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Applied Microbiology, Volume 5, Issue 3

2025 September - 45 articles

Cover Story: The cover image illustrates co-culture strategies for bacterial cellulose (BC) production, where Komagataeibacter interacts with complementary microbes such as yeasts, lactic acid bacteria, and microalgae. These interactions enable metabolic cross-feeding, substrate valorization, and in situ functionalization of BC. The visual also highlights diverse bioreactor configurations, including static trays, rotating disks, and mesh dispensers that support oxygen transfer and process control. The review emphasizes both opportunities and challenges in maintaining process stability, designing scalable reactors, and ensuring consistent product quality, while underscoring the role of multi-omics approaches in unraveling mechanistic insights to optimize BC biosynthesis for sustainable industrial applications. View this paper
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Articles (45)

  • Article
  • Open Access
1 Citations
933 Views
13 Pages

Asparaginase (ASNase) is an important enzyme used to treat acute lymphoblastic leukemia. However, the clinical use of the currently available ASNases is limited because of their associated side effects. One of the major reasons for these adverse effe...

  • Article
  • Open Access
1 Citations
1,009 Views
12 Pages

Dietary Saccharomyces cerevisiae Ameliorates the Adverse Effects of Aflatoxin B1 on Growth Performance, Haematological and Biochemical Parameters in Broiler Chickens

  • Doanh Huy Bui,
  • Vinh Thi Nguyen,
  • Giang Thi Phuong Nguyen,
  • Le Thị Tuyet Nguyen,
  • Yen Thi Dinh,
  • Hai Thai Dang,
  • Tiep Ba Nguyen,
  • Thinh Hoang Nguyen,
  • Majid Shakeri and
  • Hieu Huu Le

Aflatoxin contamination of animal feeds may impact broiler chicken health and production. The adverse impact of aflatoxin can be ameliorated and detoxified by adding capable binding agents, such as Saccharomyces cerevisiae. A total of 648 mixed gende...

  • Article
  • Open Access
727 Views
13 Pages

Surface Display of Human GM-CSF in Methylotrophic Yeasts

  • Olena Dmytruk,
  • Nataliya Finiuk,
  • Rostyslav Stoika,
  • Andriy Sibirny and
  • Kostyantyn Dmytruk

Human granulocyte-macrophage colony-stimulating factor (GM-CSF) is an important therapeutic cytokine. Methylotrophic yeasts such as Komagataella phaffii and Ogataea parapolymorpha are attractive hosts for recombinant protein production. In this study...

  • Article
  • Open Access
1,024 Views
19 Pages

This work was undertaken in order to identify the presence of changes in the characteristics of poly(vinyl alcohol) (PVA) cryogels that can contribute to the degradation of such polymer matrices under the influence of their contact with various micro...

  • Article
  • Open Access
1 Citations
1,796 Views
23 Pages

Composition and Occurrence of Airborne Fungi in Two Urbanized Areas of the City of Sofia, Bulgaria

  • Margarita Ivanova,
  • Galina Stoyancheva,
  • Vladislava Dishliyska,
  • Jeny Miteva-Staleva,
  • Radoslav Abrashev,
  • Boryana Spasova,
  • Yana Gocheva,
  • Lyudmila Yovchevska,
  • Galina Satchanska and
  • Ekaterina Krumova
  • + 1 author

Air pollution remains one of the most urgent global challenges, affecting both public health and environmental integrity, with its severity escalating in parallel with industrialization and urban expansion. Defined as the presence of harmful substanc...

  • Article
  • Open Access
1 Citations
1,972 Views
21 Pages

Phyllosphere Antagonistic Bacteria Induce Growth Promotion and Effective Anthracnose Control in Cucumber

  • Mst. Habiba Kamrun Nahar,
  • Preangka Saha Briste,
  • Md. Rabiul Islam,
  • Touhidur Rahman Anik,
  • Md. Tanbir Rubayet,
  • Imran Khan,
  • Md. Motaher Hossain and
  • Mohammad Golam Mostofa

The phyllosphere, the aerial part of plants, serves as a crucial habitat for diverse microorganisms. Phyllosphere bacteria can activate protective mechanisms that help plants resist disease. This study focuses on isolating and characterizing phyllosp...

  • Article
  • Open Access
1,289 Views
16 Pages

Valorisation of spent yeast biomass post-fermentation requires energy-intensive autolysis or enzymatic hydrolysis that reduces the net benefit. Here, we present a simple and reproducible method for generating functional yeast extract recycled from Ko...

  • Article
  • Open Access
656 Views
18 Pages

This study evaluates the effects of two Trichoderma reesei exogenous fibrolytic enzyme (EFE) preparations on the taxonomic profile, diversity, relative abundance, and population shifts of three ruminal bacteria fractions of lactating cows: free-float...

  • Review
  • Open Access
7 Citations
6,092 Views
16 Pages

Bacterial Cellulose Production in Co-Culture Systems: Opportunities, Challenges, and Future Directions

  • Dheanda Absharina,
  • Filemon Jalu Nusantara Putra,
  • Chiaki Ogino,
  • Sándor Kocsubé,
  • Csilla Veres and
  • Csaba Vágvölgyi

Bacterial cellulose (BC), a nanostructured biopolymer produced by Komagateibacter spp., exhibits remarkable mechanical strength, purity, and biocompatibility, making it highly attractive for applications in biomedicine, food, and sustainable material...

  • Article
  • Open Access
2,053 Views
14 Pages

Biosynthesis of the Siderophore Desferrioxamine E in Rouxiella badensis SER3 and Its Antagonistic Activity Against Fusarium brachygibbosum

  • Luzmaria R. Morales-Cedeño,
  • Sergio de los Santos Villalobos,
  • Pedro D. Loeza-Lara,
  • Debasis Mitra,
  • Ajay Kumar,
  • Ma. del Carmen Orozco-Mosqueda and
  • Gustavo Santoyo

Iron is a limiting factor for plant and microbial growth because, in soil environments, it is predominantly present as oxyhydroxide minerals, rendering it unavailable to plants and microorganisms. Siderophores are chelating agents secreted to solubil...

  • Review
  • Open Access
1 Citations
4,899 Views
20 Pages

The Microbiome as a Driver of Insect Physiology, Behavior, and Control Strategies

  • Hazem Al Darwish,
  • Muqaddasa Tariq,
  • Safiyah Salama,
  • Tia Hart and
  • Jennifer S. Sun

Insect pests impose major economic, agricultural, and public health burdens, damaging crops and transmitting pathogens such as dengue, malaria, and Zika. Conventional chemical control is increasingly ineffective due to insecticide resistance and envi...

  • Article
  • Open Access
904 Views
11 Pages

Investigating the Role of Cytoskeletal Dynamics in Cronobacter Invasion: A Study of Caco-2 and H4 Cell Lines

  • Mahmoud B. Agena,
  • Khaled M. Ibrahim,
  • Abdlrhman M. Alsonosi,
  • Mohamed T. Saad and
  • Bassam A. Elgamoudi

Pathogenic bacteria have developed different ways to cause infections. One strategy involves using components from host cells. This study looks at the role of the cytoskeleton in the human colon adenocarcinoma Caco-2 and neonatal non-transformed epit...

  • Article
  • Open Access
1,284 Views
16 Pages

Lactic Acid Fermentation Inactivates Salmonella Typhimurium in Contaminated Cattle Manure at Moderate and Low Temperatures

  • Hannah Halm,
  • Sören Woelke,
  • Ines Lehnert,
  • Thorben Schilling,
  • Thorsten Meissner,
  • Charlotte Schröder,
  • Ludwig E. Hoelzle and
  • Hendrik A. Scheinemann

In the case of a notifiable animal disease like salmonellosis, manure is contaminated and must be disinfected. This can be performed using heat measures, chemical disinfectants, or long-term storage. All these measures bring along severe economic, ec...

  • Article
  • Open Access
2,248 Views
15 Pages

Escherichia coli O157:H7 has been an important foodborne pathogen causing severe disease in humans worldwide. It is challenging to control E. coli O157:H7 due to its intrinsic acid resistance, ability to survive in various environments, and the emerg...

  • Feature Paper
  • Article
  • Open Access
1 Citations
1,923 Views
23 Pages

Coffee pulp, the primary residue generated during the wet processing of Coffea arabica L., is frequently applied directly to fields as a crude soil amendment. However, this practice often lacks proper microbial stabilization, limiting its agronomic p...

  • Article
  • Open Access
1,147 Views
14 Pages

Myxobacteria, a group of swarming, predatory soil bacteria, are of interest because of their biocontrol potential. In this study, the inhibitory effects of 13 strains of myxobacteria were examined against four different phytopathogenic fungi, as foll...

  • Review
  • Open Access
1 Citations
1,986 Views
15 Pages

Microbial metabolites offer a multitude of mechanisms for alleviating diabetes, particularly type 2 diabetes (T2D). However, the metabolites of yeasts recognised as safe remain under-explored and are receiving less attention in the treatment of T2D....

  • Review
  • Open Access
4 Citations
4,642 Views
15 Pages

Veterinary vaccines are essential tools for controlling infectious and zoonotic diseases, safeguarding animal welfare, and ensuring global food security. However, conventional vaccines are hindered by cold-chain dependence, thermal instability, and l...

  • Article
  • Open Access
2,011 Views
16 Pages

Black Soldier Fly Gut Microbiota Resists Invasion by Bacillus subtilis 168 and Pseudomonas putida KT2440

  • Joachim Carpentier,
  • Grégoire Noël,
  • Bo Li,
  • Frédéric Francis and
  • Rudy Caparros Megido

Due to its high bioconversion efficiency and nutritional value, the black soldier fly (Hermetia illucens L. 1758) is a promising insect species for sustainable animal feed production. However, concerns remain regarding microbial safety when larvae ar...

  • Article
  • Open Access
1,776 Views
14 Pages

Salmonella is a zoonotic foodborne pathogen that affects poultry health and reaches consumers through the food chain via contaminated products. A cross-sectional study was conducted to isolate and identify Salmonella and to detect antibiotic resistan...

  • Article
  • Open Access
1 Citations
1,372 Views
19 Pages

Foodborne illness caused by bacterial pathogens is a global health concern and results in millions of infections annually. Therefore, food products typically undergo several processing stages, including sanitation steps, before being distributed in a...

  • Review
  • Open Access
5 Citations
4,039 Views
31 Pages

Mechanistic Role of Heavy Metals in Driving Antimicrobial Resistance: From Rhizosphere to Phyllosphere

  • Rahul Kumar,
  • Tanja P. Vasić,
  • Sanja P. Živković,
  • Periyasamy Panneerselvam,
  • Gustavo Santoyo,
  • Sergio de los Santos Villalobos,
  • Adeyemi Nurudeen Olatunbosun,
  • Aditi Pandit,
  • Leonard Koolman and
  • Pankaj Gautam
  • + 1 author

Heavy metal pollution represents a pervasive environmental challenge that significantly exacerbates the ever-increasing crisis of antimicrobial resistance and the capacity of microorganisms to endure and proliferate despite antibiotic interventions....

  • Review
  • Open Access
1 Citations
2,834 Views
48 Pages

Applied Microbiology for Sustainable Agricultural Development

  • Barbara Sawicka,
  • Piotr Barbaś,
  • Viola Vambol,
  • Dominika Skiba,
  • Piotr Pszczółkowski,
  • Parwiz Niazi and
  • Bernadetta Bienia

Background: Developments in biology, genetics, soil science, plant breeding, engineering, and agricultural microbiology are driving advances in soil microbiology and microbial biotechnology. Material and methods: The literature for this review was co...

  • Article
  • Open Access
3 Citations
2,057 Views
14 Pages

Sustainability represents a significant global challenge, requiring a balance between environmental impact and the use of natural resources. White biotechnology, which uses microorganisms and enzymes for environmentally friendly products and processe...

  • Article
  • Open Access
1,176 Views
18 Pages

The study aimed to identify potential sources of novel probiotic yeasts exhibiting health-promoting properties. A combination of metabarcoding analysis and cultural methods was employed to investigate and isolate yeasts from various sources, includin...

  • Article
  • Open Access
760 Views
16 Pages

Sustainable Bioconversion of Cashew Apple Bagasse Hemicellulosic Hydrolysate into Xylose Reductase and Xylitol by Candida tropicalis ATCC 750: Impact of Aeration and Fluid Dynamics

  • Juliana de França Serpa,
  • Franciandro Dantas dos Santos,
  • Carlos Eduardo Alves Soares,
  • Benevides Costa Pessela and
  • Maria Valderez Ponte Rocha

This study aimed to evaluate the production of xylose reductase (XR), an enzyme responsible for converting xylose into xylitol, by Candida tropicalis ATCC 750 using hemicellulosic hydrolysate from cashew apple bagasse (CABHM) as a low-cost carbon sou...

  • Review
  • Open Access
5 Citations
7,885 Views
36 Pages

Sourdough fermentation, driven by the biochemical activity of lactic acid bacteria (LAB), presents a scientifically promising approach to addressing nutritional limitations in cereal-based staples. This review critically examines both the underlying...

  • Review
  • Open Access
1 Citations
4,000 Views
20 Pages

The increasing threat of antimicrobial resistance (AMR), along with the limited availability of new lead compounds in the drug development pipeline, highlights the urgent need to discover antimicrobial agents with innovative mechanisms of action. In...

  • Article
  • Open Access
1 Citations
1,766 Views
22 Pages

Myocardial infarction (MI) is an inflammatory disease responsible for approximately 75% of sudden cardiac deaths. In this study, we aimed to evaluate the cardio-protective influence of microencapsulated probiotic and synbiotic dietary supplements in...

  • Article
  • Open Access
1,458 Views
21 Pages

A fungal strain with comparably high chitosan yield was isolated from the Shivaganga hills and identified as Aspergillus versicolor AD07 through molecular characterization. Later, the strain was cultivated on Sabouraud Dextrose Broth (SDB) and wild j...

  • Perspective
  • Open Access
2 Citations
2,904 Views
16 Pages

The Gut–Brain Axis in Schizophrenia: A Systems-Level Understanding of Psychiatric Illness

  • Austin Mardon,
  • Haadiya Chaudhry,
  • Jonathan Harline,
  • Catherine Mardon,
  • Jenna Banks,
  • Eric Hodgson and
  • Jean-Luc Leong-Sit

Schizophrenia is a complex psychiatric disorder traditionally linked to neurotransmitter dysregulation, particularly within dopamine and glutamate pathways. However, recent evidence implicates the gut–brain axis as a potential contributor to it...

  • Article
  • Open Access
869 Views
23 Pages

Alkalihalophilus marmarensis is an obligate alkaliphile with exceptional tolerance to high-pH environments, making it a promising candidate for industrial bioprocesses that require contamination-resistant and extremophilic production platforms. Howev...

  • Review
  • Open Access
2 Citations
2,776 Views
21 Pages

Antimicrobial Compounds from Anaerobic Microorganisms: A Review of an Untapped Reservoir

  • Mamta Mishra,
  • Upasana Sharma,
  • Manisha Rawat,
  • Harshvardhan,
  • Shelley Sardul Singh and
  • Suresh Korpole

Anaerobes, the oldest evolutionary life forms, have been unexplored for their potential to produce secondary metabolites due to the difficulties observed in their cultivation. Antimicrobials derived from anaerobic bacteria are an emerging and valuabl...

  • Article
  • Open Access
1,451 Views
19 Pages

Applied Metagenomic Profiling of Domestic Cat Feces from Cali, Colombia: An Exploratory Approach

  • Monica Pimienta,
  • Hernan Florez-Rios,
  • Angie Patiño-Montoya,
  • Anyelo Florez,
  • Lizeth Mejia,
  • Raul Sedano and
  • Andres Castillo

This exploratory study presents the first metagenomic assessment of the gut microbiome in domestic cats from Cali, Colombia. Fecal samples were collected from 10 healthy, sterilized domestic cats, aged 8 months to over 2 years, with variation in sex...

  • Article
  • Open Access
2,282 Views
18 Pages

Application of Trichoderma spp. to Control Colletotrichum sp. and Pseudopestalotiopsis spp., Causing Agents of Fruit Rot in Pomelo (Citrus maxima (Burm.) Merr.)

  • Nguyen Quoc Khuong,
  • Le Ba Duy,
  • Vo Minh Thuan,
  • Nguyen Thanh Ngan,
  • Phan Chan Hiep,
  • Le Thanh Quang,
  • Nguyen Duc Trong,
  • Ha Ngoc Thu,
  • Do Thi Xuan and
  • Ngo Thanh Phong
  • + 3 authors

Fruit rot seriously damages pomelo production. Given concerns regarding the safety of chemical agents, biological alternatives are becoming more preferable. Therefore, the experiment aimed to (i) identify the pathogens causing pomelo fruit rot diseas...

  • Article
  • Open Access
3 Citations
1,402 Views
20 Pages

Cheese ripening involves microbial changes, with starter lactic acid bacteria (SLAB) initiating fermentation and nonstarter lactic acid bacteria (NSLAB) driving flavor and texture development. However, heat-resistant spores of Clostridium and Bacillu...

  • Review
  • Open Access
2 Citations
3,434 Views
30 Pages

Functional Versatility of Vibrio cholerae Outer Membrane Proteins

  • Annabelle Mathieu-Denoncourt and
  • Marylise Duperthuy

A key feature that differentiates Gram-positive and Gram-negative bacteria is the outer membrane, an asymmetric membrane composed of lipopolysaccharides, phospholipids, lipoproteins and integral proteins, including the outer-membrane proteins (OMPs)....

  • Article
  • Open Access
2,518 Views
37 Pages

Comprehensive Analysis of E. coli, Enterococcus spp., Salmonella enterica, and Antimicrobial Resistance Determinants in Fugitive Bioaerosols from Cattle Feedyards

  • Ingrid M. Leon,
  • Brent W. Auvermann,
  • K. Jack Bush,
  • Kenneth D. Casey,
  • William E. Pinchak,
  • Gizem Levent,
  • Javier Vinasco,
  • Sara D. Lawhon,
  • Jason K. Smith and
  • Keri N. Norman
  • + 1 author

Antimicrobial use in food animals selects for antimicrobial-resistant (AMR) bacteria, which most commonly reach humans via the food chain. However, AMR bacteria can also escape the feedyard via agricultural runoff, manure used as crop fertilizer, and...

  • Article
  • Open Access
1 Citations
1,193 Views
28 Pages

Association Between Adherence Levels to the EAT-Lancet Diet in Habitual Intake and Selected Gut Bacteria in a Mexican Subpopulation

  • Mariana Lares-Michel,
  • Rafael Vázquez-Solórzano,
  • Zyanya Reyes-Castillo,
  • Leilani Clarissa Salaiza-Ambriz,
  • Salvador Ramírez-Guerrero,
  • Fatima Ezzahra Housni,
  • Avilene Rodríguez-Lara and
  • Jesús R. Huertas

The EAT-Lancet diet is an outstanding model of a healthy, environmentally sustainable diet. However, its effects on the gut microbiota remain poorly explored. This study assessed the asso-ciation between adherence to the EAT-Lancet diet in habitual i...

  • Article
  • Open Access
1,212 Views
15 Pages

The whole-genome sequencing of lactic acid bacteria provides a valuable resource for identifying the genetic determinants underlying molecular mechanisms related to their probiotic properties. Analysis of draft genome sequences relies on bioinformati...

  • Article
  • Open Access
1,044 Views
12 Pages

Characterizing Aqueous Extracts of Native Plants in Northeastern Mexico: Prospects for Quorum-Sensing Inhibition Against Gram-Negative Bacteria

  • Jose E. Quiroz-Hernandez,
  • Gustavo Hernandez-Vidal,
  • Orquidea Perez-Gonzalez,
  • Uziel Castillo-Velazquez and
  • Victor E. Aguirre-Arzola

The growing threat of antibiotic-resistant Gram-negative bacteria highlights the urgent need for innovative, non-bactericidal therapeutic strategies. Quorum-sensing (QS) inhibition has emerged as a promising approach to attenuate bacterial virulence...

  • Article
  • Open Access
1,063 Views
13 Pages

Respiratory Microbiota Associations with Asthma Across American and Emirati Adults: A Comparative Analysis

  • Ariangela J. Kozik,
  • Kyra Henderson,
  • Laila Salameh,
  • Bassam Mahboub,
  • Mohammad T. Al Bataineh and
  • Yvonne J. Huang

Background: Clinical features of asthma are associated with differences in the lower airway microbiome. However, knowledge is limited on whether airway microbiota composition differs between individuals residing in different geographic regions and if...

  • Article
  • Open Access
1,400 Views
16 Pages

E. coli attaches to, and forms biofilms on various surfaces, including latex and polystyrene, contributing to nosocomial spread. E. coli responds to both exogenous and endogenous insulin, which induces behavioral changes. Human insulin, a quorum sign...

  • Article
  • Open Access
1,280 Views
18 Pages

Microbiome Signatures and Inflammatory Biomarkers in Culture-Negative Neonatal Sepsis

  • Morcos Hanna,
  • Shixia Huang,
  • Matthew Ross,
  • Anaid Reyes,
  • Dimuthu Perera,
  • Anil Surathu,
  • Sara Javornik Cregeen,
  • Joseph Hagan and
  • Mohan Pammi

Overuse of antibiotics is a concern in ‘culture-negative sepsis’ but it is unclear whether this is due to infection with viruses, fungi or other microbes that are not easily cultured, or whether it results from inflammatory processes. In...

  • Article
  • Open Access
725 Views
13 Pages

Differential Rumen Microbial Taxa in Charolais Bulls with Divergent Residual Feed Intake

  • Taylor Sidney,
  • Emily Treon,
  • Godstime Taiwo,
  • Samanthia Johnson,
  • Yarahy Leal,
  • Peixin Fan and
  • Ibukun M. Ogunade

The rumen microbiome impacts beef cattle feed efficiency, a key economic factor in production systems. This study investigated the rumen microbiome of Charolais bulls with divergent residual feed intake-expected progeny difference (RFI-EPD) values to...

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Appl. Microbiol. - ISSN 2673-8007