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Fermentation publishes Special Issues to create collections of papers on specific topics, with the aim of building a community of authors and readers to discuss the latest research and develop new ideas and research directions. Special Issues are led by Guest Editors, who are experts on the topic and all Special Issue submissions follow MDPI's standard editorial process. The journal’s Editor-in-Chief and/or designated Editorial Board Member will oversee Guest Editor appointments and Special Issue proposals, checking their content for relevance and ensuring the suitability of the material for the journal. The papers published in a Special Issue will be collected and displayed on a dedicated page of the journal’s website. Further information on MDPI's Special Issue policies and Guest Editor responsibilities can be found here. For any inquiries related to a Special Issue, please contact the Editorial Office.

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Novel Strategies and Emerging Technologies in Functional and Sustainable Food Systems

edited by

Yiannis Kourkoutas

and

Gregoria Mitropoulou

submission deadline 15 Aug 2025 | 1 articles | Viewed by 810 | Submission Open

Keywords: starter cultures; fermented foods and beverages; functional ingredients; dairy products; probiotics; prebiotics; synbiotics; sustainable processes; microbiome applications; food security; circular economy; functional food regulations

(This special issue belongs to the Section Fermentation for Food and Beverages)

Bioprocesses for Biomass Valorization in Biorefineries

edited by

Thais S. Milessi

and

Andreza A. Longati

submission deadline 25 Aug 2025 | 5 articles | Viewed by 5026 | Submission Open

Keywords: biorefinery; biomass valorization; sustainability; integrated processes; life cycle assessment; bioprocess engineering; techno-economic assessment

(This special issue belongs to the Section Industrial Fermentation)

Current Trends in Bioprocesses for Waste Valorization

edited by

Octavio García-Depraect

, Laura Vargas-Estrada and

Roberto Castro-Muñoz

submission deadline 25 Aug 2025 | 4 articles | Viewed by 3932 | Submission Open

Keywords: waste valorization; algal biomass; microbial fermentation; membrane technology; anaerobic digestion; bioenergy; circular economy

(This special issue belongs to the Section Industrial Fermentation)

Scale-Up Challenges in Microbial Fermentation

edited by Tajalli Keshavarz

submission deadline 25 Aug 2025 | Viewed by 412 | Submission Open

Keywords: microbes; free-cell culture; immobilised-cell culture; bioreactor designs; modes of fermentation; scale-up; scale-down

(This special issue belongs to the Section Industrial Fermentation)

Applied Microorganisms and Industrial/Food Enzymes, 2nd Edition

edited by

Xian Zhang

submission deadline 30 Aug 2025 | 7 articles | Viewed by 6492 | Submission Open

Keywords: applied microorganisms; industrial/food enzymes; fermentation optimization; metabolic engineering; synthetic biology; protein engineering; transcriptional regulation; host cells; protein expression; high throughput screening

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

Lactic Acid Fermentation and the Colours of Biotechnology: 4th Edition

edited by

Łukasz Łopusiewicz

submission deadline 30 Aug 2025 | 4 articles | Viewed by 5037 | Submission Open

Keywords: starter cultures and protective cultures; functional biomolecules; biocontrol; food quality; fermentation; biotransformations; prebiotics and probiotics; vaccines; antimicrobial substances; bioplastic; biodiversity and bioremediation; animal nutrition

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

Computer and Mathematical Simulation of Microbial Fermentations: The Choice of Models, Parameter Estimation and Applications

edited by

Nicolai S. Panikov

submission deadline 30 Aug 2025 | Viewed by 566 | Submission Open

Keywords: computer and mathematical simulations; mathematical models; microbial fermentation; parameter estimation; bioprocesses

(This special issue belongs to the Section Fermentation Process Design)

Microbiota and Metabolite Changes in Fermented Foods

edited by

Dimitrios A. Anagnostopoulos

submission deadline 31 Aug 2025 | 4 articles | Viewed by 6580 | Submission Open

Keywords: fermented products; fermentation stages; microbiota; metabolites; sensorial attributes

(This special issue belongs to the Section Fermentation for Food and Beverages)

New Research on Strains Improvement and Microbial Biosynthesis, 2nd Edition

edited by

Penka Petrova

and

Kaloyan Petrov

submission deadline 31 Aug 2025 | 5 articles | Viewed by 5898 | Submission Open

Keywords: genetic improvement; biosynthetic pathways engineering; microbial biosynthesis of new metabolites; biofuels; enzymes production; bioactive molecules; process optimization

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

Progress in Microbial Treatment of Wastewater, Solid Wastes and Waste Gases, 2nd Edition

edited by

Pengsong Li

Yan Dang

and Lijuan Zhang

submission deadline 31 Aug 2025 | 4 articles | Viewed by 5819 | Submission Open

Keywords: aerobic composting; algal– bacterial consortium; anaerobic digestion; bioelectrochemical system; biofuel; meta-omics; microbial electrosynthesis; microbial fuel cell; microbial wastewater treatment; syngas fermentation

(This special issue belongs to the Section Industrial Fermentation)

Optimization and Analysis of the Fermentation Process for Microbial Products: 2nd Edition

edited by

Xidong Ren

submission deadline 31 Aug 2025 | 1 articles | Viewed by 2107 | Submission Open

Keywords: process optimization; integrated fermentation; technoeconomic analysis; artificial intelligence; artificial neural network; factorial designs; genomics; transcriptomics; proteomics; metabolomics

(This special issue belongs to the Section Fermentation Process Design)

Yarrowia lipolytica: A Beneficial Yeast as a Biofactory for Biotechnological Applications: 3rd Edition

edited by

Bartłomiej Zieniuk

submission deadline 31 Aug 2025 | 1 articles | Viewed by 1797 | Submission Open

Keywords: Yarrowia lipolytica; secondary metabolites; single-cell oils (SCO); lipid accumulation; single-cell proteins (SCP); enzymes biosynthesis; lipases production; metabolic engineering; organic acids synthesis; agri-food waste upgradation; whole-cell catalysis; biosynthesis of metal nanoparticles; bioreactor processes

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

Recent Trends in Lactobacillus and Fermented Food, 3rd Edition

edited by

Laura Stan

and

Simona Chis

submission deadline 31 Aug 2025 | 1 articles | Viewed by 1353 | Submission Open

Keywords: lactic acid bacteria; fermentation; adaptability; bioactive compounds; textural and sensory attributes; nutritional value

(This special issue belongs to the Section Fermentation for Food and Beverages)

Biorefining for Biofuel Production

edited by

Timothy Tse

submission deadline 31 Aug 2025 | 1 articles | Viewed by 435 | Submission Open

Keywords: biorefining; biofuels; microbial strains; biocatalysis; enzyme; fermentation; circular economy

(This special issue belongs to the Section Industrial Fermentation)

In Vitro Fermentation, Fourth Edition

edited by

Mengzhi Wang

submission deadline 15 Sep 2025 | 2 articles | Viewed by 2695 | Submission Open

Keywords: microbe; microbial ecology; nutrients; digestibility; enzyme; metabolite; gas; rumen; fermenter; medium

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

Research Progress of Rumen Fermentation

edited by

Aleksandro S. Da Silva

submission deadline 15 Sep 2025 | 3 articles | Viewed by 1830 | Submission Open

Keywords: ruminant nutrition; feed; animal nutrition; ruminal fermentation; microbiota

(This special issue belongs to the Section Probiotic Strains and Fermentation)

Science and Technology of Winemaking

edited by Aude A. Watrelot

submission deadline 15 Sep 2025 | 1 articles | Viewed by 1309 | Submission Open

Keywords: climate-adapted cultivars; fumaric acid; cation-exchange resins; yeasts strains; ultrasounds; extraction; dealcoholisation; tannins; anthocyanins; sustainability

(This special issue belongs to the Section Fermentation for Food and Beverages)

Strategies for Optimal Fermentation by Using Modern Tools and Methods, 2nd Edition

edited by Alexander Dimitrov Kroumov

submission deadline 15 Sep 2025 | Viewed by 118 | Submission Open

Keywords: fermentation process; metabolic control; process modeling; design; optimization

(This special issue belongs to the Section Fermentation Process Design)

Saccharomyces cerevisiae Strains and Fermentation: 2nd Edition

edited by

Chiara Nadai

submission deadline 20 Sep 2025 | 3 articles | Viewed by 6304 | Submission Open

Keywords: Saccharomyces cerevisiae strains; fermentation; wine; oenology; microflora; malolactic fermentation; metabolic pathways; climate change

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

Precision Fermentation: Applications in the Food and Beverage Industry

edited by Tiago Lima de Albuquerque

submission deadline 30 Sep 2025 | 9 articles | Viewed by 10731 | Submission Open

Keywords: precision fermentation; food and beverage industry; microbial engineering; flavor optimization; nutritional enhancement; sustainable food production; synthetic biology; fermented food ingredients; textural improvements; fermentation technologies; industrial fermentation; protein alternatives

(This special issue belongs to the Section Fermentation for Food and Beverages)

Anaerobic Digestion: Waste to Energy: 2nd Edition

edited by Kenji Sakai

submission deadline 30 Sep 2025 | 3 articles | Viewed by 4350 | Submission Open

Keywords: biogas production; methane fermentation; waste treatment; mixed culture system; microbial community structure (and function); digestate utilization (liquid fertilizer); sludge utilization (composting); mitigation of greenhouse gas; bio-energy and renewable energy; organic waste treatment (management and valorization stabilization); acidogenesis/acetogenesis/methanogenesis; anaerobic digestion; waste recycling

(This special issue belongs to the Section Industrial Fermentation)

Health Benefits of Lactic Acid Bacteria: Gut Microbiota and Beyond

edited by

Roberta Prete

submission deadline 30 Sep 2025 | 1 articles | Viewed by 3449 | Submission Open

Keywords: lactic acid bacteria; lactobacilli; probiotics; postbiotics; bioactive metabolites; neurotransmitters; gut microbiota; health benefits; fermented foods; functional foods

(This special issue belongs to the Section Probiotic Strains and Fermentation)

Innovative Strategies for the Management of Wine Fermentations: 2nd Edition

edited by

Simona Guerrini

submission deadline 30 Sep 2025 | 2 articles | Viewed by 3042 | Submission Open

Keywords: wine fermentations; malolactic fermentation; winemaking; wine quality; microbial starters; predictive microbiology; yeasts; lactic acid bacteria

(This special issue belongs to the Section Fermentation for Food and Beverages)

Lignocellulosic Biomass Decomposition and Bioconversion, 2nd Edition

edited by

Xin Zhou

submission deadline 30 Sep 2025 | 1 articles | Viewed by 1213 | Submission Open

Keywords: lignocellulosic biomass; biorefinery; biochemicals; biomaterials

(This special issue belongs to the Section Industrial Fermentation)

Advances in Fermented Foods and Beverages

edited by

Camelia Elena Luchian

submission deadline 30 Sep 2025 | 1 articles | Viewed by 911 | Submission Open

Keywords: health promotion; probiotics; bioactive peptides; functional foods; microbial fermentation; anticarcinogenic; cardiovascular disease; antimicrobial effect; lactic acid bacteria; nutraceuticals

(This special issue belongs to the Section Fermentation for Food and Beverages)

Nutrition and Health of Fermented Foods—4th Edition

edited by

Guijie Chen

and

Zhuqing Dai

submission deadline 30 Sep 2025 | Viewed by 146 | Submission Open

Keywords: fermented foods; nutrition and health; innovative fermentation approaches; multi-omics techniques; fermentation process; metabolic characteristics and biotransformation; molecular mechanisms; potential risk; prebiotic activity

(This special issue belongs to the Section Fermentation for Food and Beverages)

Application and Research of Solid State Fermentation, 2nd Edition

edited by

Yafan Cai

submission deadline 30 Sep 2025 | Viewed by 138 | Submission Open

Keywords: solid-state fermentation (SSF); microbial fermentation; organic waste; reactor design; SSF process; feed protein; single-cell protein; compost; bio-energy

(This special issue belongs to the Section Industrial Fermentation)

Novel and Old Insights for Biotechnological Exploitation of Actinobacterial Strain Fermentations

edited by

Giuseppe Gallo

submission deadline 30 Sep 2025 | Viewed by 134 | Submission Open

Keywords: actinobacteria; fermentation; biotechnological exploitation; metabolic engineering; bioactive compounds; strain improvement; omics studies; mixed cultures; enzyme production; microbial interactions

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

The Industrial Feasibility of Biosurfactants

edited by

Cristiano J. De Andrade

submission deadline 30 Sep 2025 | Viewed by 97 | Submission Open

Keywords: glycolipids; rhamnolipids; sophorolipids; mannosylerythritol lipids; lipopeptides and lipoproteins; surfactin; polymeric biosurfactants

(This special issue belongs to the Section Industrial Fermentation)

Bioconversion of Biomass for Effective Production of Biofuels as Well as Biobased Chemicals and Materials, 2nd Edition

edited by

Hironaga Akita

submission deadline 30 Sep 2025 | Viewed by 70 | Submission Open

Keywords: biomass conversion; enzymatic hydrolysis; microbial identification; metabolic engineering; microbial fermentation; biofuel; biobased chemicals and materials; industrial biotechnology

(This special issue belongs to the Section Industrial Fermentation)

The Role of Non-Saccharomyces Yeasts in Crafting Alcoholic Drinks

edited by

Ivana Karabegović

Bojana R. Danilović

and

Sandra Stamenković Stojanović

submission deadline 30 Sep 2025 | Viewed by 27 | Submission Open

Keywords: non-Saccharomyces yeasts; alcoholic drinks fermentation; alcoholic fermentation

(This special issue belongs to the Section Fermentation for Food and Beverages)

Fermented Dairy Products: From Artisanal Production to Functional Products and Beyond

edited by

Spiros Paramithiotis

and

John Samelis

submission deadline 15 Oct 2025 | 4 articles | Viewed by 9676 | Submission Open

Keywords: fermented dairy products; microbial fermentation; microorganisms; metabolic end products; bioactive compounds; personalized nutrition

(This special issue belongs to the Section Fermentation for Food and Beverages)

Fermentation Processes: Modeling, Optimization and Control: 3rd Edition

edited by

Ricardo Aguilar-López

submission deadline 15 Oct 2025 | Viewed by 19 | Submission Open

Keywords: fermentation technology; process modeling; simulation analysis; process optimization; control process; sustainability issues; artificial intelligence; machine learning

(This special issue belongs to the Section Fermentation Process Design)

Fermentation Technologies for the Production of High-Quality Feed: 2nd Edition

edited by Jianxin Xiao

submission deadline 20 Oct 2025 | Viewed by 47 | Submission Open

Keywords: fermentation process; fermented feed; feed additives; feed resources; animal health; animal growth; nutritional value; feed preservation; microorganisms

(This special issue belongs to the Section Industrial Fermentation)

The Health-Boosting Power of Fermented Foods and Their By-Products

edited by

Federica Tonolo

and

Maria Pia Rigobello

submission deadline 25 Oct 2025 | 1 articles | Viewed by 605 | Submission Open

Keywords: antioxidant compounds; fermentation; fermented foods; human/animal health; bioactive compounds; bioactive peptides; functional foods; nutraceuticals; benefits of fermented foods; probiotic foods

(This special issue belongs to the Section Fermentation for Food and Beverages)

Metabolic Engineering, Strain Modification and Industrial Application

edited by

Jianzhong Xu

submission deadline 30 Oct 2025 | Viewed by 97 | Submission Open

Keywords: metabolic engineering; synthetic biology; strain improvement; industrial applications

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

Sustainable Single-Cell Proteins with Non-Grain Feedstocks

edited by Xin Wu

submission deadline 30 Oct 2025 | Viewed by 32 | Submission Open

Keywords: single-cell proteins; future food and feed; industrial and agricultural by-products; straw; methane and methanol; yeast; filamentous fungi; fermentation

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

Lactic Acid Bacteria Metabolism

edited by

Renpeng Du

and

Dan Zhao

submission deadline 31 Oct 2025 | 4 articles | Viewed by 2794 | Submission Open

Keywords: probiotics; prebiotics; lactic acid bacteria; yeasts; metabolic processes; beneficial metabolites

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

Cyanobacteria and Eukaryotic Microalgae (2nd Edition)

edited by

Hristo Najdenski

and

Yana E. Ilieva

submission deadline 31 Oct 2025 | Viewed by 92 | Submission Open

Keywords: cyanobacteria; eukaryotic microalgae; biodiversity; natural compounds; secondary metabolites

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

Towards the Sustainable Treatment of Organic Wastes via Various Novel Biotechnologies, 2nd Edition

edited by Xuedong Zhang and Xuefeng Zhu

submission deadline 31 Oct 2025 | Viewed by 19 | Submission Open

Keywords: organic waste treatment; food waste; agricultural waste; biotechnology; anaerobic fermentation; enzymatic pretreatment; bioenergy recovery; resource recovery; carbon neutralization; sustainability; life cycle assessment (LCA)

(This special issue belongs to the Section Industrial Fermentation)

Applications of Lactic Acid Bacteria in Fermented Foods and Beverages: Second Edition

edited by

Alessandra Pino

submission deadline 31 Oct 2025 | Viewed by 19 | Submission Open

Keywords: lactic acid bacteria; fermented foods; probiotics

(This special issue belongs to the Section Fermentation for Food and Beverages)

Ruminal Fermentation: 2nd Edition

edited by Cláudia Braga Pereira Bento

submission deadline 31 Oct 2025 | Viewed by 12 | Submission Open

Keywords: ammoniacal nitrogen; animal nutrition; antimicrobials; enteric methane; environmental impact; feed additives; feed efficiency; next-generation sequencing; rumen parameters; ruminal microbiota; ruminants

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

The Future of Fermentation Technology in the Biorefining Process: 3rd Edition

edited by

Bartłomiej Zieniuk

submission deadline 20 Nov 2025 | Viewed by 263 | Submission Open

Keywords: bioprocessing; biorefinery; alternative raw materials; utilization of industrial side streams; sustainability assessment

(This special issue belongs to the Section Industrial Fermentation)

Valorisation of Agro-Industrial By-Products through Fermentation or Eco-Friendly Techniques

edited by

Paola Foti

and

Flora Valeria Romeo

submission deadline 20 Nov 2025 | Viewed by 24 | Submission Open

Keywords: by-product; fermentation; starter cultures; bioactive molecules; biotechnology approaches

(This special issue belongs to the Section Industrial Fermentation)

Algae Biotechnology for Biofuel Production and Bioremediation

edited by

Toshiyuki Takahashi

submission deadline 30 Nov 2025 | 3 articles | Viewed by 6921 | Submission Open

Keywords: algae; biofuels; lipids; bioremediation; biostimulation; bioaugmentation; heavy metals; water treatment; biomass production; harvesting

(This special issue belongs to the Section Industrial Fermentation)

Application of Fermentation Technology in Animal Nutrition: 2nd Edition

edited by

Siran Wang

Lin Sun

, Lei Chen and Jie Bai

submission deadline 30 Nov 2025 | 3 articles | Viewed by 2881 | Submission Open

Keywords: fermentation; silage; forage; by-product; feed; nutrition; animal

(This special issue belongs to the Section Industrial Fermentation)

Yeast Fermentation, 2nd Edition

edited by

Shuobo Shi

submission deadline 30 Nov 2025 | 1 articles | Viewed by 1872 | Submission Open

Keywords: yeast; fermentation; fermentation process; co-culture; stress tolerance; chemicals; foods; interaction between microorganisms; fermentation efficiency; metabolic engineering; strain development

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

Fungal Secondary Metabolism: Discovery and Characterization of Biologically Active Compounds

edited by

Wen Huang

and

Ying Liu

submission deadline 30 Nov 2025 | 1 articles | Viewed by 676 | Submission Open

Keywords: fungi; fermentation; secondary metabolism; functional component; separation and purification; bioactivity; structural characteristics; omics; metabolic pathways; biosynthesis

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

YBC2025: Yeast in Bioeconomy

edited by

Mohamed Koubaa

and

Elia Tomás Pejó

submission deadline 30 Nov 2025 | 1 articles | Viewed by 541 | Submission Open

Keywords: yeast bioeconomy; fermentation technology; techno-economic assessment; life cycle analysis; process scale-up

(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)

Yeast Biotechnology in Valorization of Waste and By-Products

edited by

Silvio Silvério da Silva

submission deadline 30 Nov 2025 | Viewed by 407 | Submission Open

Keywords: industrialization; waste management; environmental impact; yeast-derived products; low-cost substrates; sustainability

(This special issue belongs to the Section Industrial Fermentation)

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