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  • Review
  • Open Access
118 Citations
28,593 Views
37 Pages

Biofilm formation can lead to problems in healthcare, water distribution systems, food processing and packaging, industrial manufacturing, marine industries, and sanitation. These microbial communities can proliferate on biotic or abiotic surfaces, a...

  • Review
  • Open Access
33 Citations
17,062 Views
21 Pages

Sustainability of Biogas Production from Anaerobic Digestion of Food Waste and Animal Manure

  • Sharath Kumar Ankathi,
  • Utkarsh S. Chaudhari,
  • Robert M. Handler and
  • David R. Shonnard

Anaerobic digestion (AD) involves a set of microbiological reactions and physio-chemical processes to generate biogas, a mixture of predominantly CH4 and CO2. It is commercialized globally; however, AD has limited commercial applications in the U.S....

  • Review
  • Open Access
33 Citations
5,312 Views
13 Pages

Exopolysaccharides Synthesized by Rhizospheric Bacteria: A Review Focused on Their Roles in Protecting Plants against Stress

  • María Evangelina Carezzano,
  • Florencia Belén Alvarez Strazzi,
  • Verónica Pérez,
  • Pablo Bogino and
  • Walter Giordano

16 November 2023

Plants are constantly exposed to a wide range of environmental factors that cause different kinds of stress, such as drought, salinity, heat, frost, and low nutrient availability. There are also biotic sources of stress, which include pathogens (bact...

  • Review
  • Open Access
27 Citations
13,065 Views
23 Pages

The gastrointestinal tract is an environment that hosts various microorganisms, including pathogens. Generally, pathogenic bacteria enter the host body through food and the gastrointestinal tract. These pathogenic bacteria can colonize or infiltrate...

  • Review
  • Open Access
24 Citations
7,764 Views
19 Pages

Arbuscular mycorrhizal (AM) fungi play a crucial role in maintaining sustainable agroecosystems by forming mutualistic relationships with plant roots, improving soil health, facilitating nutrient uptake, and enhancing resilience to abiotic stresses....

  • Review
  • Open Access
22 Citations
9,334 Views
19 Pages

Soil Symphony: A Comprehensive Overview of Plant–Microbe Interactions in Agricultural Systems

  • Arpitha Chatchatnahalli Tharanath,
  • Raje Siddiraju Upendra and
  • Karthik Rajendra

27 November 2024

The rhizosphere, a narrow region of soil surrounding plant roots, is an environment rich in microbial diversity that profoundly influences plants’ health, growth, and agricultural productivity. This microbial community, known as the rhizosphere...

  • Review
  • Open Access
21 Citations
8,653 Views
17 Pages

Colorants have many applications in food, cosmetics, pharmaceutics, textile, paints, plastics, paper, ink and photographic industries. Colorants are classified according to their solubility into dyes and pigments. Those of natural origin have many ad...

  • Review
  • Open Access
20 Citations
5,302 Views
16 Pages

Beneficial Plant–Microbe Interactions and Stress Tolerance in Maize

  • Saroj Burlakoti,
  • Ananta R. Devkota,
  • Shital Poudyal and
  • Amita Kaundal

Beneficial microbes are crucial for improving crop adaptation and growth under various stresses. They enhance nutrient uptake, improve plant immune responses, and help plants tolerate stresses like drought, salinity, and heat. The yield potential of...

  • Review
  • Open Access
19 Citations
23,821 Views
12 Pages

Fermented foods made through microbial growth and enzymatic conversions have been integral to human diets for at least 10,000 years. Recent interest in fermented foods has surged due to their functional properties and health benefits. Cruciferous veg...

  • Article
  • Open Access
17 Citations
8,882 Views
16 Pages

Antibiotic-resistant bacteria (ARB) and antibiotic resistance genes (ARGs) in treated hospital wastewater effluents constitute a major environmental and public health concern. The aim of this study was to investigate the antibiotic resistance pattern...

  • Review
  • Open Access
17 Citations
8,003 Views
25 Pages

The Effect of Gut Microbiome, Neurotransmitters, and Digital Insights in Autism

  • Victoria Bamicha,
  • Pantelis Pergantis and
  • Athanasios Drigas

16 December 2024

Background: Autism spectrum disorder is a multifactorial phenomenon whose genetic, biological, environmental, and nutritional factors outline the heterogeneous phenotype of the disease. A limitation in social connections with others, stereotyped reac...

  • Article
  • Open Access
15 Citations
7,469 Views
12 Pages

Antibiotic-Resistant Bacteria across a Wastewater Treatment Plant

  • Ofélia Godinho,
  • Olga Maria Lage and
  • Sandra Quinteira

Antimicrobial resistance is presently one of the leading causes of death worldwide. The surveillance of different environments, namely, wastewater treatment plants (WWTPs), as hotspots of antibiotic-resistant bacteria, has become crucial under the On...

  • Review
  • Open Access
15 Citations
5,580 Views
13 Pages

The Influence of Technological Shifts in the Food Chain on the Emergence of Foodborne Pathogens: An Overview

  • Saja Hamaideh,
  • Amin N. Olaimat,
  • Murad A. Al-Holy,
  • Ahmad Ababneh,
  • Hafiz Muhammad Shahbaz,
  • Mahmoud Abughoush,
  • Anas Al-Nabulsi,
  • Tareq Osaili,
  • Mutamed Ayyash and
  • Richard A. Holley

The transformation of the food chain due to technological advances has had significant implications in regard to food safety. A noteworthy trend in this evolution relates to the emergence of new or previously unseen pathogens within products, thereby...

  • Review
  • Open Access
15 Citations
8,244 Views
15 Pages

Around 70 million metric tonnes of fruit and vegetable waste (FVW) are produced each year and are eventually discarded as wholesale garbage. Microorganisms decompose this FVW, which has led to environmental contamination, greenhouse gas emissions, an...

  • Review
  • Open Access
15 Citations
7,052 Views
18 Pages

Oxidative Stress Responses in Microalgae: Modern Insights into an Old Topic

  • Aikaterini Koletti,
  • Dimitrios Skliros,
  • Irene Dervisi,
  • Andreas Roussis and
  • Emmanouil Flemetakis

Microalgae are the primary producers in aquatic ecosystems, while simultaneously playing a vital role in various industrial sectors. Despite their significant ecological and bioeconomic importance, the impacts of oxidative stress on their populations...

  • Article
  • Open Access
14 Citations
3,443 Views
20 Pages

Screening of Rhizobacterial Isolates from Apple Rhizosphere for Their Biocontrol and Plant Growth Promotion Activity

  • Salma Jabiri,
  • Ikram Legrifi,
  • Majda Benhammou,
  • Salah-Eddine Laasli,
  • Fouad Mokrini,
  • Mohammed Bendriss Amraoui and
  • Rachid Lahlali

Apple crops are prone to several diseases that limit their production—in particular, root rot caused by a new genus of oomycetes, mainly Phytopythium vexans. This study aims to screen antagonistic bacteria that can play an important role in the...

  • Review
  • Open Access
13 Citations
7,992 Views
19 Pages

Parkinson’s disease is a debilitating multisystemic disorder affecting both the central and peripheral nervous systems. Accumulating evidence suggests a potential interaction between gut microbiota and the pathophysiology of the disease. As a r...

  • Review
  • Open Access
13 Citations
17,413 Views
13 Pages

Weizmannia coagulans, previously known as Bacillus coagulans and before that as Lactobacillus sporogenes, is a spore-forming, lactic acid-producing, Gram-positive, bacillus-shaped bacterial species with several known probiotic strains, including...

  • Review
  • Open Access
13 Citations
4,612 Views
25 Pages

Instances of inflammatory bowel disease (IBD), a chronic inflammatory condition of the gastrointestinal tract, are rapidly increasing in western and newly industrialized countries. Exopolysaccharides (EPSs) are one of the strategies to enhance the gu...

  • Review
  • Open Access
13 Citations
6,569 Views
20 Pages

The escalating threats posed by plant pathogens and the environmental repercussions of conventional agrochemicals necessitate sustainable agricultural solutions. This review focuses on plant growth-promoting microorganisms (PGPMs) such as bacteria, f...

  • Article
  • Open Access
12 Citations
3,702 Views
16 Pages

Potential of Lactic Acid Bacteria and Bacillus spp. in a Bio-Detoxification Strategy for Mycotoxin Contaminated Wheat Grains

  • Sandra Mischler,
  • Amandine André,
  • Susette Freimüller Leischtfeld,
  • Nadina Müller,
  • Irene Chetschik and
  • Susanne Miescher Schwenninger

Mycotoxins present in cereals are a worldwide problem and are a result of the presence of mycotoxin producing fungi. A strategy to reduce these fungi and mycotoxin levels in contaminated grains is with the use of lactic acid bacteria (LAB) or Bacillu...

  • Review
  • Open Access
12 Citations
7,315 Views
17 Pages

Genetic Engineering of Filamentous Fungi: Prospects for Obtaining Fourth-Generation Biological Products

  • Lorena Resende Oliveira,
  • Ariany Rosa Gonçalves,
  • Eliane Dias Quintela,
  • Leandro Colognese,
  • Marcio Vinicius de C. Barros Cortes and
  • Marta Cristina Corsi de Filippi

Filamentous fungi exhibit unparalleled potential as cell factories for protein production, owing to their adeptness in protein secretion and remarkable proficiency in post-translational modifications. This review delineates the role of filamentous fu...

  • Article
  • Open Access
11 Citations
4,551 Views
19 Pages

Bacillus velezensis and Paenibacillus peoriae Strains Effective as Biocontrol Agents against Xanthomonas Bacterial Spot

  • Snizhana Olishevska,
  • Arvin Nickzad,
  • Concetta Restieri,
  • Fadi Dagher,
  • Yan Luo,
  • Jie Zheng and
  • Eric Déziel

14 September 2023

Gram-negative bacteria belonging to the Xanthomonas genus include plant pathogens representing a major challenge in the field of agriculture for a wide variety of economically important crops, such as tomato, pepper, and lettuce. Due to the massive u...

  • Review
  • Open Access
11 Citations
13,030 Views
37 Pages

30 November 2023

This study appraises the progress in the understanding of the composition of the vaginal microflora with a focus on the microbiome during pregnancy. This knowledge is presented with the background of the global health contribution, along with the imp...

  • Article
  • Open Access
11 Citations
3,512 Views
12 Pages

Seasons Influence the Native Gut Microbiome of Lake Trout Salvelinus namaycush

  • Pascale Savard,
  • Tim Fernandes,
  • Amy Dao,
  • Bailey McMeans and
  • Cassandre Sara Lazar

The fish gut microbiome plays an essential role in the host’s development and survival. Environmental factors can shape the gut microbiome and potentially mediate physiological performance. Seasonal environments that experience regular abiotic...

  • Systematic Review
  • Open Access
10 Citations
4,072 Views
10 Pages

Background and Aims: Parkinson’s disease (PD) is a multifaceted disease that can cause symptoms in multiple body systems, including the gastrointestinal (GI) tract. Fecal microbiota transplantation (FMT) is a proposed treatment to address dysre...

  • Review
  • Open Access
10 Citations
7,240 Views
13 Pages

The use of conventional chemical disinfectants is a common practice in built environments and has drastically increased in response to the COVID-19 pandemic. While effective for instantaneous disinfection, the application of chemical disinfectants to...

  • Article
  • Open Access
10 Citations
4,722 Views
22 Pages

Production of Poly(3-Hydroxybutyrate-Co-3-Hydroxyvalerate) by Bacillus megaterium LVN01 Using Biogas Digestate

  • Amanda Lucía Mora Martínez,
  • María Yepes-Pérez,
  • Karent Alexandra Carrero Contreras and
  • Paola Eliana Zapata Moreno

The Bacillus megaterium LVN01 species native to Colombia has demonstrated the ability to metabolize different coproducts or industrial waste (such as fique juice, cane molasses, and residual glycerol) and accumulate polyhydroxybutyrate (PHB), giving...

  • Communication
  • Open Access
9 Citations
3,368 Views
10 Pages

Wastewater treatment plants receive influent wastewater that is contaminated with bacterial pathogens which may be released into the environment if the plant effluent is inadequately treated. In this study, next-generation sequencing was used to perf...

  • Article
  • Open Access
9 Citations
7,129 Views
19 Pages

Optimization of Probiotic Lactobacilli Production for In-Feed Supplementation to Feedlot Cattle

  • Cecilia Aristimuño Ficoseco,
  • Flavia I. Mansilla,
  • Graciela M. Vignolo and
  • María E. Fátima Nader-Macías

The selection of probiotic bacteria based on their beneficial characteristics does not necessarily mean they can be later scaled up and used for technological applications and formula design. Three probiotic strains—Lactobacillus acidophilus CR...

  • Review
  • Open Access
9 Citations
5,654 Views
15 Pages

This review explores the diverse applications and therapeutic potential of endophytic microbes, emphasizing both fungal and bacterial endophytes. These microorganisms reside within plant tissues without causing harm and play an important role in enha...

  • Review
  • Open Access
9 Citations
10,369 Views
14 Pages

Changes in the Skin Microbiome Following Dermatological Procedures: A Scoping Review

  • Jeremy R. Ellis,
  • Eron J. Powell,
  • Luke M. Tomasovic,
  • Rachel L. Marcheskie,
  • Vishruth Girish,
  • Anmol Warman and
  • Darshan Sivaloganathan

The skin microbiome consists of bacteria, fungi, viruses, and mites, which play a crucial role in maintaining skin health and immune function. Imbalances in this microbial community, known as dysbiosis, are implicated in various dermatological condit...

  • Review
  • Open Access
8 Citations
6,288 Views
11 Pages

Psychobiotics as an Intervention in the Treatment of Irritable Bowel Syndrome: A Systematic Review

  • Weronika Gwioździk,
  • Paulina Helisz,
  • Mateusz Grajek and
  • Karolina Krupa-Kotara

Today’s perceived excess of work versus rest and excessive stressful situations are one of the potential factors for an increasing number of gastrointestinal disorders. Although the prevalence of irritable bowel syndrome (IBS) varies widely, it...

  • Article
  • Open Access
8 Citations
13,864 Views
18 Pages

The Impact of Formulation and Freeze Drying on the Properties and Performance of Freeze-Dried Limosilactobacillus reuteri R2LC

  • Nisha Tyagi,
  • Zandra Gidlöf,
  • Daniel Tristan Osanlóo,
  • Elizabeth S. Collier,
  • Sandeep Kadekar,
  • Lovisa Ringstad,
  • Anna Millqvist Fureby and
  • Stefan Roos

3 December 2023

Freeze drying is a commonly used method for preserving probiotic bacteria and live biotherapeutic products. Before drying, the bacterial cells are formulated with a lyoprotectant, and the design of these two process steps are crucial to achieve a hig...

  • Article
  • Open Access
8 Citations
3,312 Views
19 Pages

Green Macroalgae Hydrolysate for Biofuel Production: Potential of Ulva rigida

  • Walaa Sayed,
  • Audrey Cabrol,
  • Alaa Salma,
  • Abdeltif Amrane,
  • Maud Benoit,
  • Ronan Pierre and
  • Hayet Djelal

In this study, the green macroalgae Ulva rigida, which contains 34.9% carbohydrates, underwent treatment with commercial hydrolytic enzymes. This treatment yielded a hydrolysate that contained 23 ± 0.6 g·L−1 of glucose, which was...

  • Article
  • Open Access
8 Citations
3,315 Views
12 Pages

Structural Characterization and Immunomodulatory Activity of an Exopolysaccharide Produced by Probiotic Leuconostoc mesenteroides 201607 Isolated from Fermented Food

  • Selvakumar Vijayalakshmi,
  • Jong-Rai Kim,
  • Ramachandran Chelliah,
  • Kaliyan Barathikannan,
  • Abdurahman Hajinur Hirad and
  • Deog-Hwan Oh

Fermented foods containing probiotic Leuconostoc mesenteroides 201607 (LM) were used to extract exopolysaccharides. An incomplete understanding exists regarding the immunomodulatory characteristics of exopolysaccharides (EPSs), which are important co...

  • Article
  • Open Access
8 Citations
7,327 Views
12 Pages

The production and consumer use of disinfectants has substantially increased during the COVID-19 pandemic. Benzalkonium chloride (BAC) is a mixture of alkyl benzyl dimethyl ammonium chloride compounds and is the most common active ingredient in surfa...

  • Review
  • Open Access
8 Citations
7,795 Views
17 Pages

Microbiome data is high dimensional, sparse, compositional, and over-dispersed. Therefore, modeling microbiome data is very challenging and it is an active research area. Microbiome analysis has become a progressing area of research as microorganisms...

  • Review
  • Open Access
8 Citations
4,379 Views
22 Pages

Incorporation of Cyanobacteria and Microalgae in Yogurt: Formulation Challenges and Nutritional, Rheological, Sensory, and Functional Implications

  • Rosana Correia Vieira Albuquerque,
  • Carlos Eduardo de Farias Silva,
  • Wanderson dos Santos Carneiro,
  • Kaciane Andreola,
  • Brígida Maria Villar da Gama and
  • Albanise Enide da Silva

30 October 2024

This review presents an approach to the incorporation of cyanobacteria and microalgae in yogurts and explores their impact on the nutritional, rheological, sensory, and antioxidant qualities of these products. First, the yogurt market context and its...

  • Article
  • Open Access
8 Citations
5,947 Views
12 Pages

A Comparison of the Microbial Populations in a Culture-Dependent and a Culture-Independent Analysis of Industrial Water Samples

  • Douglas B. McIlwaine,
  • Mackenzie Moore,
  • Alexsandra Corrigan,
  • Benjamin Niemaseck and
  • Danika Nicoletti

Culture-dependent and culture-independent microbiological methods are two approaches used to study microbial community composition. Culture-dependent methods have been the standard method used for many years but have limited utility with unculturable...

  • Review
  • Open Access
8 Citations
5,443 Views
32 Pages

Microalgae-Based Functional Foods: A Blue-Green Revolution in Sustainable Nutrition and Health

  • Gabriela Andrade-Bustamante,
  • Francisco Eleazar Martínez-Ruiz,
  • Jesus Ortega-García,
  • Prabhaharan Renganathan,
  • Lira A. Gaysina,
  • Muhilan Mahendhiran and
  • Edgar Omar Rueda Puente

The projected global population of 9.22 billion by 2075 necessitates sustainable food sources that provide health benefits beyond essential nutrition, as the relationship between food biochemistry and human well-being is becoming increasingly signifi...

  • Review
  • Open Access
8 Citations
7,252 Views
27 Pages

17 December 2024

Prodigiosin is a fascinating compound that has been gaining attention in the scientific community for its diverse range of potential applications. From its vibrant red color to its unique chemical properties, prodigiosin has captured the interest of...

  • Article
  • Open Access
8 Citations
3,153 Views
15 Pages

In the European Union, gastrointestinal disease in pigs is the main indication for the use of colistin, but large-scale epidemiologic data concerning the frequency of mobile colistin resistance (mcr) genes in pig-associated pathotypes of Escherichia ...

  • Article
  • Open Access
7 Citations
4,139 Views
17 Pages

This study investigated the effects of arbuscular mycorrhizal fungi (AMF) on the growth, phosphorus (P) uptake, and yield of maize in the presence or absence of tillage. The two-year field experiment was conducted in Kanagawa, Japan. Firstly, we inve...

  • Article
  • Open Access
7 Citations
2,995 Views
18 Pages

12 September 2023

Phytoplasmas are associated with important bacterial diseases, causing severe symptoms in agricultural and ornamental crops. ‘Candidatus Phytoplasma rubi’, associated with the Rubus stunt in raspberries (Rubus idaeus) and blackberries (Ru...

  • Review
  • Open Access
7 Citations
7,379 Views
23 Pages

Streptococcus thermophilus is a Gram-positive, homofermentative lactic acid bacterium classified within the Firmicutes phylum, recognized for its probiotic properties and significant role in promoting human health. This review consolidates existing u...

  • Review
  • Open Access
7 Citations
6,271 Views
16 Pages

Bacterial Cellulose Production in Co-Culture Systems: Opportunities, Challenges, and Future Directions

  • Dheanda Absharina,
  • Filemon Jalu Nusantara Putra,
  • Chiaki Ogino,
  • Sándor Kocsubé,
  • Csilla Veres and
  • Csaba Vágvölgyi

Bacterial cellulose (BC), a nanostructured biopolymer produced by Komagateibacter spp., exhibits remarkable mechanical strength, purity, and biocompatibility, making it highly attractive for applications in biomedicine, food, and sustainable material...

  • Review
  • Open Access
7 Citations
8,111 Views
36 Pages

Sourdough fermentation, driven by the biochemical activity of lactic acid bacteria (LAB), presents a scientifically promising approach to addressing nutritional limitations in cereal-based staples. This review critically examines both the underlying...

  • Article
  • Open Access
7 Citations
6,067 Views
15 Pages

3 December 2023

Medium optimization and development for selective bacterial cultures are essential for isolating and functionalizing individual bacteria in microbial communities; nevertheless, it remains challenging due to the unknown mechanisms between bacterial gr...

  • Article
  • Open Access
7 Citations
5,194 Views
25 Pages

28 November 2023

Although current diet and nutrition trends in developed countries led the poultry industry to shift to alternative breeding/production methods, such as organic and free-range, limited data on the microbiology of alternative compared to conventional p...

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Appl. Microbiol. - ISSN 2673-8007