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Microbiology Research, Volume 16, Issue 7

2025 July - 31 articles

Cover Story: This research explored microbiome-based approaches to counter multidrug-resistant Salmonella Heidelberg (MDR SH) colonization in turkeys through the use of antibiotic alternatives. Twelve-week-old commercial turkeys, challenged with MDR SH, were allocated to five treatment groups: negative control, Salmonella control, Lactobacillus supplementation, Propionibacterium freudenreichii supplementation, or a live attenuated Salmonella Typhimurium vaccine. Shotgun metagenomic analysis showed that all interventions enriched lactic acid-producing bacteria in the cecum and enhanced metabolic pathways and microbial networks associated with gut health. These results emphasize the potential of microbiome-based interventions for promoting gut resilience in poultry colonized with MDR pathogens and lessening the need for antibiotics in production. View this paper
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Articles (31)

  • Article
  • Open Access
1 Citations
1,477 Views
16 Pages

Effects of Glomus iranicum Inoculation on Growth and Nutrient Uptake in Potatoes Associated with Broad Beans Under Greenhouse Conditions

  • Duglas Lenin Contreras-Pino,
  • Samuel Pizarro,
  • Patricia Verastegui-Martinez,
  • Richard Solórzano-Acosta and
  • Edilson J. Requena-Rojas

The rising global demand for food, including potatoes, necessitates increased crop production. To achieve higher yields, farmers frequently depend on regular applications of nitrogen and phosphate fertilizers. As people seek more environmentally frie...

  • Article
  • Open Access
1,384 Views
14 Pages

Microbiota of the Whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) by 16S rDNA Illumina Sequencing

  • Afef Najjari,
  • Chahnez Naccache,
  • Nour Abdelkefi,
  • Salma Djebbi,
  • Amira Souii,
  • Brahim Chermiti,
  • Mourad Elloumi and
  • Maha Mezghani Khemakhem

Bemisia tabaci (Aleyrodidae family) is one of the most damaging pests of numerous crops worldwide. Insecticides, namely pyrethroids and organophosphates, have long been the primary control tools against this pest, resulting in several resistance case...

  • Article
  • Open Access
1 Citations
1,701 Views
15 Pages

Phosphorus-solubilizing fungi represent a viable alternative to traditional fertilizers for use in coffee cultivation. The aim of this work was to select fungal consortia with a high phosphorus-solubilizing capacity for application to three varieties...

  • Review
  • Open Access
3 Citations
10,316 Views
27 Pages

Sourdough Fermentation and Gluten Reduction: A Biotechnological Approach for Gluten-Related Disorders

  • Ricardo H. Hernández-Figueroa,
  • Aurelio López-Malo and
  • Emma Mani-López

Sourdough fermentation has emerged as a promising biotechnological approach to reducing gluten content and modifying gluten proteins in wheat-based products. This review assesses the current scientific literature on the enzymatic degradation and hydr...

  • Article
  • Open Access
1 Citations
1,449 Views
13 Pages

Sfm Fimbriae Play an Important Role in the Pathogenicity of Escherichia coli CE129

  • Yang Yang,
  • Mingliang Chen,
  • Zixin Han,
  • Congrui Zhu,
  • Ziyan Wu,
  • Junpeng Li and
  • Guoqiang Zhu

Avian pathogenic Escherichia coli (APEC) is highly infective in poultry, causing significant economic losses to the poultry industry. As an extraintestinal pathogenic strain, adherence is a critical step in the infection. The functions of several adh...

  • Article
  • Open Access
1,217 Views
13 Pages

Comparative Evaluation of Recombinant Chlamydia abortus and Chlamydia trachomatis Major Outer Membrane Proteins for Diagnosing Human Chlamydial Infection

  • Fernando M. Guerra-Infante,
  • María J. de Haro-Cruz,
  • Marcela López-Hurtado,
  • Miguel A. De la Rosa-Ramos,
  • Efrén Díaz-Aparicio and
  • Beatriz Arellano-Reynoso

Chlamydia trachomatis infection is a public health problem. Serological tests can determine the disease burden and serve as a biomarker for identifying patients with infertility due to tubal obstruction. However, cross-reactions between chlamydial sp...

  • Review
  • Open Access
2 Citations
2,163 Views
16 Pages

Intestinal Microeukaryotes in Fish: A Concise Review of an Underexplored Component of the Microbiota

  • Jesús Salvador Olivier Guirado-Flores,
  • Estefanía Garibay-Valdez,
  • Diana Medina-Félix,
  • Francisco Vargas-Albores,
  • Luis Rafael Martínez-Córdova,
  • Yuniel Mendez-Martínez and
  • Marcel Martínez-Porchas

The intestinal microbiota of fish is predominantly composed of prokaryotic microorganisms, with research historically focused on bacteria. In contrast, the role of microeukaryotic organisms in the fish gut remains largely unexplored. This review synt...

  • Review
  • Open Access
2 Citations
3,583 Views
16 Pages

Beyond Fish Pathogens: A Comprehensive Overview of Aeromonas salmonicida

  • Xiaotong Qin,
  • Zhongduo Li,
  • Jinglan Guo,
  • Feng Bai and
  • Xiaodong Ling

Aeromonas salmonicida is an age-old fish pathogen widely distributed in seawater and freshwater environments that causes significant economic losses to the global aquaculture industry. Genetic mutations and the emergence of thermophilic strains are f...

  • Article
  • Open Access
1 Citations
2,269 Views
12 Pages

Bacteremia Outbreak Due to Achromobacter xylosoxidans in Hospitalized COVID-19 Patients

  • Magdalini Tsekoura,
  • Georgios Petridis,
  • Konstantinos Koutsouflianiotis,
  • Styliani Pappa,
  • Anna Papa and
  • Konstantina Kontopoulou

Background: Hospitalized COVID-19 patients are particularly vulnerable to secondary bacterial infections, which can significantly worsen clinical outcomes. The aim of the study was to identify the cause of bacteremia in a group of hospitalized COVID-...

  • Article
  • Open Access
2 Citations
1,822 Views
17 Pages

Helicobacter pylori, which colonizes the human gastric mucosa, uses a cluster of polar, sheathed flagella to swim across the mucous layer of the stomach. The function and biogenesis of the H. pylori flagellar sheath are poorly understood. Cardiolipin...

  • Perspective
  • Open Access
2 Citations
4,238 Views
18 Pages

Virus-First Theory Revisited: Bridging RNP-World and Cellular Life

  • Francisco Prosdocimi and
  • Savio Torres de Farias

The virus-first theory presents a model in which viral lineages emerged before cells. This proposal aims to give the theory greater relevance by offering a plausible evolutionary framework that explains both (i) the origin of viruses from prebiotic c...

  • Article
  • Open Access
677 Views
17 Pages

Soil Prokaryotic Diversity Responds to Seasonality in Dehesas, Modulated by Tree Identity and Canopy Effect

  • José Manjón-Cabeza,
  • Mercedes Ibáñez,
  • María José Leiva,
  • Cristina Chocarro,
  • Anders Lanzén,
  • Lur Epelde and
  • Maria Teresa Sebastià

Dehesas are mosaics of open grassland and standalone trees that are diversity reservoirs. However, they have recently faced abandonment and intensification, being replaced by plantations of fast-growing trees or subject to encroachment. Following a c...

  • Article
  • Open Access
3 Citations
1,980 Views
15 Pages

Comprehensive Analysis of Etiological Agents and Drug Resistance Patterns in Ventilator-Associated Pneumonia

  • Harendra K. Thakur,
  • Bansidhar Tarai,
  • Aradhana Bhargava,
  • Pankaj Soni,
  • Anup Kumar Ojha,
  • Sudhakar Kancharla,
  • Prachetha Kolli,
  • Gowtham Mandadapu and
  • Manoj Kumar Jena

Ventilator-associated pneumonia (VAP) develops in patients who stay on mechanical ventilation for more than 48 h. In the presence of causative pathogens, the patient develops clinical signs such as purulent tracheal discharge, fever, and respiratory...

  • Article
  • Open Access
1,675 Views
19 Pages

Microbial Biocontrol Agents Engineer Plant Biometrics and Host Response Against Xanthomonas oryzae pv. oryzae in Rice

  • Popy Bora,
  • Sanjay Kumar Chetia,
  • Anwesha Sharma,
  • Shenaz Sultana Ahmed,
  • Pranamika Sharma,
  • Ashok Bhattacharyya,
  • Rupam Borgohain,
  • Mrinal Saikia,
  • Parinda Barua and
  • Arunima Bharali
  • + 10 authors

Plant-beneficial microbes are a perennial ally in an agroecosystems, providing multiple benefits to crop plants. The present study explored the potential of two microbial biocontrol agents (MBCAs), viz., Trichoderma asperellum and Pseudomonas fluores...

  • Article
  • Open Access
2,273 Views
13 Pages

Acaricidal Activity of Biosurfactants Produced by Serratia ureilytica on Tetranychus urticae and Their Compatibility with the Predatory Mite Amblyseius swirskii

  • Arnoldo Wong-Villareal,
  • Esaú Ruiz-Sánchez,
  • Marcos Cua-Basulto,
  • Saúl Espinosa-Zaragoza,
  • Avel A. González-Sánchez,
  • Ernesto Ramos-Carbajal,
  • Cristian Góngora-Gamboa,
  • René Garruña-Hernández,
  • Rodrigo Romero-Tirado and
  • Erika P. Pinson-Rincón
  • + 1 author

This study evaluated the acaricidal effects of biosurfactants produced by Serratia ureilytica against the two-spotted spider mite Tetranychus urticae and their compatibility with the predatory mite Ambliseus swirski. The biosurfactants were obtained...

  • Article
  • Open Access
1 Citations
1,634 Views
16 Pages

Morinda citrifolia Essential Oil in the Control of Banana Anthracnose: Impacts on Phytotoxicity, Preventive and Curative Effects and Fruit Quality

  • Maysa C. Santos,
  • Luis O. Viteri,
  • Paulo R. Fernandes,
  • Rosilene C. Carvalho,
  • Manuel A. Gonzalez,
  • Osmany M. Herrera,
  • Pedro R. Osório,
  • Dalmarcia S. C. Mourão,
  • Sabrina H. Araujo and
  • Gil R. Santos
  • + 7 authors

Bananas, one of the most widely consumed tropical fruits in the world, are susceptible to attack by the anthracnose fungus Colletotrichum musae during the post-harvest period. Currently, fungus control is generally based on the use of chemical produc...

  • Article
  • Open Access
2,242 Views
10 Pages

Epidemiology and Molecular Identification of Dermatophytes: Focus on the Detection of the Emerging Species Trichophyton indotineae in Northern Italy

  • Valentina Lepera,
  • Gabriella Tocci,
  • Giorgia Palladini,
  • Marco Enrico Giovanni Arosio,
  • Claudio Farina,
  • Giuliana Lo Cascio and
  • on behalf of the Medical Mycology Committee (CoSM)—Italian Association of Clinical Microbiology (AMCLI)

Background: Trichophyton indotineae, a new emerging pathogen according to the WHO, is known to cause severe forms of tinea. Given that traditional identification methods rely on morphological characteristics, and the morphological distinctions a...

  • Communication
  • Open Access
966 Views
11 Pages

The Nosocomial Transmission of Carbapenem-Resistant Gram-Negative Bacteria in a Hospital in Baoding City, China

  • Shengnan Liao,
  • Wei Su,
  • Tianjiao Li,
  • Zeyang Li,
  • Zihan Pei,
  • Jie Zhang and
  • Wenjuan Yin

Background: The global rise of multidrug-resistant Gram-negative bacteria, particularly non-fermenting species and carbapenemase-producing Enterobacteriaceae, poses a significant challenge to hospital infection control. Methods: In this study, a tota...

  • Communication
  • Open Access
1,222 Views
11 Pages

Transcriptomic Analysis of Macrophages Infected with Mycobacterium smegmatis

  • Hong Sun,
  • Yue Hou,
  • Wenzhao Xu,
  • Wenjing Wang,
  • Na Tian,
  • Dingyi Liu and
  • Zhaogang Sun

Mycobacterium tuberculosis (MTB) can cause serious infectious diseases. MTB is retained in the macrophages of an organism, activating the immune response or evading the immune response through other mechanisms. Mycobacterium smegmatis (M. smeg) has t...

  • Article
  • Open Access
1,117 Views
20 Pages

Occurrence of Philaenus spumarius in Xylella fastidiosa Demarcated Zones of Northern Portugal

  • Talita Loureiro,
  • Luís Serra,
  • Ângela Martins,
  • Isabel Cortez and
  • Patrícia Poeta

The introduction of non-native species like Xylella fastidiosa to new environments can lead to potentially catastrophic ecological and economic repercussions. This work comprehended the prospection phase (insect sampling and submission of samples to...

  • Article
  • Open Access
2,703 Views
14 Pages

The COVID-19 pandemic prompted widespread adoption of intensified hand hygiene practices, raising concerns about their medium-term impact on the skin microbiome. This study investigates alterations in the hand microbiome of healthy adults during the...

  • Article
  • Open Access
1 Citations
972 Views
18 Pages

The TOR Regulatory Mechanism Controls the Metabolism of Nitrate and the Fermentation Activity in the Yeast Dekkera bruxellensis GDB 248

  • Karolini Miranda,
  • Beatriz Câmara de Melo,
  • Gilberto Henriques Teles,
  • Irina Charlot Peña-Moreno,
  • Rafael Barros de Souza and
  • Marcos Antonio de Morais

Dekkera bruxellensis is already known for its great biotechnological potential, part of this due to the ability to assimilate nitrate during fermentation. Despite the previous works on nitrogen metabolism in this yeast, especially regarding nitrate a...

  • Article
  • Open Access
1,495 Views
14 Pages

Insights into the Thriving of Bacillus megaterium and Rhodotorula mucilaginosa in Mining Areas: Their Adaptation and Tolerance Under Extreme Levels of Cu and Mn

  • Alfonso Álvarez-Villa,
  • Maribel Plascencia-Jatomea,
  • Kadiya Calderón,
  • Katiushka Arévalo-Niño,
  • Guadalupe López-Avilés and
  • Francisco Javier Almendariz-Tapia

Understanding microbial adaptation and tolerance based on the cellular concentration and biosorption capacity provides critical insights for evaluating microbial performance under heavy metal stress, which is essential for selecting efficient strains...

  • Article
  • Open Access
1,021 Views
12 Pages

Microbiological Profile and Resistance Patterns in Periprosthetic Joint Infections: A Regional Multicenter Study in Spain

  • Lucia Henriquez,
  • Ander Uribarri,
  • Iñaki Beguiristain,
  • Ignacio Sancho,
  • Carmen Ezpeleta Baquedano and
  • Maria Eugenia Portillo

Due to the significant number of microbiologically negative periprosthetic joint infections (PJIs), understanding the trend in etiology and resistance patterns is essential for the correct management of these infections. Currently, few studies have b...

  • Article
  • Open Access
1,637 Views
29 Pages

Endophytic Microbiome Is a Unique Repository of Bio-Foes Against Toxigenic Fungi Harming Peanut Productivity

  • Nagwa I. M. Helal,
  • Mona H. Badawi,
  • Abeer M. El-Hadidy,
  • Mohamed K. M. Agha,
  • Ahmed Abou-Shady and
  • Mohamed Fayez

The major objective was to investigate the protective capabilities of endophytic bacterial strains isolated from a number of medicinal plant species towards Aspergillus spp. secured from the internal tissues of fungi-infected peanuts. Among 32 fungal...

  • Article
  • Open Access
954 Views
14 Pages

Characterization and Expression Analysis of the Sterol C-5 Desaturase Gene PcERG3 in the Mycobiont of the Lichen Peltigera canina Under Abiotic Stresses

  • Moatasem A. Swid,
  • Milana V. Koulintchenko,
  • Alfred O. Onele,
  • Ilya Y. Leksin,
  • Daniya F. Rakhmatullina,
  • Ekaterina I. Galeeva,
  • Julia N. Valitova,
  • Farida V. Minibayeva and
  • Richard P. Beckett

Lichens, symbiotic organisms with a high tolerance to harsh environments, possess a greater diversity of sterols than other organisms. Sterols are involved in maintaining membrane integrity, hormone biosynthesis, and signal transduction. (1) Backgrou...

  • Article
  • Open Access
2,460 Views
13 Pages

Antibacterial In Vitro Properties of Silver Sulfadiazine in Combination with Tris-EDTA and N-Acetylcysteine Against Pseudomonas aeruginosa Isolates from Dogs with Suppurative Otitis

  • Ioanna Papadogiannaki,
  • Rosario Cerundolo,
  • Jennifer Plant,
  • Elizabeth Villiers,
  • Jenny Littler,
  • Anika Wisniewska and
  • Panagiotis Sgardelis

Pseudomonas aeruginosa otitis is common in dogs and antibiotic-resistant strains are often isolated. We are unaware of reports evaluating the combination of silver sulfadiazine (SSD) with a biofilm disruptor solution containing Tris-EDTA (tromethamin...

  • Article
  • Open Access
2 Citations
1,639 Views
11 Pages

Many rural communities in Malawi use groundwater from boreholes and shallow wells for drinking and cooking with limited or no treatment because it is considered as a safe source of water. The contamination of groundwater sources by antimicrobial resi...

  • Article
  • Open Access
3 Citations
2,070 Views
26 Pages

Beneficial Cecal Microbiome Modulation in Turkeys Exposed to Probiotics and Vaccine After Multidrug-Resistant Salmonella Heidelberg Challenge

  • Dhananjai Muringattu Prabhakaran,
  • Anup Kollanoor Johny,
  • Divek V. T. Nair,
  • Shijinaraj Manjankattil,
  • Timothy J. Johnson,
  • Sally Noll and
  • Kent M. Reed

Salmonella Heidelberg (SH) is a major serotype of foodborne Salmonella associated with turkeys. Understanding the effect of antibiotic alternatives (AAs) on the cecal microbiome of turkeys challenged with Salmonella could inform the development of mi...

  • Review
  • Open Access
2 Citations
8,966 Views
48 Pages

New Antibiotics for Lower Respiratory Tract Infections

  • Despoina Papageorgiou,
  • Maria Gavatha,
  • Dimitrios Efthymiou,
  • Eleni Polyzou,
  • Aristotelis Tsiakalos and
  • Karolina Akinosoglou

Respiratory tract infections are frequently encountered in clinical practice. The growing incidence of antimicrobial resistance among the causative pathogens exerts sustained pressure on the existing therapeutic options. The emergence of antimicrobia...

  • Article
  • Open Access
1,659 Views
19 Pages

In Vitro Evaluation of a Gel Formulation with Postbiotics and Prebiotics Against Pathogenic Microorganisms Present in the Microbiota of Psoriatic Skin

  • Nadine Gonçalves Mascarenhas,
  • Vânia Rodrigues Leite-Silva,
  • Márcio Adriano Andréo,
  • Newton Andréo-Filho and
  • Patricia Santos Lopes

Psoriasis is a chronic, non-contagious, immune-mediated inflammatory skin disease. Although current treatments help manage the condition, many present limitations that affect patient adherence, particularly topical therapies. Given that the skin micr...

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Microbiol. Res. - ISSN 2036-7481