Bacterial Biofilm Formation and Eradication

A special issue of Microorganisms (ISSN 2076-2607). This special issue belongs to the section "Biofilm".

Deadline for manuscript submissions: closed (30 November 2023) | Viewed by 27426

Special Issue Editors


E-Mail Website
Guest Editor
Department of Microbiology & Immunology, Center for Surgical Infections and Biofilms, Drexel University, Philadelphia, PA 19102, USA
Interests: bacterial biofilms; horizontal gene transfer; biofilm models; optogenetics; light/phage/plasma therapy of biofilms; SMART fluids and nanotechnologies in biofilm; 3D modeling; anti-biofouling materials

E-Mail Website
Guest Editor
Department of Microbiology & Immunology, Center for Surgical Infections and Biofilms, Drexel University, Philadelphia, PA 19102, USA
Interests: chronic bacterial pathogenesis; development of anti-biofilm drugs; human disease; susceptibility and performance gene mapping and cloning

Special Issue Information

Dear Colleagues,

Bacterial biofilms are probably the oldest multicellular structures on Earth. It has been more than half a century since Bill Costerton started biofilm research, but new questions arise every day: What is really a biofilm? How do we grow bacterial biofilms? How do we study processes occurring inside a biofilm? Why are biofilm bacteria much more antibiotic resistant, and how can they be killed? How do we stop the spread of antibiotic resistances within biofilms? How do we prevent biofilm formation and remove biofilms from surfaces? How do we treat biofilm-related chronic diseases? etc.

With this Special Issue, we would like to offer you the opportunity to share your ideas and research and answer some of these intriguing questions. We look forward to your submissions, which will make this Special Issue of Microorganisms a success.

Kind regards

Dr. Jarosław E. Król
Prof. Dr. Garth Ehrlich
Guest Editors

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 100 words) can be sent to the Editorial Office for announcement on this website.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Microorganisms is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • model biofilms
  • horizontal gene transfer in biofilms
  • new promising anti-biofilm therapies
  • new antibiofilm materials

Published Papers (7 papers)

Order results
Result details
Select all
Export citation of selected articles as:

Research

Jump to: Review, Other

14 pages, 2515 KiB  
Article
The Role of Chlorine in the Formation and Development of Tap Water Biofilms under Different Flow Regimes
by Erifyli Tsagkari and William Sloan
Microorganisms 2023, 11(11), 2680; https://doi.org/10.3390/microorganisms11112680 - 31 Oct 2023
Cited by 1 | Viewed by 1149
Abstract
Water companies make efforts to reduce the risk of microbial contamination in drinking water. A widely used strategy is to introduce chlorine into the drinking water distribution system (DWDS). A subtle potential risk is that non-lethal chlorine residuals may select for chlorine resistant [...] Read more.
Water companies make efforts to reduce the risk of microbial contamination in drinking water. A widely used strategy is to introduce chlorine into the drinking water distribution system (DWDS). A subtle potential risk is that non-lethal chlorine residuals may select for chlorine resistant species in the biofilms that reside in DWDS. Here, we quantify the thickness, density, and coverage of naturally occurring multi-species biofilms grown on slides in tap water with and without chlorine, using fluorescence microscopy. We then place the slides in an annular rotating reactor and expose them to fluid-wall shears, which are redolent of those on pipe walls in DWDS. We found that biofilms in chlorine experiment were thicker, denser and with higher coverage than in non-chlorine conditions under all flow regimes and during incubation. This suggests that the formation and development of biofilms was promoted by chlorine. Surprisingly, for both chlorinated and non-chlorinated conditions, biofilm thickness, density and coverage were all positively correlated with shear stress. More differences were detected in biofilms under the different flow regimes in non-chlorine than in chlorine experiments. This suggests a more robust biofilm under chlorine conditions. While this might imply less mobilization of biofilms in high shear events in pipe networks, it might also provide refuge from chlorine residuals for pathogens. Full article
(This article belongs to the Special Issue Bacterial Biofilm Formation and Eradication)
Show Figures

Figure 1

12 pages, 2280 KiB  
Article
Upregulation of ica Operon Governs Biofilm Formation by a Coagulase-Negative Staphylococcus caprae
by Hilla Oknin, Yulia Kroupitski, Moshe Shemesh and Shlomo Blum
Microorganisms 2023, 11(6), 1533; https://doi.org/10.3390/microorganisms11061533 - 09 Jun 2023
Cited by 1 | Viewed by 1254
Abstract
Staphylococcus caprae is a Gram-positive, coagulase-negative staphylococci (CoNS), which appears as commensal in the skin, as well as a prevalent mastitis pathogen of goats. Occasionally, it is also associated with infections in humans. Biofilm formation has been identified as a putative virulence factor [...] Read more.
Staphylococcus caprae is a Gram-positive, coagulase-negative staphylococci (CoNS), which appears as commensal in the skin, as well as a prevalent mastitis pathogen of goats. Occasionally, it is also associated with infections in humans. Biofilm formation has been identified as a putative virulence factor in S. caprae. Biofilms are multicellular communities protected by a self-produced extracellular matrix (ECM), which facilitates the resistance of bacterial cells to antimicrobial treatments. The ECM is constructed by exopolysaccharides, including the major exopolysaccharide—polysaccharide intercellular adhesion (PIA), regulated by the ica operon in Staphylococcus species. The aim of this study was to characterize the expression of the ica operon in relation to biofilm formation in S. caprae. Results showed that within a few hours of growth, S. caprae could adhere to polystyrene surfaces, start to accumulate, and form biofilm. Peak biofilm biomass and maturation were reached after 48 h, followed by a reduction in biomass after 72 h. Confocal laser scanning microscopy showed the expression of matrix-associated proteins and polysaccharides at various time points. The expression dynamics of the ica operon were investigated using real-time reverse transcriptase PCR (RT)-qPCR, which showed elevated expression during the early stages of biofilm formation and subsequent downregulation throughout the biofilm aging process. In conclusion, our results show that the ica operon is essential in regulating biofilm formation in S. caprae, similar to other Staphylococcus species. Furthermore, the robustness of the observed biofilm phenotype could account for the successful intramammary colonization and may explain disease persistence caused by this pathogenic bacterium. Full article
(This article belongs to the Special Issue Bacterial Biofilm Formation and Eradication)
Show Figures

Figure 1

20 pages, 3659 KiB  
Article
Using SMART Magnetic Fluids and Gels for Prevention and Destruction of Bacterial Biofilms
by Jarosƚaw E. Król and Garth D. Ehrlich
Microorganisms 2023, 11(6), 1515; https://doi.org/10.3390/microorganisms11061515 - 07 Jun 2023
Viewed by 1248
Abstract
Biofouling is a major problem in all natural and artificial settings where solid surfaces meet liquids in the presence of living microorganisms. Microbes attach to the surface and form a multidimensional slime that protects them from unfavorable environments. These structures, known as biofilms, [...] Read more.
Biofouling is a major problem in all natural and artificial settings where solid surfaces meet liquids in the presence of living microorganisms. Microbes attach to the surface and form a multidimensional slime that protects them from unfavorable environments. These structures, known as biofilms, are detrimental and very hard to remove. Here, we used SMART magnetic fluids [ferrofluids (FFs), magnetorheological fluids (MRFs), and ferrogels (FGs) containing iron oxide nano/microparticles] and magnetic fields to remove bacterial biofilms from culture tubes, glass slides, multiwell plates, flow cells, and catheters. We compared the ability of different SMART fluids to remove biofilms and found that commercially available, as well as homemade, FFs, MRFs, and FGs can successfully remove biofilm more efficiently than traditional mechanical methods, especially from textured surfaces. In tested conditions, SMARTFs reduced bacterial biofilms by five orders of magnitude. The ability to remove biofilm increased with the amount of magnetic particles; therefore, MRFs, FG, and homemade FFs with high amounts of iron oxide were the most efficient. We showed also that SMART fluid deposition can protect a surface from bacterial attachment and biofilm formation. Possible applications of these technologies are discussed. Full article
(This article belongs to the Special Issue Bacterial Biofilm Formation and Eradication)
Show Figures

Figure 1

Review

Jump to: Research, Other

32 pages, 2572 KiB  
Review
Microbial Biofilm: A Review on Formation, Infection, Antibiotic Resistance, Control Measures, and Innovative Treatment
by Satish Sharma, James Mohler, Supriya D. Mahajan, Stanley A. Schwartz, Liana Bruggemann and Ravikumar Aalinkeel
Microorganisms 2023, 11(6), 1614; https://doi.org/10.3390/microorganisms11061614 - 19 Jun 2023
Cited by 49 | Viewed by 15779
Abstract
Biofilm is complex and consists of bacterial colonies that reside in an exopolysaccharide matrix that attaches to foreign surfaces in a living organism. Biofilm frequently leads to nosocomial, chronic infections in clinical settings. Since the bacteria in the biofilm have developed antibiotic resistance, [...] Read more.
Biofilm is complex and consists of bacterial colonies that reside in an exopolysaccharide matrix that attaches to foreign surfaces in a living organism. Biofilm frequently leads to nosocomial, chronic infections in clinical settings. Since the bacteria in the biofilm have developed antibiotic resistance, using antibiotics alone to treat infections brought on by biofilm is ineffective. This review provides a succinct summary of the theories behind the composition of, formation of, and drug-resistant infections attributed to biofilm and cutting-edge curative approaches to counteract and treat biofilm. The high frequency of medical device-induced infections due to biofilm warrants the application of innovative technologies to manage the complexities presented by biofilm. Full article
(This article belongs to the Special Issue Bacterial Biofilm Formation and Eradication)
Show Figures

Figure 1

34 pages, 1801 KiB  
Review
Development of Antifouling Strategies for Marine Applications
by Maria João Romeu and Filipe Mergulhão
Microorganisms 2023, 11(6), 1568; https://doi.org/10.3390/microorganisms11061568 - 13 Jun 2023
Cited by 8 | Viewed by 4220
Abstract
Marine biofouling is an undeniable challenge for aquatic systems since it is responsible for several environmental and ecological problems and economic losses. Several strategies have been developed to mitigate fouling-related issues in marine environments, including developing marine coatings using nanotechnology and biomimetic models, [...] Read more.
Marine biofouling is an undeniable challenge for aquatic systems since it is responsible for several environmental and ecological problems and economic losses. Several strategies have been developed to mitigate fouling-related issues in marine environments, including developing marine coatings using nanotechnology and biomimetic models, and incorporating natural compounds, peptides, bacteriophages, or specific enzymes on surfaces. The advantages and limitations of these strategies are discussed in this review, and the development of novel surfaces and coatings is highlighted. The performance of these novel antibiofilm coatings is currently tested by in vitro experiments, which should try to mimic real conditions in the best way, and/or by in situ tests through the immersion of surfaces in marine environments. Both forms present their advantages and limitations, and these factors should be considered when the performance of a novel marine coating requires evaluation and validation. Despite all the advances and improvements against marine biofouling, progress toward an ideal operational strategy has been slow given the increasingly demanding regulatory requirements. Recent developments in self-polishing copolymers and fouling-release coatings have yielded promising results which set the basis for the development of more efficient and eco-friendly antifouling strategies. Full article
(This article belongs to the Special Issue Bacterial Biofilm Formation and Eradication)
Show Figures

Figure 1

15 pages, 711 KiB  
Review
Pernicious Attitude of Microbial Biofilms in Agri-Farm Industries: Acquisitions and Challenges of Existing Antibiofilm Approaches
by Sazzad Hossen Toushik, Anamika Roy, Mohaimanul Alam, Umma Habiba Rahman, Nikash Kanti Nath, Shamsun Nahar, Bidyut Matubber, Md Jamal Uddin and Pantu Kumar Roy
Microorganisms 2022, 10(12), 2348; https://doi.org/10.3390/microorganisms10122348 - 28 Nov 2022
Cited by 9 | Viewed by 2303
Abstract
Biofilm is a complex matrix made up of extracellular polysaccharides, DNA, and proteins that protect bacteria against physical, chemical, and biological stresses and allow them to survive in harsh environments. Safe and healthy foods are mandatory for saving lives. However, foods can be [...] Read more.
Biofilm is a complex matrix made up of extracellular polysaccharides, DNA, and proteins that protect bacteria against physical, chemical, and biological stresses and allow them to survive in harsh environments. Safe and healthy foods are mandatory for saving lives. However, foods can be contaminated by pathogenic microorganisms at any stage from farm to fork. The contaminated foods allow pathogenic microorganisms to form biofilms and convert the foods into stigmatized poison for consumers. Biofilm formation by pathogenic microorganisms in agri-farm industries is still poorly understood and intricate to control. In biofilms, pathogenic bacteria are dwelling in a complex manner and share their genetic and physicochemical properties making them resistant to common antimicrobial agents. Therefore, finding the appropriate antibiofilm approaches is necessary to inhibit and eradicate the mature biofilms from foods and food processing surfaces. Advanced studies have already established several emerging antibiofilm approaches including plant- and microbe-derived biological agents, and they proved their efficacy against a broad-spectrum of foodborne pathogens. This review investigates the pathogenic biofilm-associated problems in agri-farm industries, potential remedies, and finding the solution to overcome the current challenges of antibiofilm approaches. Full article
(This article belongs to the Special Issue Bacterial Biofilm Formation and Eradication)
Show Figures

Graphical abstract

Other

Jump to: Research, Review

20 pages, 1719 KiB  
Systematic Review
TiO2 Nanocomposite Coatings and Inactivation of Carbapenemase-Producing Klebsiella Pneumoniae Biofilm—Opportunities and Challenges
by Alina-Simona Bereanu, Bogdan Ioan Vintilă, Rareș Bereanu, Ioana Roxana Codru, Adrian Hașegan, Ciprian Olteanu, Vicențiu Săceleanu and Mihai Sava
Microorganisms 2024, 12(4), 684; https://doi.org/10.3390/microorganisms12040684 - 28 Mar 2024
Viewed by 607
Abstract
The worldwide increase of multidrug-resistant Gram-negative bacteria is a global threat. The emergence and global spread of Klebsiella pneumoniae carbapenemase- (KPC-) producing Klebsiella pneumoniae represent a particular concern. This pathogen has increased resistance and abilities to persist in human reservoirs, in hospital environments, [...] Read more.
The worldwide increase of multidrug-resistant Gram-negative bacteria is a global threat. The emergence and global spread of Klebsiella pneumoniae carbapenemase- (KPC-) producing Klebsiella pneumoniae represent a particular concern. This pathogen has increased resistance and abilities to persist in human reservoirs, in hospital environments, on medical devices, and to generate biofilms. Mortality related to this microorganism is high among immunosuppressed oncological patients and those with multiple hospitalizations and an extended stay in intensive care. There is a severe threat posed by the ability of biofilms to grow and resist antibiotics. Various nanotechnology-based strategies have been studied and developed to prevent and combat serious health problems caused by biofilm infections. The aim of this review was to evaluate the implications of nanotechnology in eradicating biofilms with KPC-producing Klebsiella pneumoniae, one of the bacteria most frequently associated with nosocomial infections in intensive care units, including in our department, and to highlight studies presenting the potential applicability of TiO2 nanocomposite materials in hospital practice. We also described the frequency of the presence of bacterial biofilms on medical surfaces, devices, and equipment. TiO2 nanocomposite coatings are one of the best long-term options for antimicrobial efficacy due to their biocompatibility, stability, corrosion resistance, and low cost; they find their applicability in hospital practice due to their critical antimicrobial role for surfaces and orthopedic and dental implants. The International Agency for Research on Cancer has recently classified titanium dioxide nanoparticles (TiO2 NPs) as possibly carcinogenic. Currently, there is an interest in the ecological, non-toxic synthesis of TiO2 nanoparticles via biological methods. Biogenic, non-toxic nanoparticles have remarkable properties due to their biocompatibility, stability, and size. Few studies have mentioned the use of nanoparticle-coated surfaces as antibiofilm agents. A literature review was performed to identify publications related to KPC-producing Klebsiella pneumoniae biofilms and antimicrobial TiO2 photocatalytic nanocomposite coatings. There are few reviews on the antibacterial and antibiofilm applications of TiO2 photocatalytic nanocomposite coatings. TiO2 nanoparticles demonstrated marked antibiofilm activity, but being nano in size, these nanoparticles can penetrate cell membranes and may initiate cellular toxicity and genotoxicity. Biogenic TiO2 nanoparticles obtained via green, ecological technology have less applicability but are actively investigated. Full article
(This article belongs to the Special Issue Bacterial Biofilm Formation and Eradication)
Show Figures

Figure 1

Back to TopTop