation of the mesencephalic locomotor region (MLR) improves the motor symptoms in Parkinson’s disease and experimental stroke by intervening in the motor cerebral network. Whether high-frequency stimulation (HFS) of the MLR is i...

  • Review
  • Open Access
102 Citations
7,895 Views
13 Pages

Current Understanding of Autophagy in Pregnancy

  • Akitoshi Nakashima,
  • Sayaka Tsuda,
  • Tae Kusabiraki,
  • Aiko Aoki,
  • Akemi Ushijima,
  • Tomoko Shima,
  • Shi-Bin Cheng,
  • Surendra Sharma and
  • Shigeru Saito

Autophagy is an evolutionarily conserved process in eukaryotes to maintain cellular homeostasis under environmental stress. Intracellular control is exerted to produce energy or maintain intracellular protein quality controls. Autophagy plays an impo...

  • Article
  • Open Access
45 Citations
9,018 Views
21 Pages

Computational Aminoacyl-tRNA Synthetase Library Design for Photocaged Tyrosine

  • Tobias Baumann,
  • Matthias Hauf,
  • Florian Richter,
  • Suki Albers,
  • Andreas Möglich,
  • Zoya Ignatova and
  • Nediljko Budisa

Engineering aminoacyl-tRNA synthetases (aaRSs) provides access to the ribosomal incorporation of noncanonical amino acids via genetic code expansion. Conventional targeted mutagenesis libraries with 5–7 positions randomized cover only marginal...

  • Communication
  • Open Access
5 Citations
3,982 Views
9 Pages

To reveal the working pattern of programmed cell death, knowledge of the subcellular location of apoptosis proteins is essential. Besides the costly and time-consuming method of experimental determination, research into computational locating schemes...

  • Review
  • Open Access
78 Citations
13,339 Views
25 Pages

Divergent Approaches to Virulence in C. albicans and C. glabrata: Two Sides of the Same Coin

  • Mónica Galocha,
  • Pedro Pais,
  • Mafalda Cavalheiro,
  • Diana Pereira,
  • Romeu Viana and
  • Miguel C. Teixeira

Candida albicans and Candida glabrata are the two most prevalent etiologic agents of candidiasis worldwide. Although both are recognized as pathogenic, their choice of virulence traits is highly divergent. Indeed, it appears that these different appr...

  • Review
  • Open Access
36 Citations
8,257 Views
14 Pages

The Cross-Talk Between the TNF-α and RASSF-Hippo Signalling Pathways

  • Delvac Oceandy,
  • Bella Amanda,
  • Faisal Yusuf Ashari,
  • Zakiyatul Faizah,
  • M Aminudin Aziz and
  • Nicholas Stafford

The regulation of cell death through apoptosis is essential to a number of physiological processes. Defective apoptosis regulation is associated with many abnormalities including anomalies in organ development, altered immune response and the develop...

  • Review
  • Open Access
77 Citations
13,490 Views
23 Pages

The liver and its zonation contribute to whole body homeostasis. Acute and chronic, not always liver, diseases impair proper metabolic zonation. Various underlying pathways, such as β-catenin, hedgehog signaling, and the Hippo pathway, along wit...

  • Article
  • Open Access
5 Citations
4,908 Views
15 Pages

Genetic Variation for Seed Metabolite Levels in Brachypodium distachyon

  • Yoshihiko Onda,
  • Komaki Inoue,
  • Yuji Sawada,
  • Minami Shimizu,
  • Kotaro Takahagi,
  • Yukiko Uehara-Yamaguchi,
  • Masami Y. Hirai,
  • David F. Garvin and
  • Keiichi Mochida

Metabolite composition and concentrations in seed grains are important traits of cereals. To identify the variation in the seed metabolotypes of a model grass, namely Brachypodium distachyon, we applied a widely targeted metabolome analysis to forty...

  • Article
  • Open Access
21 Citations
4,382 Views
16 Pages

Self-Assembled Benznidazole-Loaded Cationic Nanoparticles Containing Cholesterol/Sialic Acid: Physicochemical Properties, In Vitro Drug Release and In Vitro Anticancer Efficacy

  • Alaine Maria dos Santos-Silva,
  • Lilia Basílio de Caland,
  • Ednaldo Gomes do Nascimento,
  • Ana Luiza C. de S.L. Oliveira,
  • Raimundo F. de Araújo-Júnior,
  • Alianda Maira Cornélio,
  • Matheus F. Fernandes-Pedrosa and
  • Arnóbio Antônio da Silva-Júnior

Cationic polymeric nanoparticles (NPs) have the ability to overcome biological membranes, leading to improved efficacy of anticancer drugs. The modulation of the particle-cell interaction is desired to control this effect and avoid toxicity to normal...

  • Article
  • Open Access
118 Citations
10,270 Views
17 Pages

An Integrated Analysis of the Rice Transcriptome and Metabolome Reveals Differential Regulation of Carbon and Nitrogen Metabolism in Response to Nitrogen Availability

  • Wei Xin,
  • Lina Zhang,
  • Wenzhong Zhang,
  • Jiping Gao,
  • Jun Yi,
  • Xiaoxi Zhen,
  • Ziang Li,
  • Ying Zhao,
  • Chengcheng Peng and
  • Chen Zhao

Nitrogen (N) is an extremely important macronutrient for plant growth and development. It is the main limiting factor in most agricultural production. However, it is well known that the nitrogen use efficiency (NUE) of rice gradually decreases with t...

  • Article
  • Open Access
13 Citations
4,168 Views
10 Pages

Oncogenic Effect of the Novel Fusion Gene VAPA-Rab31 in Lung Adenocarcinoma

  • Daseul Yoon,
  • Kieun Bae,
  • Jin-Hee Kim,
  • Yang-Kyu Choi and
  • Kyong-Ah Yoon

Fusion genes have been identified as oncogenes in several solid tumors including lung, colorectal, and stomach cancers. Here, we characterized the fusion gene, VAPA-Rab31, discovered from RNA-sequencing data of a patient with lung adenocarcinoma who...

  • Article
  • Open Access
14 Citations
4,113 Views
17 Pages

Petal color, size, and morphology play important roles in protecting other floral organs, attracting pollinators, and facilitating sexual reproduction in plants. In a previous study, we obtained a petal degeneration mutant (pdm) from the ‘FT&rs...

  • Article
  • Open Access
23 Citations
7,225 Views
10 Pages

Three quantitative structure-activity relationship (QSAR) models for predicting the affinity of mu-opioid receptor (OR) ligands have been developed. The resulted models, exploiting the accessibility of the QSAR modeling, generate a useful tool for th...

  • Article
  • Open Access
12 Citations
5,663 Views
15 Pages

3-Methylcholanthrene Induces Chylous Ascites in TCDD-Inducible Poly-ADP-Ribose Polymerase (Tiparp) Knockout Mice

  • Tiffany E. Cho,
  • Debbie Bott,
  • Shaimaa Ahmed,
  • David Hutin,
  • Alvin Gomez,
  • Laura Tamblyn,
  • Angela C. Zhou,
  • Tania H. Watts,
  • Denis M. Grant and
  • Jason Matthews

TCDD-inducible poly-ADP-ribose polymerase (TIPARP) is an aryl hydrocarbon receptor (AHR) target gene that functions as part of a negative feedback loop to repress AHR activity. Tiparp−/− mice exhibit increased sensitivity to the toxicolog...

  • Review
  • Open Access
212 Citations
20,071 Views
41 Pages

Natural Compounds for Alzheimer’s Disease Therapy: A Systematic Review of Preclinical and Clinical Studies

  • Stephanie Andrade,
  • Maria João Ramalho,
  • Joana Angélica Loureiro and
  • Maria do Carmo Pereira

Alzheimer’s Disease (AD) is a neurodegenerative disorder related with the increase of age and it is the main cause of dementia in the world. AD affects cognitive functions, such as memory, with an intensity that leads to several functional loss...

  • Article
  • Open Access
12 Citations
4,247 Views
15 Pages

Mesenchymal stem cells (MSCs) are optimal sources of autologous stem cells for cell-based therapy in chronic kidney disease (CKD). However, CKD-associated pathophysiological conditions, such as endoplasmic reticulum (ER) stress and oxidative stress,...

  • Article
  • Open Access
55 Citations
5,220 Views
13 Pages

Nanoparticles (NPs) are currently under intensive research for their application in tumor diagnosis and therapy. X-ray fluorescence computed tomography (XFCT) is considered a promising non-invasive imaging technique to obtain the bio-distribution of...

  • Article
  • Open Access
13 Citations
6,250 Views
17 Pages

Single-Cell RNA-Sequencing Identifies Activation of TP53 and STAT1 Pathways in Human T Lymphocyte Subpopulations in Response to Ex Vivo Radiation Exposure

  • Maria Moreno-Villanueva,
  • Ye Zhang,
  • Alan Feiveson,
  • Brandon Mistretta,
  • Yinghong Pan,
  • Sujash Chatterjee,
  • Winston Wu,
  • Ryan Clanton,
  • Mayra Nelman-Gonzalez and
  • Honglu Wu
  • + 3 authors

Detrimental health consequences from exposure to space radiation are a major concern for long-duration human exploration missions to the Moon or Mars. Cellular responses to radiation are expected to be heterogeneous for space radiation exposure, wher...

  • Article
  • Open Access
50 Citations
7,996 Views
14 Pages

The overactivation of microglia is known to trigger inflammatory reactions in the central nervous system, which ultimately induce neuroinflammatory disorders including Alzheimer’s disease. However, increasing evidence has shown that menaquinone...

  • Article
  • Open Access
18 Citations
6,472 Views
18 Pages

Liquid crystal displays (LCDs) are used as screens in consumer electronics and are indispensable in the modern era of computing. LCDs utilize light-emitting diodes (LEDs) as backlight modules and emit high levels of blue light, which may cause retina...

  • Article
  • Open Access
24 Citations
4,617 Views
10 Pages

Geranylgeraniol Suppresses the Expression of IRAK1 and TRAF6 to Inhibit NFκB Activation in Lipopolysaccharide-Induced Inflammatory Responses in Human Macrophage-Like Cells

  • Puspo E. Giriwono,
  • Hitoshi Shirakawa,
  • Yusuke Ohsaki,
  • Shoko Sato,
  • Yukihide Aoyama,
  • Hsin-Jung Ho,
  • Tomoko Goto and
  • Michio Komai

Geranylgeraniol (GGOH), a natural isoprenoid found in plants, has anti-inflammatory effects via inhibiting the activation of nuclear factor-kappa B (NFκB). However, its detailed mechanism has not yet been elucidated. Recent studies have reveale...

  • Article
  • Open Access
29 Citations
5,241 Views
19 Pages

Nogo-B Receptor Directs Mitochondria-Associated Membranes to Regulate Vascular Smooth Muscle Cell Proliferation

  • Yi-Dong Yang,
  • Man-Man Li,
  • Gang Xu,
  • Lan Feng,
  • Er-Long Zhang,
  • Jian Chen,
  • De-Wei Chen and
  • Yu-Qi Gao

Mitochondria-associated membranes (MAM) are a well-recognized contact link between the mitochondria and endoplasmic reticulum that affects mitochondrial biology and vascular smooth muscle cells (VSMCs) proliferation via the regulation of mitochondria...

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Int. J. Mol. Sci. - ISSN 1422-0067