Structure and Roles of Dynein in Cellular Processes

A special issue of Cells (ISSN 2073-4409). This special issue belongs to the section "Cellular Biophysics".

Deadline for manuscript submissions: closed (31 December 2023) | Viewed by 2420

Special Issue Editors

Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA
Interests: biochemistry; biophysics; cilia; cytoskeleton; dyneins; flagella; image processing, computer-assisted; microscopy, electron; microscopy, fluorescence; microtubules; molecular biology; nervous system diseases; protein conformation; signal processing, computer-assisted; tomography; protein structure, tertiary; cryoelectron microscopy; imaging, three-dimensional; axoneme; axonemal dyneins; machine learning

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Guest Editor
Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA
Interests: biochemistry; biophysics; cilia; cytoskeleton; dyneins

Special Issue Information

Dear Colleagues,

Dynein is a microtubule-based motor protein responsible for intracellular cargo transport and cell motility. Cytoplasmic dynein-1, a ~1.5-MDa complex, moves diverse cellular cargos from the plus ends of microtubules to their minus ends. Its cargos include many essential membrane-bound organelles, ribonucleoprotein particles, and aggregated proteins. A fully activated dynein transport machine requires the formation of a tripartite complex, consisting of dynein-1, the dynactin complex, and an adaptor protein. Dynein-mediated cargo transport is a highly regulated cellular process in time and space, which involves the participation of many different cofactors and adaptors. Due to the many fundamentally important cellular roles of dynein-1, a large number of human diseases are linked to dynein-1 mutations. Furthermore, during the evolution, myriads of viruses have evolved to ‘hitchhike’ the dynein-1-mediated intracellular transport to facilitate their translocation, assembly, and replication in the host cells.

In addition to dynein-1, nearly all other dyneins specifically localize and function in cilia (flagella), including dynein-2 for retrograde intraciliary transport and axonemal dyneins that drive ciliary motility. Defects in ciliary structures and functions lead to a large group of diseases collectively termed ciliopathies. Most of the reported cases are attributed to the mutations of ciliary dyneins and abnormal regulation of dynein activity.

Through the joint efforts from many research labs since the discovery of dynein in the 1960s, our understanding of dynein’s overall structures and roles in various cellular activities has been significantly improved. Nevertheless, the detailed mechanisms of the highly dynamic intracellular transport and ciliary beating, the roles of various dynein cofactors during these processes, and their implications in human diseases are still poorly understood.

This Special Issue aims to highlight new findings and perspectives regarding dynein’s roles in diverse cellular activities, mechanistic understanding of dynein-mediated cargo transport and ciliary motility, regulation of dynein activities, and their connections to human diseases. 

The topics of this Special Issue will include but are not limited to the following themes:

  • Dynein’s roles in intracellular/intraflagellar transport and ciliary motility;
  • Dynein structures and mechanisms;
  • Dynein assembly and pre-assembly;
  • Dynein cofactors and their roles;
  • Regulation of dynein activity;
  • Dynein-mediated intracellular transport of viruses;
  • New findings/perspectives on dynein-related diseases. 

Dr. Kai Zhang
Dr. Yue Wang
Guest Editors

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Published Papers (2 papers)

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18 pages, 2538 KiB  
Article
N-Terminal Processing and Modification of Ciliary Dyneins
by Miho Sakato-Antoku, Jeremy L. Balsbaugh and Stephen M. King
Cells 2023, 12(20), 2492; https://doi.org/10.3390/cells12202492 - 20 Oct 2023
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Abstract
Axonemal dyneins are highly complex microtubule motors that power ciliary motility. These multi-subunit enzymes are assembled at dedicated sites within the cytoplasm. At least nineteen cytosolic factors are specifically needed to generate dynein holoenzymes and/or for their trafficking to the growing cilium. Many [...] Read more.
Axonemal dyneins are highly complex microtubule motors that power ciliary motility. These multi-subunit enzymes are assembled at dedicated sites within the cytoplasm. At least nineteen cytosolic factors are specifically needed to generate dynein holoenzymes and/or for their trafficking to the growing cilium. Many proteins are subject to N-terminal processing and acetylation, which can generate degrons subject to the AcN-end rule, alter N-terminal electrostatics, generate new binding interfaces, and affect subunit stoichiometry through targeted degradation. Here, we have used mass spectrometry of cilia samples and electrophoretically purified dynein heavy chains from Chlamydomonas to define their N-terminal processing; we also detail the N-terminal acetylase complexes present in this organism. We identify four classes of dynein heavy chain based on their processing pathways by two distinct acetylases, one of which is dependent on methionine aminopeptidase activity. In addition, we find that one component of both the outer dynein arm intermediate/light chain subcomplex and the docking complex is processed to yield an unmodified Pro residue, which may provide a setpoint to direct the cytosolic stoichiometry of other dynein complex subunits that contain N-terminal degrons. Thus, we identify and describe an additional level of processing and complexity in the pathways leading to axonemal dynein formation in cytoplasm. Full article
(This article belongs to the Special Issue Structure and Roles of Dynein in Cellular Processes)
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Review

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33 pages, 12778 KiB  
Review
Structure and Function of Dynein’s Non-Catalytic Subunits
by Lu Rao and Arne Gennerich
Cells 2024, 13(4), 330; https://doi.org/10.3390/cells13040330 - 11 Feb 2024
Cited by 1 | Viewed by 911
Abstract
Dynein, an ancient microtubule-based motor protein, performs diverse cellular functions in nearly all eukaryotic cells, with the exception of land plants. It has evolved into three subfamilies—cytoplasmic dynein-1, cytoplasmic dynein-2, and axonemal dyneins—each differentiated by their cellular functions. These megadalton complexes consist of [...] Read more.
Dynein, an ancient microtubule-based motor protein, performs diverse cellular functions in nearly all eukaryotic cells, with the exception of land plants. It has evolved into three subfamilies—cytoplasmic dynein-1, cytoplasmic dynein-2, and axonemal dyneins—each differentiated by their cellular functions. These megadalton complexes consist of multiple subunits, with the heavy chain being the largest subunit that generates motion and force along microtubules by converting the chemical energy of ATP hydrolysis into mechanical work. Beyond this catalytic core, the functionality of dynein is significantly enhanced by numerous non-catalytic subunits. These subunits are integral to the complex, contributing to its stability, regulating its enzymatic activities, targeting it to specific cellular locations, and mediating its interactions with other cofactors. The diversity of non-catalytic subunits expands dynein’s cellular roles, enabling it to perform critical tasks despite the conservation of its heavy chains. In this review, we discuss recent findings and insights regarding these non-catalytic subunits. Full article
(This article belongs to the Special Issue Structure and Roles of Dynein in Cellular Processes)
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