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Proteomes, Volume 14, Issue 4

2026 December - 8 articles

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Articles (8)

  • Editorial
  • Open Access
24 Views
3 Pages

Plant Genomics and Proteomics

  • Setsuko Komatsu and
  • Pingfang Yang

6 November 2026

Advances in genomics and proteomics have greatly expanded our understanding of plant biology by providing comprehensive insights into the molecular mechanisms underlying growth, development, and adaptation to environmental challenges [...]

(This article belongs to the Special Issue Plant Genomics and Proteomics)
  • Article
  • Open Access
170 Views
22 Pages

Proteomics of Human Skin Aging: Molecular and Translational Limits

  • Niki Tertipi,
  • Eleni Sfyri,
  • Vasiliki-Sofia Grech,
  • Eleni Andreou and ,
  • Vassiliki Kefala and
  • Efstathios Rallis
  • + 1 author+ 0 author

3 November 2026

Human skin aging comprises changes in extracellular matrix, epidermal differentiation and barrier function, redox balance, protein homeostasis, inflammation, and senescence. This critical narrative review uses structured descriptive charting of publi...

  • Article
  • Open Access
566 Views
31 Pages

30 October 2026

Background: Sex differences influence venous thromboembolism (VTE) risk and clinical course, but corresponding differences in circulating proteomic profiles among individuals with established VTE remain incompletely characterized. We investigated fem...

(This article belongs to the Special Issue Clinical Proteomics: Unravelling Drug and Disease Mechanisms (Fifth Edition))
  • Review
  • Open Access
272 Views
26 Pages

28 October 2026

Protein post-translational modifications (PTMs) greatly expand proteome complexity by regulating protein activity, localization, stability, and intermolecular interactions. While advances in mass spectrometry have enabled the large-scale characteriza...

(This article belongs to the Section Proteomics Technology and Methodology Development)
  • Article
  • Open Access
455 Views
27 Pages

Integrated Top-Down Proteomics for Comprehensive Proteome Analysis at the Proteoform Level

  • Luke A. Farrell,
  • Breyer Woodland,
  • Aiden Brennan,
  • Jens R. Coorssen and ,
  • Matthew B. O’Rourke and
  • Matthew P. Padula
  • + 1 author+ 0 author

Background: Proteoforms are the critical functional species that drive biological processes. However, conventional proteogenomic (“shotgun”) analyses discard relevant proteoform-level information through bulk protein digestion. This study...

(This article belongs to the Section Proteoform Analysis (Top-Down and Bottom-Up))
  • Article
  • Open Access
337 Views
22 Pages

Background: Lung adenocarcinoma (LUAD) shows marked heterogeneity in its immune microenvironment, which may contribute to differences in disease-free survival (DFS) and clinical outcome. Although current LUAD classifications are largely based on geno...

(This article belongs to the Section Proteome Bioinformatics)
  • Review
  • Open Access
557 Views
19 Pages

29 September 2026

Classical liquid chromatography–tandem mass spectrometry (LC-MS/MS) remains a cornerstone of proteomics, but deep profiling of complex biofluids is constrained by the extreme dynamic range of protein abundance and low sample throughput. Emergin...

(This article belongs to the Topic Multi-Omics in Precision Medicine)
  • Article
  • Open Access
481 Views
23 Pages

In Silico Phosphoproteomic Profiling of the MAP3K3 Signaling Network

  • Jetna John,
  • Suhail Subair,
  • Leona Dcunha,
  • Althaf Mahin and ,
  • Megha Madhusudhanan,
  • Levin John,
  • Athira Perunelly Gopalakrishnan,
  • Mukhtar Ahmed and
  • Rajesh Raju
  • + 4 authors+ 0 author

28 September 2026

Background: Mitogen-activated protein kinase kinase kinase 3 (MAP3K3) is a serine/threonine kinase that exhibits oncogenic activity in various cancers. Despite the established role of MAP3K3 in signal transduction, its phosphosignaling landscape, inc...

(This article belongs to the Section Proteome Bioinformatics)
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Proteomes - ISSN 2227-7382