Microbiota Dynamics in Environmental and Host Systems: From Ecology to Applications

A special issue of Microorganisms (ISSN 2076-2607). This special issue belongs to the section "Environmental Microbiology".

Deadline for manuscript submissions: 31 January 2026 | Viewed by 18

Special Issue Editors


E-Mail Website
Guest Editor
Department of Environmental Engineering, University of Patras, Agrinio, Greece
Interests: microbial ecology; genomics; metagenomics; endosymbionts
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
Department of Environmental Engineering, Faculty of Engineering, Democritus University of Thrace, Vas. Sofias 12, Xanthi 67100, Greece
Interests: membrane bioreactors; activated sludge microbiota; biofouling; fouling prevention; environmental microbiology
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
Laboratory of Biotechnology and Valorisation of Bio-GeoRessources, University of Manouba, Ariana 2020, Tunisia
Interests: microbiome; drug resistance; cancer

E-Mail Website
Guest Editor
Laboratoire de Biotechnologie et de Valorisation des Bio-Géo Ressources, Institut Supérieur de Biotechnologie, Université de la Manouba, Manouba, Tunisia
Interests: micobiolgy; molecular biology; genomics

Special Issue Information

Dear Colleagues,

This Special Issue will focus on the complex interactions between microorganisms and their environments, covering both natural ecosystems and host-associated microbiomes. We welcome original research articles, comprehensive reviews, and short communications that explore the following:

  • Environmental microbiome dynamics and community structure;
  • Host–microbe interactions across different organisms (plants, animals, humans);
  • Microbial ecology in extreme and changing environments;
  • Applications of microbiome research in biotechnology and medicine;
  • Novel methodological approaches in microbiome analysis;
  • Microbiome responses to environmental stressors and climate change.

This Special Issue aims to bridge the gap between fundamental microbial ecology research and practical applications, providing insights into how microbiota function across diverse systems.

Please proceed with creating the Special Issue website. We are ready to begin promoting it and inviting high-quality submissions.

Dr. George Tsiamis
Dr. Spyridon Ntougias
Dr. Soumaya Kouidhi
Dr. Mouna Mahjoubi
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Microorganisms is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • environment 
  • microbiome 
  • host–microbe interactions 
  • microbial ecology

Benefits of Publishing in a Special Issue

  • Ease of navigation: Grouping papers by topic helps scholars navigate broad scope journals more efficiently.
  • Greater discoverability: Special Issues support the reach and impact of scientific research. Articles in Special Issues are more discoverable and cited more frequently.
  • Expansion of research network: Special Issues facilitate connections among authors, fostering scientific collaborations.
  • External promotion: Articles in Special Issues are often promoted through the journal's social media, increasing their visibility.
  • Reprint: MDPI Books provides the opportunity to republish successful Special Issues in book format, both online and in print.

Further information on MDPI's Special Issue policies can be found here.

Published Papers

This special issue is now open for submission.
Back to TopTop