Microbiota Dynamics in Environmental and Host Systems: From Ecology to Applications

Dear Colleagues,

This Special Issue will focus on the complex interactions between microorganisms and their environments, covering both natural ecosystems and host-associated microbiomes. We welcome original research articles, comprehensive reviews, and short communications that explore the following:

• Environmental microbiome dynamics and community structure;
• Host–microbe interactions across different organisms (plants, animals, humans);
• Microbial ecology in extreme and changing environments;
• Applications of microbiome research in biotechnology and medicine;
• Novel methodological approaches in microbiome analysis;
• Microbiome responses to environmental stressors and climate change.

This Special Issue aims to bridge the gap between fundamental microbial ecology research and practical applications, providing insights into how microbiota function across diverse systems.

Please proceed with creating the Special Issue website. We are ready to begin promoting it and inviting high-quality submissions.

Dr. George Tsiamis
Dr. Spyridon Ntougias
Dr. Soumaya Kouidhi
Dr. Mouna Mahjoubi
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 250 words) can be sent to the Editorial Office for assessment.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Microorganisms is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.