Advances in Microbial Genomics in the AMR Field
A special issue of Microorganisms (ISSN 2076-2607). This special issue belongs to the section "Antimicrobial Agents and Resistance".
Deadline for manuscript submissions: 28 February 2026 | Viewed by 21
Special Issue Editors
Interests: RNA-seq; fungal defense response; antifungal activity compounds
Special Issues, Collections and Topics in MDPI journals
Interests: microbial genomics; antimicrobial resistance; molecular microbiology
Special Issue Information
Dear Colleagues,
The global dissemination of antimicrobial resistance (AMR) is among the most serious challenges to public health, food production, and ecological integrity. In recent years, the integration of microbial genomics and high-throughput sequencing has transformed our ability to detect, monitor, and predict resistance patterns across ecosystems. Genomic sciences are rapidly enhancing our understanding of microbial resistance mechanisms, the evolution of AMR in pathogens, and the emergence of novel resistance pathways under selective pressure. Additionally, advances in bioinformatics, artificial intelligence, and functional genomics are providing new opportunities for targeted intervention and therapeutic innovation. Phage therapy, CRISPR-based tools, and genome-informed surveillance strategies represent promising alternatives to conventional antibiotics. At the same time, international collaborative platforms and databases are enabling real-time global monitoring and data sharing, representing key elements for effective AMR control under a One Health approach. Despite these advances, gaps remain in translating genomic data into actionable insights, especially in low-resource settings, where AMR surveillance is often limited.
This Special Issue of Microorganisms aims to gather original research and review articles that present recent advances in the genomics of antimicrobial resistance (AMR), including novel approaches for its study, monitoring, and control. We welcome contributions that explore new technologies, analytical methods, and applications of microbial genomic data across clinical, agricultural, and environmental contexts.
The scope of this Special Issue includes, but is not limited to, innovations in AMR surveillance, the application of CRISPR technologies and phages in AMR control, AI-based genomic analysis, the development of global platforms and databases for AMR research, and international collaborative strategies aligned with the One Health framework.
Prof. Dr. Rosalba Troncoso-Rojas
Guest Editor
Dr. María Elena Báez-Flores
Guest Editor Assistant
Manuscript Submission Information
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Keywords
- antimicrobial resistance (AMR)
- microbial genomics
- AMR genomic surveillance
- CRISPR-Cas systems and AMR
- phage therapy in AMR
- One Health framework and AMR
- artificial intelligence in AMR
- AMR monitoring tools
- machine learning in AMR
- bioinformatics for AMR study
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