Integrative Omics Analysis of Plant-Microbe Interactions

Dear Colleagues,

The study of plant–microbe interactions is essential for promoting sustainable agriculture and ecosystem health, especially in the context of climate change and global food security. Traditionally, research focused on individual omics layers; however, integrated multi-omics approaches (e.g., genomics, transcriptomics, proteomics, metabolomics) now provide a comprehensive understanding of the molecular dialogues involved in symbiosis, pathogenesis, and immune responses. These technologies identify key genes, proteins, and metabolic pathways that facilitate beneficial interactions like nutrient acquisition and systemic resistance while also revealing pathogen evasion strategies.

This Special Issue aims to highlight innovative research utilizing integrative omics to explore plant–microbe dynamics. We invite studies employing novel computational and experimental methods—including systems biology, single-cell omics, spatial transcriptomics, and synthetic biology—to integrate multi-omics datasets. Topics of interest include microbiome engineering, rhizosphere effector molecules, and cross-kingdom signalling networks. We welcome original research and reviews that connect fundamental insights with applications in crop resilience, disease management, and sustainable agricultural practices.

Dr. Haifeng Liu
Prof. Dr. Jiansheng Chen
Guest Editors

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