Special Issues

Fermentation publishes Special Issues to create collections of papers on specific topics, with the aim of building a community of authors and readers to discuss the latest research and develop new ideas and research directions. Special Issues are led by Guest Editors, who are experts on the topic and all Special Issue submissions follow MDPI's standard editorial process. The journal’s Editor-in-Chief and/or designated Editorial Board Member will oversee Guest Editor appointments and Special Issue proposals, checking their content for relevance and ensuring the suitability of the material for the journal. The papers published in a Special Issue will be collected and displayed on a dedicated page of the journal’s website. Further information on MDPI's Special Issue policies and Guest Editor responsibilities can be found here. For any inquiries related to a Special Issue, please contact the Editorial Office.

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Advances in Fermented Fruits and Vegetables submission deadline 30 Oct 2025 | 7 articles | Viewed by 14243 | Submission Open
Keywords: fermentation science; fermented fruits and vegetables; health benefits; microbial diversity; nutritional value; technological advances
(This special issue belongs to the Section Fermentation for Food and Beverages)
Microbial Production of Industrial Enzymes
edited by
submission deadline 30 Oct 2025 | 2 articles | Viewed by 2540 | Submission Open
Keywords: mining and evolution of enzymes; high-level expression of industrial enzymes; fermentation process control of enzymes; production of industrial enzymes; modification of host strains
(This special issue belongs to the Section Industrial Fermentation)
Metabolic Engineering, Strain Modification and Industrial Application
edited by
submission deadline 30 Oct 2025 | Viewed by 163 | Submission Open
Keywords: metabolic engineering; synthetic biology; strain improvement; industrial applications
(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)
Sustainable Single-Cell Proteins with Non-Grain Feedstocks
edited by Xin Wu
submission deadline 30 Oct 2025 | Viewed by 66 | Submission Open
Keywords: single-cell proteins; future food and feed; industrial and agricultural by-products; straw; methane and methanol; yeast; filamentous fungi; fermentation
(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)
Lactic Acid Bacteria Metabolism
edited by and
submission deadline 31 Oct 2025 | 5 articles | Viewed by 5607 | Submission Open
Keywords: probiotics; prebiotics; lactic acid bacteria; yeasts; metabolic processes; beneficial metabolites
(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)
Cyanobacteria and Eukaryotic Microalgae (2nd Edition) submission deadline 31 Oct 2025 | Viewed by 215 | Submission Open
Keywords: cyanobacteria; eukaryotic microalgae; biodiversity; natural compounds; secondary metabolites
(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)
Applications of Lactic Acid Bacteria in Fermented Foods and Beverages: Second Edition
edited by
submission deadline 31 Oct 2025 | Viewed by 65 | Submission Open
Keywords: lactic acid bacteria; fermented foods; probiotics
(This special issue belongs to the Section Fermentation for Food and Beverages)
Ruminal Fermentation: 2nd Edition
edited by Cláudia Braga Pereira Bento
submission deadline 31 Oct 2025 | Viewed by 61 | Submission Open
Keywords: ammoniacal nitrogen; animal nutrition; antimicrobials; enteric methane; environmental impact; feed additives; feed efficiency; next-generation sequencing; rumen parameters; ruminal microbiota; ruminants
(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)
Towards the Sustainable Treatment of Organic Wastes via Various Novel Biotechnologies, 2nd Edition
edited by Xuedong Zhang and Xuefeng Zhu
submission deadline 31 Oct 2025 | Viewed by 51 | Submission Open
Keywords: organic waste treatment; food waste; agricultural waste; biotechnology; anaerobic fermentation; enzymatic pretreatment; bioenergy recovery; resource recovery; carbon neutralization; sustainability; life cycle assessment (LCA)
(This special issue belongs to the Section Industrial Fermentation)
Probiotics, Prebiotics and Their Use as Innovative Ingredients in Food Technology, 2nd Edition
edited by
submission deadline 15 Nov 2025 | 2 articles | Viewed by 2522 | Submission Open
Keywords: functional foods; beneficial microorganisms; probiotics; prebiotics; synbiotics; postbiotics; psychobiotics; gut microbiota; fermentation; nutrition and human health; vegetables; fruits; microbial analyses; physico-chemical analyses
(This special issue belongs to the Section Probiotic Strains and Fermentation)
The Future of Fermentation Technology in the Biorefining Process: 3rd Edition submission deadline 20 Nov 2025 | 1 articles | Viewed by 872 | Submission Open
Keywords: bioprocessing; biorefinery; alternative raw materials; utilization of industrial side streams; sustainability assessment
(This special issue belongs to the Section Industrial Fermentation)
Valorisation of Agro-Industrial By-Products Through Fermentation or Eco-Friendly Techniques submission deadline 20 Nov 2025 | 2 articles | Viewed by 727 | Submission Open
Keywords: by-product; fermentation; starter cultures; bioactive molecules; biotechnology approaches
(This special issue belongs to the Section Industrial Fermentation)
Algae Biotechnology for Biofuel Production and Bioremediation submission deadline 30 Nov 2025 | 3 articles | Viewed by 7543 | Submission Open
Keywords: algae; biofuels; lipids; bioremediation; biostimulation; bioaugmentation; heavy metals; water treatment; biomass production; harvesting
(This special issue belongs to the Section Industrial Fermentation)
Application of Fermentation Technology in Animal Nutrition: 2nd Edition
edited by , , Lei Chen and Jie Bai
submission deadline 30 Nov 2025 | 5 articles | Viewed by 4643 | Submission Open
Keywords: fermentation; silage; forage; by-product; feed; nutrition; animal
(This special issue belongs to the Section Industrial Fermentation)
Yeast Fermentation, 2nd Edition
edited by
submission deadline 30 Nov 2025 | 1 articles | Viewed by 2002 | Submission Open
Keywords: yeast; fermentation; fermentation process; co-culture; stress tolerance; chemicals; foods; interaction between microorganisms; fermentation efficiency; metabolic engineering; strain development
(This special issue belongs to the Section Yeast)
Biofuels and Green Technology
edited by
submission deadline 30 Nov 2025 | 2 articles | Viewed by 1494 | Submission Open
Keywords: sustainable energy; biofuels; biomass; green technologies; fermentation; bioenergy production; enzyme engineering; bio-based chemicals
(This special issue belongs to the Section Industrial Fermentation)
YBC2025: Yeast in Bioeconomy submission deadline 30 Nov 2025 | 1 articles | Viewed by 1010 | Submission Open
Keywords: yeast bioeconomy; fermentation technology; techno-economic assessment; life cycle analysis; process scale-up
(This special issue belongs to the Section Yeast)
Fungal Secondary Metabolism: Discovery and Characterization of Biologically Active Compounds
edited by and
submission deadline 30 Nov 2025 | 1 articles | Viewed by 902 | Submission Open
Keywords: fungi; fermentation; secondary metabolism; functional component; separation and purification; bioactivity; structural characteristics; omics; metabolic pathways; biosynthesis
(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)
Bioactive Compounds and Functional Properties of Fermented Foods submission deadline 30 Nov 2025 | 1 articles | Viewed by 554 | Submission Open
Keywords: fermentation science; fermented foods; bioactive compounds; health benefits; microbial diversity; nutritional value; technological advances
(This special issue belongs to the Section Fermentation for Food and Beverages)
Yeast Biotechnology in Valorization of Waste and By-Products submission deadline 30 Nov 2025 | Viewed by 435 | Submission Open
Keywords: industrialization; waste management; environmental impact; yeast-derived products; low-cost substrates; sustainability
(This special issue belongs to the Section Yeast)
Lignocellulosic Biomass in Biorefinery Processes
edited by Carlos Eduardo De Araújo Padilha, José Antonio Pérez-Pimienta and
submission deadline 30 Nov 2025 | Viewed by 356 | Submission Open
Keywords: fractionation; pretreatment; circular economy; sustainability
(This special issue belongs to the Section Industrial Fermentation)
Anaerobic Digestion to High Value Organic Fertilizer and Biogas submission deadline 30 Nov 2025 | Viewed by 149 | Submission Open
Keywords: anaerobic digestion; biogas production; organic fertilizers; digestate valorization; nutrient recovery; co-digestion; waste-to-energy; circular bioeconomy; pre-treatment strategies; sustainable waste management
(This special issue belongs to the Section Industrial Fermentation)
New Research on Fungal Secondary Metabolites, 3rd Edition
edited by
submission deadline 15 Dec 2025 | 1 articles | Viewed by 636 | Submission Open
Keywords: functional gene and genome; solid-state cultivation; metabolic pathway; bioprocessing efficiency; chemical inducers; high-throughput screen; co-cultivation; pilot-scale study; kinetic modeling; structural modification
(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)
Advances in Hydrogen Production: Toward a Sustainable Energy Future
edited by
submission deadline 20 Dec 2025 | Viewed by 33 | Submission Open
Keywords: biohydrogen; fermentation; dark fermentation; photofermentation; metabolic engineering; microbial consortia; renewable energy; bioprocessing; waste valorization; biotechnology
(This special issue belongs to the Section Industrial Fermentation)
Innovative Biotechnological Production of Microbial Polysaccharides submission deadline 30 Dec 2025 | 1 articles | Viewed by 2901 | Submission Open
Keywords: microorganisms; carbohydrate polymers; bioreactors; production optimization; sustainability
(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)
Feature Review Papers on Fermentation for Food and Beverages 2025
edited by
submission deadline 30 Dec 2025 | Viewed by 80 | Submission Open
Keywords: saccharomyces; non-saccharomyces; lachancea thermotolerans; torulaspora delbrueckii; metschnikowia pulcherrima; hanseniaspora vineae; brettanomyces/dekkera; lactic acid bacteria; lactiplantibacillus plantarum; bioprotection; biocontrol; sensory profile; off flavors; bacteriocins; zymocins; enzymes; emerging technologies; aroma; color; functional foods; mixed fermentations; co-inoculations; sequential inoculations
(This special issue belongs to the Section Fermentation for Food and Beverages)
Fermentation: 10th Anniversary
edited by
submission deadline 31 Dec 2025 | 30 articles | Viewed by 92976 | Submission Open
Keywords: microbial metabolism; fermentation process; strain improvement; bioprocesses; bioreactor design; scale-up; beverages; fermented food; bioconversion; biofuels; commodity chemicals; pharmaceuticals; bioproducts; probiotics; gut microbiota
Feature Review Papers in Microbial Metabolism, Physiology & Genetics, 2nd Edition
edited by
submission deadline 31 Dec 2025 | 6 articles | Viewed by 20932 | Submission Open
Keywords: microbial metabolism; metabolic engineering; microbial stress; microbial physiology; strain improvement; specialized metabolites; bioprocesses; bioreactors; secondary metabolism; genetic transformations
(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)
Feature Review Papers in Industrial Fermentation, 2nd Edition submission deadline 31 Dec 2025 | 3 articles | Viewed by 17917 | Submission Open
Keywords: fermentation for production of chemicals and materials; fermentation for production of biofuels; fermentation for production of pharmaceuticals; environmental bioprocesses; bioconversion and valorization of pollutants; bioprocesses for greenhouse gas mitigation; biodegradation of pollutants; bioreactor design and modeling; biorefinery processes
(This special issue belongs to the Section Industrial Fermentation)
Fermentation and Biotechnology in Wine Making submission deadline 31 Dec 2025 | 3 articles | Viewed by 10205 | Submission Open
Keywords: microbial genomics; microbial physiology; fermentation performance; grape and wine spoilage; sulfite reduction; non-thermal technologies; ethanol reduction; enzymatic activities; flavor improvement; bioinformatics
(This special issue belongs to the Section Fermentation for Food and Beverages)
10th Anniversary of Fermentation: Feature Papers in Section "Probiotic Strains and Fermentation"
edited by
submission deadline 31 Dec 2025 | 8 articles | Viewed by 8991 | Submission Open
Keywords: probiotics; high-throughput screening; lactic acid bacteria; gut microbiota; lactobacillus; bifidobacterium; bacillus; acetic acid bacteria; yeast; fungi
(This special issue belongs to the Section Probiotic Strains and Fermentation)
10th Anniversary of Fermentation: Feature Papers in Section “Microbial Metabolism, Physiology & Genetics” submission deadline 31 Dec 2025 | 7 articles | Viewed by 6613 | Submission Open
Keywords: fermentation; natural biocides; primary and secondary functional metabolites; antimicrobial peptides; pathogen control; antimicrobial resistance; genetic improvement of microorganisms; single-cell proteins; metabolic engineering; sustainable biotechnologies; green chemistry; enzymatic biotransformation; antimicrobial innovation; uncultured and unculturable microorganisms; chemicals and fuels for CO2 transformation; biomanufacturing technology; bioreactor technologies
(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)
Bioactive Compounds in Grain Fermentation: 2nd Edition
edited by and
submission deadline 31 Dec 2025 | 2 articles | Viewed by 3522 | Submission Open
Keywords: cereal grains; fermentation; bioactive compounds; digestion and absorption; gastrointestinal tract; polyphenols; flavones; antioxidants; fermented food; health benefits
(This special issue belongs to the Section Fermentation for Food and Beverages)
Energy Converter: Anaerobic Digestion, 2nd Edition
edited by
submission deadline 31 Dec 2025 | 1 articles | Viewed by 3479 | Submission Open
Keywords: anaerobic digestion; organic wastes; biogas; renewable natural gas; nutrient recovery; volatile fatty acids; anaerobic digester; bioproducts; organic fertilizer; solid digestate; anaerobic effluent
(This special issue belongs to the Section Industrial Fermentation)
10th Anniversary of Fermentation: Feature Papers in the “Fermentation Process Design” Section submission deadline 31 Dec 2025 | 4 articles | Viewed by 3332 | Submission Open
Keywords: process design; bioreactor performance; scale-up; scale-down; microbial kinetics; fed-batch; purification methods; bioprocess monitoring
(This special issue belongs to the Section Fermentation Process Design)
Lactic Acid Bacteria: Evaluation of Benefits on Human Health and Improvement of Food Safety
edited by Patricia Castellano, Susana Salva and
submission deadline 31 Dec 2025 | 5 articles | Viewed by 3190 | Submission Open
Keywords: lactic acid bacteria; probiotic and postbiotics; functional food; human health applications; food safety; biopreservation; genetic engineering; food quality
(This special issue belongs to the Section Fermentation for Food and Beverages)
10th Anniversary of Fermentation: Feature Papers in Section "Industrial Fermentation"
edited by Giulia Bozzano
submission deadline 31 Dec 2025 | 5 articles | Viewed by 2918 | Submission Open
Keywords: biorefinery; biofuels; bioreactor design; microbial fuel cells; industrial fermentation; wastewater; anaerobic digestion
(This special issue belongs to the Section Industrial Fermentation)
10th Anniversary of Fermentation: Feature Papers in the "Fermentation for Food and Beverages" Section
edited by
submission deadline 31 Dec 2025 | 3 articles | Viewed by 2589 | Submission Open
Keywords: Saccharomyces; non-Saccharomyces; Lactic acid bacteria; Lactobacillus plantarum; Acetic acid bacteria; Probiotics; prebiotics and postbiotics; Biocontrol; Sensory profile and consumer acceptance; Off-flavors; Bacteriocins; Enzymes; Functional foods; Mixed fermentations; Co-inoculations/ sequential inoculations; Solid fermentation; Fermentation models.
(This special issue belongs to the Section Fermentation for Food and Beverages)
Applications of Computer Science and AI to Fermented Foods and Beverages
edited by
submission deadline 31 Dec 2025 | 1 articles | Viewed by 1651 | Submission Open
Keywords: fermented food and beverages; wine; beer; aroma and flavor; AI; data science; machine learning; deep learning; natural language processing; wine informatics
(This special issue belongs to the Section Fermentation Process Design)
Sustainable Grape Production, Climate Change, and Wine Quality
edited by Rafael Andrés Peinado Amores
submission deadline 31 Dec 2025 | 1 articles | Viewed by 991 | Submission Open
Keywords: climate change; sustainable grape production; biotechnology; non-Saccharomyces species; wine aroma
(This special issue belongs to the Section Fermentation for Food and Beverages)
Women’s Special Issue Series: Fermentation
edited by and
submission deadline 31 Dec 2025 | Viewed by 165 | Submission Open
Keywords: microbial metabolism; fermentation process; strain improvement; bioprocesses; bioreactor design; scale-up; beverages; fermented food; bioconversion; biofuels; commodity chemicals; pharmaceuticals; bioproducts; probiotics; gut microbiota
Dissecting Actinobacteria: From Ecology and Biotechnological Value to Synthetic Biology
edited by , Mariana Lanfranconi and José Sebastián Dávila Costa
submission deadline 31 Dec 2025 | Viewed by 112 | Submission Open
Keywords: microbial production; metabolic pathways; omic techniques; microbial degradation; genetic engineering; process optimization
(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)
Biotechnological Strategies for Agro-Industrial Food Waste Management
edited by
submission deadline 31 Dec 2025 | Viewed by 57 | Submission Open
Keywords: agricultural food waste; food waste management; bioenergy; biofuel; waste valorization; biotechnology; starter cultures; fermentation process
(This special issue belongs to the Section Industrial Fermentation)
Emerging Microbial Technologies in Fermentation: Innovations in Food, Environmental, and Health Bioprocesses submission deadline 31 Dec 2025 | Viewed by 53 | Submission Open
Keywords: environmental biotechnology; functional foods; genetically engineered microorganisms; microbial fermentation; postbiotics and microbial metabolites; probiotic biotechnology; sustainable bioprocesses; synthetic biology and microbial consortia; valorization of agro-industrial by-products
(This special issue belongs to the Section Fermentation for Food and Beverages)
Application of Fermentation Technology in Biomass Utilization and Biofuels Production, 2nd Edition
edited by
submission deadline 31 Dec 2025 | Viewed by 46 | Submission Open
Keywords: photo fermentation; electro fermentation; dark fermentation; integrated fermentation; liquid biofuels production; biogas/biohydrogen production and purification; lifecycle analysis of bioenergy production; metabolic engineering; economical evaluation of bioenergy production
(This special issue belongs to the Section Industrial Fermentation)
Microbiological Challenges in Malt and Beer Production
edited by Sunčica Beluhan, Ksenija Markov and Andreja Leboš Pavunc
submission deadline 31 Dec 2025 | Viewed by 28 | Submission Open
Keywords: climate change factors; mycotoxigenic fungi and mycotoxins; yeast; bacteria; beer quality; microbiological spoilage; consumer risk assessment
(This special issue belongs to the Section Fermentation for Food and Beverages)
Biodegradation of Microplastics by Fermentative Microorganisms
edited by and Yufen Wang
submission deadline 31 Dec 2025 | Viewed by 18 | Submission Open
Keywords: microplastic biodegradation; microbe– plastic interactions; enzymatic depolymerization; pretreatment; fermentative consortia; anaerobic fermentation; metabolomics; metagenomics
(This special issue belongs to the Section Fermentation Process Design)
Emerging Trends in Functional Lipid Biosynthesis and Precision Fermentation submission deadline 10 Jan 2026 | Viewed by 34 | Submission Open
Keywords: functional lipids; innovative foods; food ingredients; life cycle analysis; precision fermentation; bioprocesses; metabolic engineering
(This special issue belongs to the Section Microbial Metabolism, Physiology & Genetics)
Data-Driven Design and Analysis of Industrially Applicable Microbes
edited by and
submission deadline 20 Jan 2026 | Viewed by 36 | Submission Open
Keywords: data-driven microbial engineering; computational biotechnology; flux balance analysis (FBA); genome-scale metabolic models (GEMs); metabolic optimization; industrial microbiology; systems biology; machine learning in biotechnology; bioproduction; omics integration
(This special issue belongs to the Section Fermentation Process Design)
Fermentation Processes and Product Development
edited by
submission deadline 20 Jan 2026 | Viewed by 35 | Submission Open
Keywords: fermentation technologies; bioprocess intensification; sustainable biomanufacturing; scale-up strategies; bio-based products; industrial biotechnology; circular bioeconomy; biomass valorisation; environmental impact reduction; renewable feedstocks
(This special issue belongs to the Section Fermentation Process Design)
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