Overexploitation has driven catastrophic declines in most turtle species in Asia. Many turtles are seized annually by law enforcement officers; unfortunately, seized turtles often lack associated information on their provenance. There is also taxonomic confusion regarding the clear delineation of turtle species and subspecies in Asia. This lack of provenance data and taxonomic uncertainty is problematic as it may preclude release, make appropriate release sites hard to select, or result in genetic pollution when animals are released. In this study, we amassed and analyzed the largest number of genetic samples of the critically endangered big-headed turtle (Platysternon megacephalum) to date. Our phylogenetic and network results based on nearly 500 sequences of a mitochondrial ND4 fragment corroborate the earlier hypothesis that only two of the three currently recognized subspecies have strong molecular support and that there is greater genetic structuring within one subspecies than has been previously reported. The vast majority of P. megacephalum confiscated from the trade in Vietnam belong to Subclade 3 of P. m. peguense, and this subclade is the most broadly distributed taxon of the big-headed turtle in Vietnam based on samples with known localities. Nonetheless, for the other two subclades, all their samples originate from the trade and could not be assigned to any geographic provenance because of the lack of wild-caught samples. In addition, our results reveal two trade centers of the species, Quang Ninh Province on the border between China and Vietnam and Kon Tum Province in the Central Highlands. However, smaller animal seizures occur across the range of the species in Vietnam. While the data presented here have facilitated the selection of appropriate release sites for confiscated P. megacephalum, the significant costs of genetic screening and the shortage of samples from wild animals with good localities hinder the rewilding efforts, especially for conservation practitioners working in countries where conservation activities are not well funded and research on poorly studied species is still limited. Nevertheless, we urge that wildlife translocations include robust pre-translocation genetic screening to ensure that all individual animals are reintroduced at appropriate sites. Full article

Indo-Pacific bottlenose dolphins (Tursiops aduncus) are a coastal species found in Thai waters off the coasts of the Andaman Sea and the Gulf of Thailand. This species was recently re-listed as near-threatened by the IUCN Red List, though the population status in Thai seas is not known. Here, we investigated genetic diversity, population structure, maternal lineage, and demographics by analyzing skin tissue samples (n = 30) of T. aduncus stranded along the Andaman coastline of Thailand between 1990 and 2019. This study was based on 11 microsatellite loci and 265 bp mtDNA control regions compared to data available through the National Center for Biotechnology Information (NCBI). From microsatellites, the observed heterozygosity (Ho) ranged from 0.46 to 0.85. The mean fixation index (F) value for all loci was 0.10 ± 0.04, which suggests some degree of inbreeding. Two genetic clusters (the most likely K at K = 2) were observed in T. aduncus through the population structure analysis using multiple criteria. For the mtDNA control region, a total of 17 haplotypes were found for dolphins in Thai seas (14 haplotypes from our samples; three haplotypes from the NCBI database) with high levels of haplotype diversity (h) at 0.926 ± 0.027 and nucleotide diversity (π) at 0.045 ± 0.002. A decline in the effective population size from 0.05 million years ago also was observed in Thai T. aduncus through Bayesian Skyline Plots analysis. A unique set of haplotypes was identified in our samples, which may have originated from the Australian and Indian Oceans rather than the Western Pacific Ocean. These results improve our understanding of the maternal lineage of the Indo-Pacific bottlenose dolphin, which can be used for monitoring population status and establishing better conservation plans for this species in the Thai Andaman Sea. Full article

Migration schedules and the timing of other annual events (e.g., pair formation and molt) can affect the distribution of genetic diversity as much as where these events occur. The greater white-fronted goose (Anser albifrons) is a circumpolar goose species, exhibiting temporal and spatial variation of events among populations during the annual cycle. Previous range-wide genetic assessments of the nuclear genome based on eight microsatellite loci suggest a single, largely panmictic population despite up to five subspecies currently recognized based on phenotypic differences. We used double digest restriction-site associated DNA (ddRAD-seq) and mitochondrial DNA (mtDNA) sequence data to re-evaluate estimates of spatial genomic structure and to characterize how past and present processes have shaped the patterns of genetic diversity and connectivity across the Arctic and subarctic. We uncovered previously undetected inter-population differentiation with genetic clusters corresponding to sampling locales associated with current management groups. We further observed subtle genetic clustering within each management unit that can be at least partially explained by the timing and directionality of migration events along with other behaviors during the annual cycle. The Tule Goose (A. a. elgasi) and Greenland subspecies (A. a. flavirostris) showed the highest level of divergence among all sampling locales investigated. The recovery of previously undetected broad and fine-scale spatial structure suggests that the strong cultural transmission of migratory behavior restricts gene flow across portions of the species’ range. Our data further highlight the importance of re-evaluating previous assessments conducted based on a small number of highly variable genetic markers in phenotypically diverse species. Full article

A yellow, Gram-stain-negative, aerobic, non-spore-forming, motile, and rod-shaped bacterial strain designated M6^T was isolated from fully weathered granitic soil. The strain showing the highest 16S rRNA gene sequence similarity to M6^T was Sandaracinobacteroides hominis SZY PN-1^T (96.3%), the only species in the genus Sandaracinobacteroides. The average nucleotide identity and digital DNA-DNA hybridization value between these two strains were 72.6% and 18.0% respectively. Growth was inhibited by NaCl (≥0.1% (w/v)). Strain M6^T contained C_18:1ω7c (33.8%), C_14:0 2-OH (16.6%), summed feature 3 (15.8%), and C_16:0 (12.6%) as the major fatty acids. The polar lipids profile consisted of phosphatidylglycerol, phosphatidylethanolamine, an unidentified glycolipid, four unidentified phospholipids, and four unidentified lipids. The genome of strain M6^T was 3.4 Mb with 67.7% GC content. Further genomic analysis revealed a biosynthetic gene cluster for zeaxanthin, the production of which was verified by a high-resolution mass spectrum. The existence of multiple genes for aromatic ring-hydroxylating dioxygenases implies the potential ability for organic pollution controlling. The morphological, physiological, chemotaxonomic, and phylogenetic analysis clearly distinguished this strain from its phylogenetic neighbors, thus strain M6^T represents a novel species of the genus Sandaracinobacteroides, for which the name Sandaracinobacteroides saxicola sp. nov. is proposed. The type of strain is M6^T (=CGMCC 1.19164^T=NBRC 115420^T). Full article

The Sardinian population of wild boar (WB, Sus scrofa meridionalis) has evolved on this Mediterranean island since its arrival in Neolithic age. Climate and land use vary across the island; high temperatures and dryness represent limiting factors for the development and reproduction of the species. Hence, the environment can have contributed to create the morphological differences we observe today across the island and could sustain the genetic structure that has been previously observed using neutral molecular markers. We therefore searched for genomic signatures of local adaptation in a sample of Sardinian WB genotyped at almost 50 K single nucleotide polymorphisms (SNPs). Genetic structure was observed in the population separating the northwest and southwest from the east of the island, where internal substructure also emerged. We identified 49 SNPs as candidate loci involved in adaptation and 61 genes. Gene ontology enrichment analysis revealed over-representation of terms related to cell localization, motility, and adhesion, but also related to anatomical development and immunity. According to our results, the environment seems to have played a role in shaping the genetic differentiation of the Sardinian wild boar in a limited evolutionary timescale. Full article