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Fishes

Fishes is an international, peer-reviewed, scientific, open access journal covering fishes and aquatic animals research, and is published monthly online by MDPI.
The Iberian Society of Ichthyology (SIBIC) and Brazilian Society of Aquaculture and Aquatic Biology (Aquabio) are affiliated with Fishes and their members receive a discount on the article processing charges.
Quartile Ranking JCR - Q1 (Marine and Freshwater Biology)

All Articles (2,417)

Understanding connectivity between populations is key to identifying hotspots of diversity, dispersal sinks and sources, and effective management units for natural resources. Multi-species connectivity seeks to overcome species-specific idiosyncrasies to identify shared patterns that are most critical to spatial management. The linear Hawaiian archipelago provides an excellent platform to assess multi-species connectivity patterns, with shared boundaries to gene flow identified across a majority of the 41 coral reef species surveyed to date. Here, we evaluate genome-scale data by comparing consistency and resolution to previous connectivity studies using far fewer loci. We used pool-seq to genotype 22,503–232,730 single nucleotide polymorphisms per species (625,215 SNPs total) from the same individuals published in previous studies of two fishes, two corals, and two lobsters. Additionally, one coral species (Pocillopora meandrina) without previous archipelago-wide population genetic data was included. With greater statistical power, most genetic differences between pairwise comparisons of islands were significant (250 of 308), consistent with the most recent larval dispersal models for the Hawaiian Archipelago. These data reveal significant differentiation at a finer scale than previously reported using single-marker studies, yet did not overturn any of the conclusions or management implications drawn from previous studies. We confirm that population genomic datasets are consistent with previously reported patterns of multispecies connectivity but add a finer layer of population resolution that is pertinent to management.

5 December 2025

Summary of multispecies connectivity patterns previously reported for the Hawaiian Archipelago. Barriers to dispersal are indicated by red-orange rectangles labeled by the study that proposed each one. Longer rectangles indicate uncertainty in the exact location of the barrier. Toonen et al. [33] and Selkoe et al. [36] are based on reviews of empirical genetic data, while Wren et al. [35] is based on oceanographic dispersal modeling. Land and reef color are scaled by depth, with land elevation scaled in greens (islands) and water depth scaled in blues (atolls). The thin black line represents the 1000 m bathymetric isoline surrounding the islands and atolls. Site codes based on modern English names: Kure (KURE), Midway (MID), Pearl and Hermes (PH), Lisianski (LIS), Laysan (LAY), Maro Reef (MARO), Gardner Pinnacles (GAR), French Frigate Shoals (FFS), Necker (NEC), Nihoa (NIH), Kauaʻi (KAU), Oʻahu (OAHU), Molokaʻi (MOL), Lānaʻi (LAN), Maui (MAUI), and Hawaiʻi (HAW).

White croaker (Pennahia argentata) is an ecologically and economically relevant fish species targeted by demersal trawls using diamond-mesh codends at fishing grounds in China, Japan, and Korea. However, the stock has been overexploited, and the capture of undersized individuals is of concern. Further, diamond-mesh codends are known to have varying mesh shape due to the fact that the opening angle in them varies along the codend and during the fishing process. Therefore, to fully understand the effect of mesh size and opening angle on the size selectivity of white croaker, experimental fishing trials and fall-through trials were conducted. By combining the results from these trials, a model was constructed to predict the effect of mesh size and mesh opening angle on size selectivity of white croaker. The predicted size selectivity results for white croaker fitted well with those from the sea trial experiments, which enabled us to use the model established to predict the size selectivity of diamond-mesh codends with a mesh size ranging from 15 to 90 mm and the effect on the exploitation pattern of the species in the fishery by changing the codend mesh size.

4 December 2025

Fishing gears and fishing vessel in the sea trials. (a) is the trawl rigged in the starboard derrick while (b) shows the whole trawling operation.

Non-Genomic Cortisol Signaling Regulates Early Myogenic Gene Expression in Rainbow Trout Skeletal Muscle

  • Consuelo Figueroa,
  • Rodrigo Zuloaga and
  • Giorgia Daniela Ugarte
  • + 4 authors

Glucocorticoids are key regulators of vertebrate physiology, orchestrating metabolic, immune, and developmental processes that enable adaptation to stress. In teleosts, cortisol is the primary glucocorticoid, acting through classical genomic pathways and rapid non-genomic mechanisms. Although genomic signaling has been widely characterized, non-genomic actions remain poorly understood in skeletal muscle, a tissue of both biological and economic importance. In this study, we examined the effects of cortisol and its membrane-impermeable analog, cortisol-BSA, on rainbow trout (Oncorhynchus mykiss) skeletal muscle under in vivo and in vitro conditions. Transcript analysis demonstrated that cortisol and cortisol-BSA rapidly induced pax3 (2.28 ± 0.22- and 2.48 ± 0.45-fold change, respectively) and myf5 expression (3.03 ± 0.47- and 2.31 ± 0.29-fold change, respectively) at 1 h, whereas prolonged cortisol and cortisol-BSA exposure resulted in their downregulation (0.34 ± 0.07- and 0.38 ± 0.14-fold change, respectively). In cultured myotubes, cortisol-BSA activated protein kinase A (PKA) (2.24 ± 0.25-fold change) and enhanced phosphorylation of its downstream target CREB (3.2 ± 0.21-fold change) in a time-dependent manner; these effects were abolished by the PKA inhibitor H89. Moreover, inhibition of PKA signaling suppressed cortisol-BSA–induced pax3 and myf5 expression (1.31 ± 0.28-fold change and 1.89 ± 0.28-fold change, respectively). Together, these findings provide the first mechanistic evidence that non-genomic cortisol signaling regulates the PKA–CREB axis in fish skeletal muscle, promoting the early transcriptional activation of promyogenic factors. This work underscores the complementary role of rapid cortisol actions in fine-tuning myogenic responses under acute stress, offering new perspectives on muscle plasticity in teleosts.

4 December 2025

Expression of pax3 (a) and myf5 (b) in rainbow trout treated in vivo with cortisol or cortisol-BSA. Relative expression was normalized against the expression of fau as reference gene. The results are expressed as a means ± SEM (n = 6). * Indicates significant differences (p-value < 0.05) between vehicle and cortisol group. # Indicates significant differences (p-value < 0.05) between BSA and Cortisol-BSA group. Differences among groups were analyzed by one-way ANOVA followed by Tukey’s post hoc test for multiple comparisons.

Age and Growth of Greater Amberjack (Seriola dumerili) in the Gulf of America

  • Debra J. Murie,
  • Daryl C. Parkyn and
  • Geoffrey H. Smith
  • + 7 authors

Greater amberjack (Seriola dumerili) are large reef fish important in fisheries in the southeastern USA, with the Gulf of America stock unsustainably harvested over most of the past two decades. Its age-based stock assessment and recovery plan depend on age and growth information. In this study, 7658 greater amberjack were sampled from the west coast of Florida and off Alabama, Mississippi, and Louisiana in the Gulf from 1991 to 2018. Fish were aged using cross-sectioned sagittal otoliths, with accompanying data on their length, sex, location (state), and type of fishery. Overall, the greater amberjack that were landed in the recreational and commercial fisheries were between 2 and 19 years of age, with the majority between 3 and 5 years old (>80%), and were primarily caught using hook-and-line gear (95%). Sex- and state-specific growth differences were evident based on von Bertalanffy growth models, with females significantly larger at age than males in both Florida and Louisiana (which included Mississippi and Alabama due to low sample size), and females in Louisiana larger at age than females in Florida. Sex ratios in the recreational catches of Florida and Louisiana were skewed towards females (>1.5 female per male), especially for fish ≥1000 mm fork length (>2.3 female per male). Accounting for sex-specific and region-specific growth differences may, in part, help to explain the notably high variability in the overall growth model for greater amberjack in the Gulf.

4 December 2025

Cross-sectioned otoliths of greater amberjack showing (A) young fish with a dark core area followed by two opaque (white dots) and two translucent zones (edge code = 3). Fish was captured on 17 October 2015, and was therefore assigned to age class two; and (B) otolith from an old fish showing the blackened area along the sulcus with ten annuli (white dots) and an edge code = 1. Fish was captured on 24 January 2004, and was therefore assigned to age class ten. Scale bar = 0.2 mm. Photographs were taken under a Leitz Laborlux S compound microscope (Leica Microsystems, Boston, MA, USA) using a MicroPublisher 5.0 RTV digital camera (QImaging, Surrey, BC, Canada).

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Fishes - ISSN 2410-3888