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J. Fungi, Volume 12, Issue 5 (May 2026) – 82 articles

Cover Story (view full-size image): Candidozyma auris (Candida auris) has rapidly emerged as a healthcare-associated fungal pathogen of global concern. Multidrug-resistance is frequent, and C. auris can colonize the skin, form biofilms, and persist on healthcare-related surfaces and equipment. These traits promote environmental persistence, transmission, and outbreaks, particularly among vulnerable or critically ill patients. Environmental contamination and asymptomatic colonization may precede the recognition of clinical cases. Therefore, active environmental surveillance, accurate laboratory identification, and effective disinfection measures are essential for early detection and control. View this paper
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26 pages, 2994 KB  
Article
Fungal Communities Associated with Wooden Coffins in a Prehistoric Burial Cave
by Nantana Mills, Natasha Mills, Nakarin Suwannarach, Nuttapol Noirungsee, Jaturong Kumla, Sahutchai Inwongwan, Rujipas Yongsawas, Chanon Saksunwiriya, Varis Domethong, Rasmi Shoocongdej and Terd Disayathanoowat
J. Fungi 2026, 12(5), 380; https://doi.org/10.3390/jof12050380 - 21 May 2026
Viewed by 618
Abstract
Phi Man Long Long Rak Cave, located in Mae Hong Son Province, northern Thailand, is a prehistoric burial site containing ancient wooden coffins that have undergone biodeterioration, likely due to fungal activity. Both culture-dependent and culture-independent approaches were employed to characterize fungal communities [...] Read more.
Phi Man Long Long Rak Cave, located in Mae Hong Son Province, northern Thailand, is a prehistoric burial site containing ancient wooden coffins that have undergone biodeterioration, likely due to fungal activity. Both culture-dependent and culture-independent approaches were employed to characterize fungal communities and assess their roles in wood degradation. Culture-dependent analysis identified five Aspergillus isolates from the wooden coffins, most of which produced cellulolytic and hemicellulolytic enzymes; some isolates also produced organic acids, indicating significant degradative potential. Culture-independent analysis revealed a community dominated by Aspergillus, together with additional taxa such as Penicillium and Ceriporia that were not detected by cultivation, highlighting greater community diversity and demonstrating the complementarity of the two methods. Functional prediction indicated a predominance of saprotrophic fungi. The presence of shared dominant taxa between soil and coffin-associated substrates suggests ecological connectivity at the soil–coffin interface, although the direction of dispersal cannot be determined from the present data. All tested fungicides inhibited fungal growth, with the highest efficacy observed in the formulation containing the highest proportion of active components. Taken together, these findings provide insights into fungal biodeterioration processes and inform conservation strategies. Full article
(This article belongs to the Section Environmental and Ecological Interactions of Fungi)
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17 pages, 352 KB  
Review
Laboratory Diagnostics of Aspergillosis: Present State and Future Directions
by Rok Tomazin and Tadeja Matos
J. Fungi 2026, 12(5), 379; https://doi.org/10.3390/jof12050379 - 21 May 2026
Viewed by 756
Abstract
Aspergillosis encompasses a heterogeneous spectrum of diseases caused by filamentous fungi of the genus Aspergillus, ranging from allergic airway disorders and chronic pulmonary infection to rapidly progressive invasive disease. Aspergillus fumigatus is the predominant pathogen worldwide, although other species, including Aspergillus flavus, [...] Read more.
Aspergillosis encompasses a heterogeneous spectrum of diseases caused by filamentous fungi of the genus Aspergillus, ranging from allergic airway disorders and chronic pulmonary infection to rapidly progressive invasive disease. Aspergillus fumigatus is the predominant pathogen worldwide, although other species, including Aspergillus flavus, Aspergillus terreus and cryptic species, contribute to morbidity and may exhibit intrinsic or acquired antifungal resistance. Early and accurate laboratory diagnosis is essential for timely treatment, appropriate antifungal selection, and stewardship. Traditional culture remains foundational, enabling confirmation of viable organisms, species-level identification, and antifungal susceptibility testing, but sensitivity is limited and turnaround times are prolonged. Non-culture approaches—including galactomannan, β-D-glucan, lateral flow assays, PCR, and next-generation sequencing—enhance diagnostic sensitivity, facilitate early detection, and allow identification of resistance-associated mutations. Optimal diagnostic performance is achieved through integrated, multimodal strategies combining laboratory tests with clinical and radiological findings. In invasive disease, concurrent use of biomarkers and molecular assays improves specificity and positive predictive value, while in allergic bronchopulmonary aspergillosis, immunological markers remain central. Future directions include standardised molecular protocols, novel antigenic and host-based biomarkers, and cost-effective, risk-adapted diagnostic algorithms to refine detection, guide therapy, and improve patient outcomes. Full article
(This article belongs to the Special Issue Diagnosis of Invasive Fungal Diseases, 2nd Edition)
19 pages, 6383 KB  
Article
Establishment of a Loop-Mediated Isothermal Amplification (LAMP) Method for the Detection of Fusarium oxysporum f. sp. momordicae
by Xiongjuan Huang, Chengcheng Feng, Xixi Ju, Yuhui Huang, Xiaofeng Chen, Jiazuo Liang, Xinglian Liu, Zhendong Chen and Rukui Huang
J. Fungi 2026, 12(5), 378; https://doi.org/10.3390/jof12050378 - 20 May 2026
Viewed by 481
Abstract
Bitter gourd (Momordica charantia L.) is an important vegetable and medicinal crop in tropical/subtropical regions, but suffers severe yield losses (even total failure) from Fusarium wilt caused by Fusarium oxysporum f. sp. momordicae (Fom). There is no specific detection system [...] Read more.
Bitter gourd (Momordica charantia L.) is an important vegetable and medicinal crop in tropical/subtropical regions, but suffers severe yield losses (even total failure) from Fusarium wilt caused by Fusarium oxysporum f. sp. momordicae (Fom). There is no specific detection system available to detect this pathogen, and the methods used for other pathogens exhibit cross-reactivity and require specialized equipment. Therefore, this study developed a loop-mediated isothermal amplification (LAMP) assay for early Fom diagnosis. Initially, five sets of LAMP primers targeting the conserved regions of Fom, located within the region amplified by the FOMM-SPF/SPR PCR primers, were tested for specificity and sensitivity. In this experiment, FoM-1-2 showed optimal specificity, identifying 44 Fom strains without cross-reactivity with 10 other non-Fom species after a 60 min incubation at 64 °C. A visual readout based on a fluorescent dye (green for positive, pale orange for negative) eliminated the need for gel electrophoresis and specialized instruments. The LAMP assay was 100-fold more sensitive than conventional PCR (detection limit: 5.6 pg/μL vs. 560 pg/μL). In inoculated seedlings, LAMP detected Fom in basal stems at four days post-inoculation and top leaves at six days, whereas conventional PCR yielded faint bands in the basal stem after eight days. Moreover, LAMP enabled non-destructive detection. Thus, the present study developed a rapid, specific, and sensitive visual LAMP assay, supporting early diagnosis of bitter gourd Fusarium wilt. Full article
(This article belongs to the Section Fungi in Agriculture and Biotechnology)
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17 pages, 1033 KB  
Review
Multifunctional Roles of Autophagy in Fungi
by Aron Osakina, William J. Steinbach and Praveen R. Juvvadi
J. Fungi 2026, 12(5), 377; https://doi.org/10.3390/jof12050377 - 20 May 2026
Viewed by 609
Abstract
Autophagy, also referred to as the “self-eating machinery”, is a crucial process where organisms maintain intracellular homeostasis through recycling or degrading non-essential and damaged cellular components. It is important in numerous biological functions such as cellular differentiation, aging, nutrient sensing, stress response, tissue [...] Read more.
Autophagy, also referred to as the “self-eating machinery”, is a crucial process where organisms maintain intracellular homeostasis through recycling or degrading non-essential and damaged cellular components. It is important in numerous biological functions such as cellular differentiation, aging, nutrient sensing, stress response, tissue homeostasis, immunity, and programmed cell death. Autophagy induction occurs with the formation of a double-layered membrane structure called “autophagosome”. The autophagosome wraps damaged organelles or proteins and transports them to the vacuole or lysosome for degradation. Autophagy is beneficial to organisms, and it should be optimally regulated because elevated or decreased levels are detrimental for survival. To date, more than 40 autophagy-related genes (ATGs) have been identified in the budding yeast Saccharomyces cerevisiae, with most having homologs in fungi and higher eukaryotes. Majority of the ATGs in industrial and pathogenic fungal species have been characterized and known to play vital roles in growth, development, and virulence. In this review we provide a comprehensive overview of ATGs in various fungal species and highlight how autophagy is regulated and controls various functions in plant, human, and industrial fungal species. Full article
(This article belongs to the Section Fungal Cell Biology, Metabolism and Physiology)
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25 pages, 2205 KB  
Systematic Review
Mycofilters and the Effectiveness of Mycofiltration in the Removal of Contaminants in Water—A Systematic Review
by Sanele Michelle Mnkandla and Patricks Voua Otomo
J. Fungi 2026, 12(5), 376; https://doi.org/10.3390/jof12050376 - 18 May 2026
Viewed by 708
Abstract
Mycofiltration uses saprophytic fungi immobilised on dead organic matter to treat contaminated water. This systematic review aimed to collate literature on mycofiltration, identify water sources subjected to mycofiltration, types of fungi employed, contaminants removed, and removal efficiencies (R%). Articles written in English between [...] Read more.
Mycofiltration uses saprophytic fungi immobilised on dead organic matter to treat contaminated water. This systematic review aimed to collate literature on mycofiltration, identify water sources subjected to mycofiltration, types of fungi employed, contaminants removed, and removal efficiencies (R%). Articles written in English between 1990 and 2023 were collected from various sources, screened based on inclusion criteria, and critically appraised. Metadata were extracted, and a narrative synthesis was conducted. Forty articles representing 156 studies passed appraisal, with 116 from journal articles, 24 from theses, and 16 from reports. Synthetic stormwater and real wastewater were the most frequently mycofiltered. Fungi of the Pleurotus genus were predominantly used in creating mycofilters. Organic contaminants removed included pharmaceuticals and pesticides, with R% between 60% and 100%. E. coli was the most studied microbial contaminant, and R% of 30%, 60%, and 90% were reported. Inorganic contaminants were mostly metals with R% above 60%. Overall, contaminant removal by mycofiltration varied, but the technology remained a promising tool. Research gaps observed included a lack of standardised methods for mycofilter preparation and design and little to no assessment of mycofilter saturation. Addressing gaps could aid in increasing mycofilter efficiency and reliable upscaling of mycofiltration. Full article
(This article belongs to the Special Issue Fungi Activity on Remediation of Polluted Environments, 2nd Edition)
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10 pages, 284 KB  
Review
Pythium oligandrum Is a Type of Biocontrol Oomycete with Great Potential
by Kun Yang, Rongbo Wang, Liguang Liu, Kang An, Jitao Liu, Li Wang, Jianwei Shan, Chengchen Li, Liang Qi, Li Zheng and Xiaobo Li
J. Fungi 2026, 12(5), 375; https://doi.org/10.3390/jof12050375 - 18 May 2026
Viewed by 627
Abstract
As a non-pathogenic oomycete, Pythium oligandrum possesses unique advantages, particularly in the context of being a biological control agent. With the increasing awareness of consumer consciousness, people are paying more attention to the use of environmentally friendly strategies in plant disease prevention and [...] Read more.
As a non-pathogenic oomycete, Pythium oligandrum possesses unique advantages, particularly in the context of being a biological control agent. With the increasing awareness of consumer consciousness, people are paying more attention to the use of environmentally friendly strategies in plant disease prevention and control. Pythium oligandrum is a type of biocontrol oomycete that can be developed as a biological control agent, and it does not have adverse effects on humans in the prevention and control of plant diseases. Consequently, there is increasing scientific interest in the beneficial plant–microbe interactions mediated by P. oligandrum. Currently, the main points of focus regarding the beneficial role of P. oligandrum in plant interactions are as follows: (i) P. oligandrum can activate plant defense responses and cause plants to produce resistance, thus protecting them from disease attacks; (ii) it is a strong mycoparasite that can coil around various oomycetes and fungi, directly killing pathogenic microorganisms; (iii) in addition, it can also promote plant growth. In this paper, we will discuss the aforementioned three main features in detail. Full article
(This article belongs to the Section Fungi in Agriculture and Biotechnology)
17 pages, 12077 KB  
Article
Potential of Indonesian Marine Endophytic Fungi as Extracellular Enzymes Producers
by Mirah Afiza Nurazizah, Safrina Dyah Hardiningtyas, Muhammad Arief Budiman, Nurul Huda Abd Kadir and Kustiariyah Tarman
J. Fungi 2026, 12(5), 374; https://doi.org/10.3390/jof12050374 - 18 May 2026
Viewed by 595
Abstract
Marine endophytic fungi inhabit the internal tissues of seaweed, seagrass, and mangroves without causing harm. These fungi are known to produce extracellular enzymes, including proteases and cellulases, which play crucial roles in various biological processes and have potential applications in diverse industrial sectors. [...] Read more.
Marine endophytic fungi inhabit the internal tissues of seaweed, seagrass, and mangroves without causing harm. These fungi are known to produce extracellular enzymes, including proteases and cellulases, which play crucial roles in various biological processes and have potential applications in diverse industrial sectors. This study aimed to screen the enzymatic potential of marine endophytic fungi, identify selected isolates, and characterize their enzyme activities. A total of 20 fungal isolates were obtained, comprising 16 isolates from seaweed, three from seagrass, and one from mangrove leaves, collected from the coastal areas of the Seribu Islands (Jakarta), Sukabumi (West Java), Nusa Dua (Bali), and the Buton Islands (Southeast Sulawesi). Screening results showed that 50% of the isolates exhibited proteolytic activity on skim milk agar, while 40% demonstrated cellulolytic activity on carboxymethylcellulose (CMC) agar. Two isolates with the highest clear zone indices for protease and cellulase activity were identified as Penicillium citrinum and Fomitopsis sp., with distinct morphological characteristics including velvety colonies and filamentous hyphal structures. The specific activities of the protease and cellulase were 5475.42 ± 2724.25 U/mg protein and 620.77 ± 607.71 U/mg protein, respectively, indicating high catalytic potential. Full article
(This article belongs to the Special Issue Research and Application of Fungal Enzymes)
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14 pages, 2227 KB  
Article
Targeted Suppression of the Tomato Pathogen Alternaria alternata via Exogenous Application of Double-Stranded RNA
by Andrey R. Suprun, Stanislava A. Vinogradova, Alina A. Beresh, Natalia S. Chopenko, Alina A. Dneprovskaya, Evgeniya V. Trubetskaya, Artem Yu. Manyakhin and Konstantin V. Kiselev
J. Fungi 2026, 12(5), 373; https://doi.org/10.3390/jof12050373 - 18 May 2026
Viewed by 592
Abstract
Alternaria blight, caused by fungi of the genus Alternaria, is one of the most common and damaging diseases affecting tomatoes, leading to significant yield losses. The intensive use of chemical fungicides faces the problems of pathogen resistance development and negative environmental impacts. [...] Read more.
Alternaria blight, caused by fungi of the genus Alternaria, is one of the most common and damaging diseases affecting tomatoes, leading to significant yield losses. The intensive use of chemical fungicides faces the problems of pathogen resistance development and negative environmental impacts. This study investigated the possibility of using RNA interference technology based on exogenous double-stranded RNAs (dsRNAs) to protect tomatoes against the causal agent of early blight (EB), Alternaria alternata. Key genes of the pathogen A. alternata were selected as targets: Alt-a1 (a major allergen and virulence factor), TEF1a (translation elongation factor 1-alpha) and β-Tub (β-tubulin). Specific dsRNAs were synthesized in vitro and applied to tomato plants (Solanum lycopersicum L. cv. Micro-Tom) simultaneously with inoculation of A. alternata strain C7.24-T2-L-F1 spores. Visual assessment, measurement of chlorophyll A and B, and real-time quantitative PCR analysis showed that treatment with dsRNAs targeting the Alt-a1, TEF1a and β-Tub genes significantly suppressed infection development, reducing the amount of pathogen DNA in plant tissues by 7 to 27 times depending on the dsRNA type. The most effective was dsRNA to the Alt-a1 gene. Thus, the obtained results demonstrate the promise of spray-induced gene silencing (SIGS) as a strategy for protecting tomato plants against the pathogen A. alternata. Full article
(This article belongs to the Special Issue Plant–Fungal Interactions: Molecular and Biocontrol Perspectives)
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3 pages, 510 KB  
Editorial
Plant Fungal Diseases and Crop Protection, Second Edition
by Ofir Degani
J. Fungi 2026, 12(5), 372; https://doi.org/10.3390/jof12050372 - 18 May 2026
Viewed by 443
Abstract
Fungal pathogens constitute the largest group of plant disease agents, infecting crops through leaves, seeds, and soil, and causing substantial losses in agricultural productivity worldwide [...] Full article
(This article belongs to the Special Issue Plant Fungal Diseases and Crop Protection, 2nd Edition)
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15 pages, 2923 KB  
Article
RT-qPCR-Based Estimation of Phytophthora infestans Sporangia Using the MFS Transporter Gene PITG_13011
by Hua Zhao, Chunyue Liu, Xi Zhang, Qingfeng Qiu, Yangsheng Luo, Xiwang Ke and Biao Gu
J. Fungi 2026, 12(5), 371; https://doi.org/10.3390/jof12050371 - 17 May 2026
Viewed by 523
Abstract
Phytophthora infestans is the causal agent of late blight, one of the most destructive diseases of potato and tomato worldwide. Although qPCR-based methods are widely used to estimate pathogen biomass in infected tissues, methods for specifically assessing sporangial proliferation remain limited. In this [...] Read more.
Phytophthora infestans is the causal agent of late blight, one of the most destructive diseases of potato and tomato worldwide. Although qPCR-based methods are widely used to estimate pathogen biomass in infected tissues, methods for specifically assessing sporangial proliferation remain limited. In this study, we developed an RT-qPCR-based assay using PITG_13011, which encodes a predicted major facilitator superfamily transporter, as a sporangia-associated molecular marker in P. infestans. Among five candidate genes selected from transcriptomic data, PITG_13011 showed the strongest association with sporangia-associated samples in our validation assays. PITG_13011 transcripts were detectable from cDNA and genomic DNA derived from as few as 100 sporangia, and transcript abundance showed a strong positive correlation with sporangial number under controlled experimental conditions. In detached leaf inoculation assays, PITG_13011 transcript levels were associated with differences in sporangia-associated proliferation during infection. These results indicate that PITG_13011-based RT-qPCR can serve as a complementary molecular approach for estimating sporangia-associated proliferation of P. infestans in laboratory experiments. This method will be useful when sporangial production, rather than total pathogen biomass alone, is the parameter of interest. Full article
(This article belongs to the Special Issue Fungal Metabolomics and Genomics, 2nd Edition)
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13 pages, 2117 KB  
Article
Multilocus Phylogenetic Identification and Fruit Pathogenicity of Lasiodiplodia Isolates Obtained from Mango Branches with Dieback and Fruits with Stem-End Rot in Mexico
by Juan Manuel Tovar-Pedraza, Guillermo Estrada-Arroyo, Rafael Macedo-Arzate, Sami J. Michereff, Kamila C. Correia, Santos Gerardo Leyva-Mir, José Antonio Mora-Aguilera, Moisés Camacho-Tapia, Guillermo Márquez-Licona and Alma Rosa Solano-Báez
J. Fungi 2026, 12(5), 370; https://doi.org/10.3390/jof12050370 - 16 May 2026
Viewed by 574
Abstract
Mango (Mangifera indica L.) represents one of the most significant fruit crops cultivated across multiple regions of Mexico. In recent years, cases of stem-end rot and dieback have been observed in mango-producing areas. This research aimed to characterize the diversity of Lasiodiplodia [...] Read more.
Mango (Mangifera indica L.) represents one of the most significant fruit crops cultivated across multiple regions of Mexico. In recent years, cases of stem-end rot and dieback have been observed in mango-producing areas. This research aimed to characterize the diversity of Lasiodiplodia species associated with these symptoms, determine their geographic distribution in five Mexican states, and evaluate their pathogenicity on mango fruits. During 2014, samples exhibiting dieback and stem-end rot symptoms were collected from 27 commercial orchards located in five states, resulting in the obtention of 87 Lasiodiplodia isolates. From these, 36 representative isolates were selected and identified through phylogenetic analyses (ITS, tef1-α, tub2), employing the Maximum Likelihood and Bayesian Inference approach. Eight Lasiodiplodia species were resolved: L. brasiliense, L. laeliocattleyae, L. subglobosa, L. theobromae, L. iraniensis, L. mexicanensis, L. hyalina, and L. pseudotheobromae. Among them, L. brasiliense, L. laeliocattleyae, L. subglobosa, L. iraniensis, L. mexicanensis, and L. hyalina are reported for the first time in association with mango tissues in Mexico. Pathogenicity tests conducted on detached mango fruits using the mycelial plug inoculation method demonstrated that all species were capable of inducing necrotic lesions. However, L. laeliocattleyae and L. brasiliense exhibited the highest levels of aggressiveness, while L. mexicanensis, L. hyalina, and L. pseudotheobromae were the least aggressive. Full article
(This article belongs to the Special Issue Fungal Diseases of Fruit and Woody Plants)
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17 pages, 3309 KB  
Article
The Methyltransferase VdPRMT4 Regulates Verticillium dahliae via Regulation of Primary Metabolic Processes
by Yanqing Bi, Guoshuai Zhang, Xinyu Zhu, Yumei Su, W. G. Dilantha Fernando, Xiaofeng Su, Wenfang Guo and Yue Li
J. Fungi 2026, 12(5), 369; https://doi.org/10.3390/jof12050369 - 16 May 2026
Viewed by 601
Abstract
Cotton Verticillium wilt (VW), caused by the soil-borne fungus Verticillium dahliae (V. dahliae), is a devastating disease that poses a serious threat to sustainable cotton production worldwide. Protein methylation plays a critical role in fungal adaptation to the host environment and [...] Read more.
Cotton Verticillium wilt (VW), caused by the soil-borne fungus Verticillium dahliae (V. dahliae), is a devastating disease that poses a serious threat to sustainable cotton production worldwide. Protein methylation plays a critical role in fungal adaptation to the host environment and manipulation of plant immunity. Protein arginine methyltransferases (PRMTs) are key enzymes catalyzing arginine methylation, yet their functions in V. dahliae pathogenicity remain largely unexplored. In this study, we identified VdPRMT4 in V. dahliae through homology-based screening. qRT-PCR analysis revealed that VdPRMT4 transcript levels were significantly increased during the early stages of V. dahliae infection in cotton. HIGS assays showed that silencing VdPRMT4 markedly alleviated cotton VW symptoms and reduced fungal biomass in cotton plants. Gene knockout and complementation experiments demonstrated that deletion of VdPRMT4 did not affect hyphal growth but significantly impaired sporulation capacity and severely attenuated pathogenicity on cotton. Transcriptomic analysis further indicated that loss of VdPRMT4 profoundly affected the metabolic pathways of V. dahliae, including protein processing in the endoplasmic reticulum, purine metabolism, and glycerolipid metabolism. Collectively, this study provides the first evidence that VdPRMT4 plays a critical role in stress adaptation and pathogenicity of V. dahliae, offering new insights into fungal pathogenesis and identifying potential targets for VW control. Full article
(This article belongs to the Section Fungal Genomics, Genetics and Molecular Biology)
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10 pages, 9429 KB  
Review
Exophiala dermatitidis Eye Infection: Case Report and Literature Review
by Suzana Otašević, Marija Trenkić, Marko Stalević, Marina Ranđelović, Slavica Stojnev, Milica Đorđević, Jana Pešić Stanković, Goran Koraćević and Roberta Iatta
J. Fungi 2026, 12(5), 368; https://doi.org/10.3390/jof12050368 - 16 May 2026
Viewed by 546
Abstract
Exophiala endophthalmitis of exogenous origin is an exceptionally rare but severe ocular infection, characterized by diagnostic delays, limited therapeutic guidance, and frequently poor outcomes. Herein, we report one new case of an 80-year-old woman who presented with severe fungal keratitis progressing to endophthalmitis [...] Read more.
Exophiala endophthalmitis of exogenous origin is an exceptionally rare but severe ocular infection, characterized by diagnostic delays, limited therapeutic guidance, and frequently poor outcomes. Herein, we report one new case of an 80-year-old woman who presented with severe fungal keratitis progressing to endophthalmitis two years after an uncomplicated cataract surgery. The condition was initially misdiagnosed and treated with topical antibiotics and corticosteroids. By cultivation, microscopy, histopathological, and PCR analysis of the samples, Exophiala dermatitidis was identified as the causative agent. Despite targeted antifungal therapy with voriconazole, the disease rapidly progressed, resulting in corneal perforation and evisceration of the affected eye. The number of confirmed cases of this infection remains very limited. To address this gap, we conducted a structured review of all reported instances of exogenous Exophiala endophthalmitis, in which Exophiala dermatitidis emerged as the predominant causative species. Common predisposing factors included corneal barrier disruption, ocular surgery, diabetes mellitus, and corticosteroid use. Diagnostic confirmation was frequently delayed, and treatment outcomes varied. Amphotericin B-based regimens were associated with poor results, whereas voriconazole, particularly when combined with surgical intervention, demonstrated more favorable outcomes. Exogenous Exophiala endophthalmitis remains underrecognized, with limited evidence to guide management. This entity should be considered in postoperative or trauma-associated intraocular inflammation, and current evidence supports azole-based therapy combined with surgical intervention when indicated. Full article
(This article belongs to the Special Issue Diagnosis and Management of Human Mold Infections, 2nd Edition)
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14 pages, 3331 KB  
Article
Effects of Different Initial pH Conditions on the Antioxidant Capacity and Lipidomic Profiles of Samsoniella hepialid
by Yan Tong, Chuyu Tang, Bing Jia, Haoxu Tang, Jinxuan Yan, Yuling Li and Xiuzhang Li
J. Fungi 2026, 12(5), 367; https://doi.org/10.3390/jof12050367 - 16 May 2026
Viewed by 500
Abstract
Samsoniella hepiali produces an array of pharmacologically valuable metabolites, but how environmental pH regulates its antioxidant system and lipid metabolism during submerged fermentation remains unclear. This study aimed to investigate the effects of different initial culture pH values (pH 4, 5, 6, and [...] Read more.
Samsoniella hepiali produces an array of pharmacologically valuable metabolites, but how environmental pH regulates its antioxidant system and lipid metabolism during submerged fermentation remains unclear. This study aimed to investigate the effects of different initial culture pH values (pH 4, 5, 6, and 7) on the antioxidant capacity and lipidomic metabolism of S. hepiali. The results demonstrated that at pH 5, the activities of peroxidase (POD) and superoxide dismutase (SOD), the contents of total phenolics (TP) and flavonoids, the scavenging rates of DPPH• and •OH, and the total antioxidant capacity all peaked. Conversely, the level of glutathione (GSH) reached its maximum at pH 6 (0.69 ± 0.014 μmol/g). Lipidomic analysis identified a total of 404 lipid molecular species, mainly TG, PE, and DG. Comparative analysis among pH 4 vs. pH 5, pH 6 vs. pH 5, and pH 7 vs. pH 5 revealed 27 core DALs belonging to 11 lipid subclasses, most of which were upregulated at pH 5. KEGG pathway enrichment analysis further revealed that sphingolipid metabolism was the sole core co-enriched pathway under different pH conditions. Particularly at pH 5, key signaling lipids, such as ceramides, underwent pronounced targeted accumulation. This study elucidates the molecular adaptation mechanisms of medicinal fungi in response to pH variation from a lipidomic perspective. It provides a basis for optimizing fermentation conditions to enhance antioxidant activity and functional lipid production. Full article
(This article belongs to the Special Issue Fungal Metabolomics and Genomics, 3rd Edition)
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41 pages, 2220 KB  
Review
Mycogenic Nanomaterials: What Fungal Nanoparticles Promise and What Still Holds Them Back
by Kasun M. Thambugala, Sanduni Dabare, Asanthi Dhanusha, Imalka Munaweera, Dinushani A. Daranagama, Sukanya Haituk and Ratchadawan Cheewangkoon
J. Fungi 2026, 12(5), 366; https://doi.org/10.3390/jof12050366 - 16 May 2026
Viewed by 1043
Abstract
Mycogenic nanomaterials, nanoparticles (NPs) biosynthesized through fungal enzymatic and metabolic activity, have emerged as a compelling alternative to chemically synthesized nanomaterials, offering fundamental biocompatibility, green production conditions, and biologically functional surface coatings. Fungi, acting as natural “nanofactories,” harness reductases, oxidoreductases, secreted proteins, and [...] Read more.
Mycogenic nanomaterials, nanoparticles (NPs) biosynthesized through fungal enzymatic and metabolic activity, have emerged as a compelling alternative to chemically synthesized nanomaterials, offering fundamental biocompatibility, green production conditions, and biologically functional surface coatings. Fungi, acting as natural “nanofactories,” harness reductases, oxidoreductases, secreted proteins, and secondary metabolites to reduce metal ions into stable NPs under ambient conditions, simultaneously capping the particles with biomolecules that enhance colloidal stability, biocompatibility, and secondary biological activity. Unlike previous reviews that have addressed either biosynthesis mechanisms or applications in isolation, this review uniquely adopts a structured “Promise vs. Barrier” framework across six interconnected thematic pillars, offering the first comprehensive critical synthesis that simultaneously maps mechanistic frontiers, biodiversity gaps, and translational barriers within mycogenic nanotechnology. The present review critically examines both the extraordinary promise and the persistent barriers facing mycogenic nanotechnology across biosynthetic mechanisms, fungal biodiversity, nanomaterial portfolio expansion, biomedical applications, environmental and agricultural utility, and industrial scalability. We highlight how emerging multiomics approaches, integrating transcriptomics, proteomics, and metabolomics, are beginning to decode the molecular blueprints of fungal NP synthesis, while acknowledging that mechanistic knowledge gaps, limited genetic toolkits for non-model fungi, and the absence of standardized protocols continue to impede progress. The fungal kingdom represents a vast, underexplored reservoir of nanofactory potential, with fewer than 1% of known species evaluated to date; strategic bioprospecting using genome mining and machine learning is beginning to unlock this diversity. Mycogenic NPs demonstrate broad-spectrum antimicrobial activity against multidrug-resistant pathogens, selective anticancer activity, biosensing capacity, and applications in wound healing, sustainable agriculture, environmental remediation, and smart food packaging. However, critical deficits persist in clinical validation, long-term toxicity data, manufacturing reproducibility, and regulatory clarity. The review concludes with a tiered roadmap, spanning immediate mechanistic priorities through to long-term synthetic biology and AI-integrated commercialization, and calls for coordinated international action on standardization, reference material development, and harmonized regulatory frameworks to bridge the gap between laboratory promise and real-world application. Full article
(This article belongs to the Section Fungi in Agriculture and Biotechnology)
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4 pages, 160 KB  
Editorial
Fungal Metabolomics and Genomics: Integrating Multi-Omics to Decipher Function, Diversity, and Application
by Chengwei Liu, Jianzhao Qi and Xiuzhang Li
J. Fungi 2026, 12(5), 365; https://doi.org/10.3390/jof12050365 - 15 May 2026
Viewed by 355
Abstract
Fungi represent one of the most diverse groups of organisms on Earth, playing fundamental roles in ecosystems, agriculture, and biotechnology [...] Full article
(This article belongs to the Special Issue Fungal Metabolomics and Genomics)
23 pages, 5815 KB  
Article
Heat-Stress Induced Apoptosis: A New Biotechnological Strategy to Enhance Ganoderic Acids Production in Ganoderma lucidum
by Meng-Hsuan Lai, Ni Tien, Hsiao-Lien Yang, Jun-He Huang, Miin-Huey Lee and Bang-Jau You
J. Fungi 2026, 12(5), 364; https://doi.org/10.3390/jof12050364 - 15 May 2026
Viewed by 490
Abstract
Ganoderma lucidum is a medicinal fungus widely utilized in traditional medicine and functional foods. Its primary bioactive constituents are ganoderic acids (GAs), a group of triterpenoid compounds. While chemical-induced apoptosis has previously been shown to enhance GAs production, this study investigates the role [...] Read more.
Ganoderma lucidum is a medicinal fungus widely utilized in traditional medicine and functional foods. Its primary bioactive constituents are ganoderic acids (GAs), a group of triterpenoid compounds. While chemical-induced apoptosis has previously been shown to enhance GAs production, this study investigates the role of physical stress in this regulatory pathway. We demonstrate that heat-induced apoptosis significantly increases GAs production in G. lucidum. To determine whether apoptosis directly regulates this process, we overexpressed the human anti-apoptotic gene Bcl-2 in G. lucidum, confirming expression via RT-PCR and Western blot analysis. Upon heat-induced apoptosis, these Bcl-2 overexpression mutants exhibited increased mycelial cell viability, accompanied by reduced metacaspase activity and, notably, decreased GAs production. Furthermore, we identified a Type I metacaspase gene in G. lucidum, Glmca1, which contains highly conserved catalytic domains common across fungal species. Silencing of Glmca1 followed by heat-induced apoptosis led to results similar to Bcl-2 overexpression: enhanced cell viability, suppressed metacaspase activity, and a significant reduction in GAs yield. These findings provide compelling evidence that apoptosis functions as a critical regulatory mechanism for secondary metabolite production in G. lucidum. Consequently, modulating apoptotic pathways through physical induction offers a promising strategy for enhancing the production of bioactive ingredients in medicinal fungi. Full article
(This article belongs to the Special Issue Fungi in Focus: Fungal Enzyme and Fungal Metabolism)
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18 pages, 11274 KB  
Article
New Record of Metarhizium brunneum Infecting Banana Weevil in Peru: Implications for Biological Control
by Edwin Mondragon-Herrera, Laydy Mitsu Mena-Chacon, Santos T. Leiva-Espinoza and Angel F. Huaman-Pilco
J. Fungi 2026, 12(5), 363; https://doi.org/10.3390/jof12050363 - 15 May 2026
Viewed by 1134
Abstract
The use of entomopathogenic fungi as biological control agents has gained increasing relevance as a sustainable alternative to chemical insecticides in tropical agroecosystems. In this study, a naturally occurring isolate of Metarhizium brunneum infecting adults of Metamasius hemipterus was recovered from banana plantations [...] Read more.
The use of entomopathogenic fungi as biological control agents has gained increasing relevance as a sustainable alternative to chemical insecticides in tropical agroecosystems. In this study, a naturally occurring isolate of Metarhizium brunneum infecting adults of Metamasius hemipterus was recovered from banana plantations in the Amazonas region, Peru, and evaluated for its potential as a biological control agent. Multilocus phylogenetic analysis based on tef1α, β-tubulin, rpb1, and rpb2 sequences confirmed its taxonomic identity within the M. brunneum clade. Physiological characterization revealed variability in growth and thermal response among isolates, while conidial production differed significantly depending on the substrate. Notably, isolate PM9 exhibited the highest conidial yield on rice substrate. Pathogenicity assays demonstrated high virulence against adult weevils, with an LC50 of 2.91 × 105 conidia·mL−1 and mortality exceeding 90% at the highest concentration tested. These findings indicate that isolate PM9 combines desirable physiological and pathogenic traits for biological control. The natural occurrence of this entomopathogen in banana systems suggests ecological adaptation to local conditions and supports its potential incorporation into integrated pest management strategies, although further field-based evaluation is required. Full article
(This article belongs to the Special Issue Application of Entomopathogenic Fungi for Pest Biocontrol)
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19 pages, 5471 KB  
Article
Pelletized Growth in Cordyceps militaris Is Associated with Coordinated Cell Wall Remodeling and Stress Defense
by Na Wu, Xiaoxuan Du, Chaowei Huang, Xinru Xu, Wenke Hu, Suai Yin, Xiaoxiao Ma, Rong Shao, Kyung-Min Kim and Wei Xu
J. Fungi 2026, 12(5), 362; https://doi.org/10.3390/jof12050362 - 15 May 2026
Viewed by 472
Abstract
Morphological control in submerged fermentation is a well-established method for enhancing bioactive metabolite production in filamentous fungi. However, the molecular mechanisms linking morphology to fermentation efficiency remain insufficiently understood. In this study, supplementing 1.5% Tween 80 (P80) at the seed culture stage of [...] Read more.
Morphological control in submerged fermentation is a well-established method for enhancing bioactive metabolite production in filamentous fungi. However, the molecular mechanisms linking morphology to fermentation efficiency remain insufficiently understood. In this study, supplementing 1.5% Tween 80 (P80) at the seed culture stage of Cordyceps militaris consistently induced the formation of compact, uniform mycelial pellets. This morphological induction at the seed stage enhanced fermentation performance, increasing exopolysaccharide (EPS) titer by 71.1% and reducing the production cycle by 24 h. Transcriptomic analysis revealed that pelletized cultures exhibited transcriptional patterns associated with MAPK signaling related to cell wall integrity and upregulation of genes involved in cell wall remodeling. Additionally, pelletized cultures displayed a reduced oxidative burden and were associated with enhanced antioxidant capacity. These findings link morphology induction to cell wall remodeling and oxidative stress defense, offering a potentially scalable strategy for industrial polysaccharide production in medicinal fungi. Full article
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15 pages, 3720 KB  
Article
Functional Characterization of OTU Domain-Containing Deubiquitinases from Plant Pathogenic Fungi Reveals Distinct Immune Modulatory Mechanisms
by Sezer Akgöl, Serpil Aylin Yaşar and Fatih Kocabaş
J. Fungi 2026, 12(5), 361; https://doi.org/10.3390/jof12050361 - 14 May 2026
Viewed by 464
Abstract
Ubiquitination is a key post-translational modification regulating cellular signaling and innate immunity, and its reversal by deubiquitinases (DUBs) represents a critical mechanism exploited by pathogens for immune evasion. While ovarian tumor (OTU) domain-containing DUBs are well characterized in viral systems, their roles in [...] Read more.
Ubiquitination is a key post-translational modification regulating cellular signaling and innate immunity, and its reversal by deubiquitinases (DUBs) represents a critical mechanism exploited by pathogens for immune evasion. While ovarian tumor (OTU) domain-containing DUBs are well characterized in viral systems, their roles in fungal pathogens remain largely unexplored. In this study, we investigated two putative OTU domain-containing proteins derived from the plant pathogenic fungi Melampsora larici-populina (MlpOTU, EGG09943.1) and Taphrina deformans (TdOTU, CCG84064.1). Recombinant MlpOTU and TdOTU proteins were successfully expressed and purified from E. coli and exhibited high solubility and proper folding. Functional analyses in HEK293T cells demonstrated that both proteins significantly reduce global ubiquitination levels, confirming their deubiquitinase activity in vivo. Despite this shared enzymatic function, the two proteins displayed markedly distinct effects on host immune gene expression. MlpOTU selectively suppressed key antiviral effectors, most notably MX1, suggesting a targeted immune evasion strategy. In contrast, TdOTU induced robust upregulation of multiple immune-related genes, including type I interferons, indicating a divergent role. Neither MlpOTU nor TdOTU triggered robust apoptosis, supporting their role as modulators of host signaling rather than cytotoxic effectors. Collectively, these findings provide the first functional evidence that fungal OTU domain-containing proteins act as active deubiquitinases and reveal distinct strategies by which plant pathogens may manipulate host immune responses. This study establishes fungal OTU domains as promising targets for antifungal intervention and broadens our understanding of cross-kingdom evasion mechanisms. Full article
(This article belongs to the Section Fungal Genomics, Genetics and Molecular Biology)
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14 pages, 411 KB  
Systematic Review
Relationship Between Onychomycosis and HIV: A Systematic Review
by Samantha Cruz-López, Emiret Analy Albavera-Ramírez, Roberto Arenas, Claudia Erika Fuentes-Venado, Claudia Camelia Calzada-Mendoza, Eunice D. Farfán-García, Juan Castillo-Cruz, Edwin Chávez-Gutiérrez, Erick Martínez-Herrera and Rodolfo Pinto-Almazán
J. Fungi 2026, 12(5), 360; https://doi.org/10.3390/jof12050360 - 13 May 2026
Viewed by 443
Abstract
Background/Objectives: Onychomycosis is a fungal nail infection that may present with severe, atypical, or treatment-resistant features in people living with HIV. Despite its clinical importance, evidence regarding its epidemiology, causative agents, and relationship with immune status remains limited. This systematic review aimed to [...] Read more.
Background/Objectives: Onychomycosis is a fungal nail infection that may present with severe, atypical, or treatment-resistant features in people living with HIV. Despite its clinical importance, evidence regarding its epidemiology, causative agents, and relationship with immune status remains limited. This systematic review aimed to evaluate the association between onychomycosis and HIV, focusing on prevalence, clinical characteristics, etiologic agents, and CD4+ T lymphocyte counts at diagnosis. Methods: A systematic review was conducted following PRISMA guidelines. MEDLINE/PubMed, SciELO, Scopus, and Scilit were searched for studies published between October 2015 and July 2025 in English and Spanish. Eligible studies included case reports, case series, and observational studies involving people with HIV and confirmed onychomycosis. Data extraction was performed independently, and findings were analyzed descriptively. Results: Thirty studies comprising 1296 patients were included; 306 had detailed clinical descriptions. Most cases were reported in the Americas (85.8%) and predominantly involved male patients. CD4+ counts were available in 123 individuals; 52% had <200 cells/µL, including 18 with <50 cells/µL. Trichophyton rubrum was the most frequently identified etiologic agent. Conclusions: Onychomycosis in HIV shows etiologic diversity and commonly affects patients with advanced immunosuppression, though it may also occur with partial immune preservation. Prospective standardized studies are needed. Full article
(This article belongs to the Special Issue Clinical and Epidemiological Study of Mycoses)
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14 pages, 1890 KB  
Article
Stereospecific Antifungal Activity of Strigolactone Analogues Against Botrytis cinerea and Sclerotinia sclerotiorum
by Pingliang Huang, Ruifeng Yao and Li Chen
J. Fungi 2026, 12(5), 359; https://doi.org/10.3390/jof12050359 - 13 May 2026
Viewed by 467
Abstract
Plant hormones and their synthetic analogueues offer sustainable alternatives for crop protection, yet the direct antifungal activity of strigolactone (SL) and its analogues against necrotrophic pathogens remain largely unexplored. Here, we screened eight phytohormones and related analogues for treatments of Botrytis cinerea and [...] Read more.
Plant hormones and their synthetic analogueues offer sustainable alternatives for crop protection, yet the direct antifungal activity of strigolactone (SL) and its analogues against necrotrophic pathogens remain largely unexplored. Here, we screened eight phytohormones and related analogues for treatments of Botrytis cinerea and identified the SL analogue rac-GR24 (racemic GR24) as a concentration-dependent growth inhibitor active at low micromolar concentrations. Given the stereochemical complexity of SLs and their analogues, we evaluated multiple enantiopure isomers and found that ent-5DS and GR24ent-5DS, which differ in configuration from natural SLs, exhibited the strongest inhibitory activity. This stereospecific response was further validated using another filamentous fungus, Sclerotinia sclerotiorum, which displayed an identical susceptibility profile. Combinatorial treatments with enantiopure isomers and double-concentration rac-GR24 revealed that the antifungal effect of the racemate is primarily attributable to the GR24ent-5DS enantiomer, whereas the opposite enantiomer GR245DS is almost inactive. Collectively, our findings uncover a stereospecific response in fungal pathogens, demonstrating that B. cinerea and S. sclerotiorum respond to exogenous SL analogues in a chirally selective manner. This work establishes a stereochemically defined framework for developing enantioselective fungicidal agents with potential applications in sustainable agriculture. Full article
(This article belongs to the Section Fungal Pathogenesis and Disease Control)
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22 pages, 1843 KB  
Article
Ophidiomyces ophidiicola in Northern Pine Snakes (Pituophis m. melanoleucus) in New Jersey: Known-Aged Individuals Indicate Endemic Status, Recovery and Reinfection, and Survival at Least 8 Years Post-Infection
by Joanna Burger, Christian Jeitner, Kelly Ng, Robert T. Zappalorti, John Bunnell, Emile DeVito, David Schneider, David Burkett and Michael Gochfeld
J. Fungi 2026, 12(5), 358; https://doi.org/10.3390/jof12050358 - 13 May 2026
Viewed by 490
Abstract
Ophidiomyces ophidiicola (O. ophidiicola) causes ophidiomycosis and has deleterious effects in some North American snakes. Studies have suggested that it is endemic in some species, but most studies have been conducted on individuals of unknown age, for only a season or [...] Read more.
Ophidiomyces ophidiicola (O. ophidiicola) causes ophidiomycosis and has deleterious effects in some North American snakes. Studies have suggested that it is endemic in some species, but most studies have been conducted on individuals of unknown age, for only a season or two. This paper fills that gap by exploring prevalence of qPCR-confirmed ophidiomycosis in known-aged Northern pine snakes (Pituophis melanoleucus melanoleucus) during a six-year testing period, followed by two years of monitoring survival. Some individuals testing positive for O. ophidiicola lived for at least 8 years following initial infection, and their O. ophidiicola status could change from positive to negative and back again in successive years, while still seeming healthy. Approximately 85% were positive in at least one year, and overall positivity was 65% in the snakes. Detection frequency was 45% for ventral swabs, and only 23% for head swabs. Of 31 snakes found at least a year after first testing positive, 71% lived at least 3 years, and 23% lived 6 or more years. Females lived longer after testing positive than males, and more females changed from positive to negative than did males. These data help understand infections, recovery and re-infection in individuals, as well as survival of marked individuals, and have implications for endemism and long-term population viability of snake populations exposed to O. ophidiicola. Full article
(This article belongs to the Section Fungal Pathogenesis and Disease Control)
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20 pages, 7536 KB  
Article
Phylogeny and Taxonomy of Spider-Pathogenic Gibellula (Cordycipitaceae, Hypocreales) from the Lancang–Mekong Biodiversity Hotspot: Four New Species and Five New National Records
by Bo Tu, Hui Chen, Xu Zhang, De-Xiang Tang, Van-Minh Dao, Chanhom Loinheuang and Yao Wang
J. Fungi 2026, 12(5), 357; https://doi.org/10.3390/jof12050357 - 12 May 2026
Viewed by 606
Abstract
Gibellula (Cordycipitaceae, Hypocreales) represents a group of highly specialized obligate fungal pathogens restricted to spider hosts. Species delimitation was conducted using morphological characteristics in combination with multilocus phylogenetic analyses (nrSSU, ITS, nrLSU, tef1-α, rpb1, rpb2), and [...] Read more.
Gibellula (Cordycipitaceae, Hypocreales) represents a group of highly specialized obligate fungal pathogens restricted to spider hosts. Species delimitation was conducted using morphological characteristics in combination with multilocus phylogenetic analyses (nrSSU, ITS, nrLSU, tef1-α, rpb1, rpb2), and we recognized nine spider-associated Gibellula species from specimens collected in the Lancang–Mekong biodiversity hotspot (China, Laos, Thailand, and Vietnam). Among them, four are described as new to science: Gibellula longiconidiophora sp. nov., G. mekongensis sp. nov., G. ovorum sp. nov., and G. pseudopilosa sp. nov. The other five species represent new national distributional records: G. yunnanensis (new to Laos), G. pseudopigmentosa (new to Thailand), G. trimorpha (new to Vietnam), G. penicillioides (new to Laos), and G. scorpioides (new to China and Laos). Phylogenetic analyses resolved these taxa into well-supported lineages. Notably, G. ovorum is a rare example of a Gibellula species parasitizing spider egg sacs rather than adult spiders, revealing an unusual substrate shift. Morphological distinctions among the new species include differences in conidiophore length, synnematal development, conidial size, and sporulation patterns. Detailed descriptions, illustrations, and taxonomic comparisons are provided. This study significantly expands the known diversity and geographic distribution of Gibellula in the Lancang–Mekong region and underscores the importance of integrative taxonomy for uncovering hidden diversity in spider-pathogenic fungi. Full article
(This article belongs to the Special Issue Ascomycota: Diversity, Taxonomy and Phylogeny, 4th Edition)
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16 pages, 2533 KB  
Article
Dual Inoculations of Dark Septate Endophytic and Ericoid Mycorrhizal Fungi Improved the Drought Resistance of Blueberry (Vaccinium corymbosum L.) Seedlings
by Xiaolan Guo, Jinbin Hu, Yaqin Wang, Lingda Zeng, Dun Wang, Yu Cao and Delu Wang
J. Fungi 2026, 12(5), 356; https://doi.org/10.3390/jof12050356 - 12 May 2026
Viewed by 520
Abstract
Dark septate endophytes (DSE) and ericoid mycorrhizal fungi (ERMF) are employed to augment the abiotic stress resistance of fruits. However, their potential functions in enhancing the drought resistance of blueberry, an economically important fruit, remain unclear. Thus, this study aims to identify optimal [...] Read more.
Dark septate endophytes (DSE) and ericoid mycorrhizal fungi (ERMF) are employed to augment the abiotic stress resistance of fruits. However, their potential functions in enhancing the drought resistance of blueberry, an economically important fruit, remain unclear. Thus, this study aims to identify optimal inoculation combinations to enhance the drought resistance of blueberry seedlings. Specifically, the effects of single and dual inoculations with DSE (Cladosporium cladosporioides, D79) and ERMF (Oidiodendron citrinum, N12) on seedling physiology and metabolism were explored under varying drought conditions. The results showed that dual inoculation significantly improved leaf physiological characteristics. Under severe drought stress, the 1:2 DSE:ERMF ratio (D1N2) notably increased leaf relative water content (RWC) and reduced electrolyte leakage by up to 42.1% compared with the non-inoculated control. Dual inoculation also significantly decreased malondialdehyde (MDA) content, with the smallest increase observed in D1N2. Regarding antioxidant enzymes, dual inoculation sustained higher superoxide dismutase (SOD) activity under moderate drought and minimized the decline in SOD activity under severe drought (the lowest decrease was 36.4% in D1N2 versus 56.7% in CK). Moreover, the antioxidant losses under drought stress were reduced by upregulating various metabolic processes, especially the biosynthesis of phenylalanine, tyrosine, and tryptophan. A comprehensive evaluation suggested that inoculation with a 1:2 mixture of DSE and ERMF most effectively improved blueberry drought resistance, primarily by enhancing water and metabolite supply and stimulating the antioxidant defenses. Full article
(This article belongs to the Section Fungi in Agriculture and Biotechnology)
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29 pages, 9116 KB  
Article
Taxonomy and Phylogeny of Lepiota Sect. Stenosporae (Verrucosporaceae) from Northeast China, with Six New Species and One New Record
by Xian-Yan Zhou and Tolgor Bau
J. Fungi 2026, 12(5), 355; https://doi.org/10.3390/jof12050355 - 12 May 2026
Viewed by 555
Abstract
Lepiota sect. Stenosporae is characterized by a trichodermal or cutis-like pileus covering and spurred basidiospores. Although macroscopic similarities among its members complicate field identification, species can be delimited by combining multi-locus (ITS, nrLSU, rpb2, and tef1-α) phylogenetic analyses with distinct micro-morphological [...] Read more.
Lepiota sect. Stenosporae is characterized by a trichodermal or cutis-like pileus covering and spurred basidiospores. Although macroscopic similarities among its members complicate field identification, species can be delimited by combining multi-locus (ITS, nrLSU, rpb2, and tef1-α) phylogenetic analyses with distinct micro-morphological features. Using this integrative approach, we investigated specimens of sect. Stenosporae collected from Northeast China. A total of 12 species were successfully delimited, including six species new to science (Lepiota dolichospora, L. hongshiensis, L. jilinensis, L. microstenospora, L. sinocastanea, and L. sirupa) and one new record for China (L. grangei). Comprehensive morphological descriptions and line-drawing illustrations of microscopic features are provided for all recognized taxa. These findings expand the known species diversity of Lepiota in China and contribute morphological and molecular data for further systematic studies of this fungal group. Full article
(This article belongs to the Section Fungal Evolution, Biodiversity and Systematics)
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17 pages, 19228 KB  
Article
A Transcriptomic Study of the Effects of Tea Tree Essential Oil on the Pathogenicity of Candida albicans
by Yutao Zhou, Jiahao Xu, Chang Su, Weina Wu and Fengping Yi
J. Fungi 2026, 12(5), 354; https://doi.org/10.3390/jof12050354 - 12 May 2026
Viewed by 539
Abstract
Candida albicans is a common opportunistic pathogen. Long-term use of azole antifungals faces challenges like resistance, necessitating novel agents. Tea tree oil (TTO), a natural broad-spectrum antimicrobial, shows promise, but its molecular mechanisms, particularly concerning novel cell death pathways, require clarification. This study [...] Read more.
Candida albicans is a common opportunistic pathogen. Long-term use of azole antifungals faces challenges like resistance, necessitating novel agents. Tea tree oil (TTO), a natural broad-spectrum antimicrobial, shows promise, but its molecular mechanisms, particularly concerning novel cell death pathways, require clarification. This study comprehensively evaluated the antifungal mechanism of TTO against C. albicans using transcriptomics. Antifungal susceptibility assays were conducted to assess the effects of TTO and its components (4-terpineol, terpenes, and γ-pinene) on the growth of C. albicans hyphae and biofilms. Fluorescent labeling and biochemical analysis were employed to detect ferroptosis markers. Transcriptomic results indicate that TTO induces 423 differentially expressed genes and systematically inhibits the development of C. albicans hyphae through mechanisms such as oxidative stress, iron homeostasis disruption, disruption of cell wall integrity, and interference with ergosterol metabolism. Notably, the significant enrichment of redox enzyme activity and iron ion binding functions, along with changes in the glutathione metabolic pathway, suggest that ferroptosis may be involved in this process. Subsequent studies revealed that the compound 4-pinene most effectively inhibits the pathogenicity of C. albicans by suppressing its adhesion, hyphae formation, and biofilm formation, whereas terpinene induces the accumulation of reactive oxygen species (ROS) and increases lipid peroxidation in C. albicans; furthermore, following treatment with an iron-mediated apoptosis inhibitor, terpinene enhances the viability of the treated C. albicans cells. Full article
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23 pages, 9336 KB  
Article
Effects of Legume–Grass Mixture Composition and Seeding Ratio on Plant Community Traits, Soil Physicochemical Properties, and Soil Fungal Diversity
by Jianyue Li, Jien Xi, Yuanwu Yang, Wei Wang, Chengti Xu, Jinling Ma, Xixi Yao and Haodong Liu
J. Fungi 2026, 12(5), 353; https://doi.org/10.3390/jof12050353 - 11 May 2026
Viewed by 631
Abstract
Legume–grass mixtures are widely used to improve productivity and soil quality in alpine grasslands; however, their effects on soil fungal communities and the underlying mechanisms remain unclear. In this study, a two-factor field experiment (species richness (three, four, and five species) × legume–grass [...] Read more.
Legume–grass mixtures are widely used to improve productivity and soil quality in alpine grasslands; however, their effects on soil fungal communities and the underlying mechanisms remain unclear. In this study, a two-factor field experiment (species richness (three, four, and five species) × legume–grass ratio (4:6, 3:7 and 2:8)) was conducted in an alpine artificial grassland on the Qinghai–Tibetan Plateau. Soil fungal communities were assessed using high-throughput sequencing combined with multivariate analyses. The results showed that Ascomycota, Mortierellomycota, and Basidiomycota were the dominant fungal phyla. Both species composition and seeding ratio significantly influenced fungal community structure and α-diversity primarily through indirect pathways mediated by plant community characteristics and soil properties. Plant height and soil total phosphorus (TP) were identified as key drivers of fungal α-diversity. Specifically, the four-species mixture (Z2) at a 3:7 legume–grass ratio resulted in relatively higher and more stable aboveground biomass and improved soil nutrient status, whereas increasing species richness to five species did not further enhance these benefits. Overall, our findings indicate that optimizing species composition and legume–grass ratio, rather than simply increasing species richness, is more effective for regulating soil fungal diversity and ecosystem function. Full article
(This article belongs to the Special Issue Endophytic Fungi–Plant Interactions and Ecology)
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19 pages, 6180 KB  
Article
Chromosome-Level Genome Assembly of Morchella sextelata Reveals Its Early Divergence and Adaptive Evolution
by Linhai Hong, Qi Fan, Nan Tao, Peng Wang, Ping Liu, Jing Leng, Chunxin Yao and Qinghong Liu
J. Fungi 2026, 12(5), 352; https://doi.org/10.3390/jof12050352 - 10 May 2026
Viewed by 724
Abstract
This study presents a high-quality chromosome-level genome assembly of Morchella sextelata (54.64 Mb, 26 pseudochromosomes) and systematically characterizes its genomic and evolutionary features. Phylogenetic analysis indicates that M. sextelata diverged early within the Morchella genus (~14.2 million years ago) and underwent substantial genomic [...] Read more.
This study presents a high-quality chromosome-level genome assembly of Morchella sextelata (54.64 Mb, 26 pseudochromosomes) and systematically characterizes its genomic and evolutionary features. Phylogenetic analysis indicates that M. sextelata diverged early within the Morchella genus (~14.2 million years ago) and underwent substantial genomic remodeling, with 1124 expanded and 1961 contracted gene families. Enrichment analysis of rapidly expanded gene families highlights two prominent functional themes: genes associated with small molecule/ion binding and secondary metabolite biosynthesis, and genes linked to the Fanconi anemia pathway and DNA repair/recombination. Notably, 56.96% of the COG-annotated M. sextelata-specific genes encode retrotransposon-related proteins, and this enrichment coincides with the expansion of DNA repair systems—a pattern reminiscent of the “transposon domestication” model. Functional genomic analyses further reveal that the glycoside hydrolase system is dominated by GH5, GH43, and GH3 families, suggesting a predicted capacity for plant cell wall polysaccharide degradation, while 12 biosynthetic gene clusters indicate genetic potential for terpenoid and non-ribosomal peptide biosynthesis. These findings provide a valuable genomic resource for M. sextelata and offer new insights into the role of transposable element mediated remodeling in fungal genome evolution. Full article
(This article belongs to the Section Fungal Genomics, Genetics and Molecular Biology)
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13 pages, 949 KB  
Article
Preliminary  Validation of a Colorimetric Loop-Mediated Isothermal Amplification (c-LAMP) Assay for Detection of Pythium insidiosum in Clinical Specimens
by Thanawat Sridapan, Chalisa Jaturapaktrarak, Thidarat Rujirawat, Wilasinee Konsue, Pattarana Sae-Chew, Chompoonek Yurayart and Theerapong Krajaejun
J. Fungi 2026, 12(5), 351; https://doi.org/10.3390/jof12050351 - 9 May 2026
Viewed by 894
Abstract
Pythiosis is an emerging infectious disease caused by the oomycete Pythium insidiosum, affecting humans and animals primarily in subtropical and tropical regions. The pathogen is commonly found in swampy environments, and exposure can lead to diverse clinical manifestations. In humans, ocular and [...] Read more.
Pythiosis is an emerging infectious disease caused by the oomycete Pythium insidiosum, affecting humans and animals primarily in subtropical and tropical regions. The pathogen is commonly found in swampy environments, and exposure can lead to diverse clinical manifestations. In humans, ocular and vascular infections predominate, whereas in animals, cutaneous/subcutaneous or gastrointestinal disease is more common. Medical therapy is frequently ineffective, and many patients require extensive surgical intervention. Advanced cases may progress to fatal outcomes. Therefore, early and accurate detection is critical for improving clinical management. This study evaluated a colorimetric loop-mediated isothermal amplification (c-LAMP) assay compared with an established multiplex PCR (m-PCR) assay for the detection of P. insidiosum in clinical specimens from animals with and without pythiosis. When tested on 47 frozen tissue samples, c-LAMP demonstrated superior diagnostic performance, with markedly greater sensitivity (83.9% vs. 41.9%), higher accuracy (78.7% vs. 61.7%), and a shorter turnaround time (65 vs. 180 min). However, c-LAMP yielded five false-positive results, likely due to nonspecific amplification or contamination. Improved sample-handling practices increased the specificity from 68.8% to 93.8%. In contrast, m-PCR showed perfect specificity (100.0%) but substantially lower sensitivity, resulting in a high false-negative rate. In conclusion, these preliminary findings suggest that c-LAMP is a promising rapid screening tool for suspected pythiosis, particularly in resource-limited settings. Nevertheless, confirmatory testing remains necessary for positive or equivocal c-LAMP results. Full article
(This article belongs to the Section Fungal Pathogenesis and Disease Control)
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