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Metabolites, Volume 11, Issue 3

2021 March - 63 articles

Cover Story: Although impaired brain energy metabolism due to mitochondrial dysfunction isconsidered to be a major contributing factor for various neurodegenerative diseases, non-invasive and quantitative assessment of human brain energy metabolism is challenging. In this work, we demonstrate that by utilizing advanced ultrahigh field in vivo 31P MRS based metabolic imaging technology, it is possible to quantify key metabolic–energetic parameters in human brains, including the concentration of major phosphorous metabolites related to ATP energy and phospholipid metabolism, intracellular pH and NAD redox state, the activity of ATPase and Creatine Kinase, and the corresponding cerebral ATP production rates. These advanced technologies can detect subtle metabolic and bioenergetic changes at an early stage of neurodegeneration and provide exciting opportunities for monitoring disease progression and/or treatment response. View this pape

Articles (63)

  • Article
  • Open Access
12 Citations
3,845 Views
11 Pages

The Interaction of the Flavonoid Fisetin with Human Glutathione Transferase A1-1

  • Mohammed Hamed Alqarni,
  • Ahmed Ibrahim Foudah,
  • Magdy Mohamed Muharram and
  • Nikolaos E. Labrou

23 March 2021

Glutathione transferases (GSTs) are a family of Phase II detoxification enzymes that are involved in the development of the multidrug resistance (MDR) mechanism in cancer cells and therefore affect the clinical outcome of cancer chemotherapy. The dis...

(This article belongs to the Special Issue Advances in Plant Specialized Metabolites: How to Take Full Advantages of the Properties of Specialized Metabolites?)
  • Article
  • Open Access
11 Citations
4,856 Views
15 Pages

L-Carnitine Stimulates In Vivo Carbohydrate Metabolism in the Type 1 Diabetic Heart as Demonstrated by Hyperpolarized MRI

  • Dragana Savic,
  • Vicky Ball,
  • M. Kate Curtis,
  • Maria da Luz Sousa Fialho,
  • Kerstin N. Timm,
  • David Hauton,
  • James West,
  • Julian Griffin,
  • Lisa C. Heather and
  • Damian J. Tyler

23 March 2021

The diabetic heart is energetically and metabolically abnormal, with increased fatty acid oxidation and decreased glucose oxidation. One factor contributing to the metabolic dysfunction in diabetes may be abnormal handling of acetyl and acyl groups b...

(This article belongs to the Special Issue Applications of Magnetic Resonance (MR)-Based Metabolic Imaging in Medicine)
  • Article
  • Open Access
10 Citations
3,521 Views
12 Pages

Elemental and Isotopic Characterization of Tobacco from Umbria

  • Luana Bontempo,
  • Daniela Bertoldi,
  • Pietro Franceschi,
  • Fabio Rossi and
  • Roberto Larcher

22 March 2021

Umbrian tobacco of the Virginia Bright variety is one of the most appreciated tobaccos in Europe, and one characterized by an excellent yield. In recent years, the Umbria region and local producers have invested in introducing novel practices (for pr...

  • Feature Paper
  • Article
  • Open Access
45 Citations
8,882 Views
17 Pages

Goldfish Response to Chronic Hypoxia: Mitochondrial Respiration, Fuel Preference and Energy Metabolism

  • Elie Farhat,
  • Hang Cheng,
  • Caroline Romestaing,
  • Matthew Pamenter and
  • Jean-Michel Weber

22 March 2021

Hypometabolism is a hallmark strategy of hypoxia tolerance. To identify potential mechanisms of metabolic suppression, we have used the goldfish to quantify the effects of chronically low oxygen (4 weeks; 10% air saturation) on mitochondrial respirat...

(This article belongs to the Special Issue Ectotherms Metabolism: Plasticity and Adaptation)
  • Article
  • Open Access
12 Citations
4,462 Views
18 Pages

Stable Isotopic Tracer Phospholipidomics Reveals Contributions of Key Phospholipid Biosynthetic Pathways to Low Hepatocyte Phosphatidylcholine to Phosphatidylethanolamine Ratio Induced by Free Fatty Acids

  • Kang-Yu Peng,
  • Christopher K Barlow,
  • Helene Kammoun,
  • Natalie A Mellett,
  • Jacquelyn M Weir,
  • Andrew J Murphy,
  • Mark A Febbraio and
  • Peter J Meikle

22 March 2021

There is a strong association between hepatocyte phospholipid homeostasis and non-alcoholic fatty liver disease (NAFLD). The phosphatidylcholine to phosphatidylethanolamine ratio (PC/PE) often draws special attention as genetic and dietary disruption...

(This article belongs to the Special Issue 10th Anniversary of Metabolites: The Changing Landscape of Metabolomics)
  • Article
  • Open Access
7 Citations
6,150 Views
23 Pages

The Role of Risk or Contributory Death Factors in Methadone-Related Fatalities: A Review and Pooled Analysis

  • Arianna Giorgetti,
  • Jennifer Pascali,
  • Massimo Montisci,
  • Irene Amico,
  • Barbara Bonvicini,
  • Paolo Fais,
  • Alessia Viero,
  • Raffaele Giorgetti,
  • Giovanni Cecchetto and
  • Guido Viel

22 March 2021

Methadone-related deaths are characterized by a wide range of post-mortem blood concentrations, due to the high pharmacokinetic/dynamic inter-individual variability, the potential subjective tolerance state and to other risk factors or comorbidities,...

(This article belongs to the Special Issue Metabolite Analysis in Forensic Toxicology)
  • Review
  • Open Access
160 Citations
15,486 Views
18 Pages

21 March 2021

Metabolomics deals with multiple and complex chemical reactions within living organisms and how these are influenced by external or internal perturbations. It lies at the heart of omics profiling technologies not only as the underlying biochemical la...

(This article belongs to the Special Issue Development and Application of Statistical Methods for Analyzing Metabolomics Data)
  • Article
  • Open Access
16 Citations
4,171 Views
13 Pages

Association of Human Plasma Metabolomics with Delayed Dark Adaptation in Age-Related Macular Degeneration

  • Kevin M. Mendez,
  • Janice Kim,
  • Inês Laíns,
  • Archana Nigalye,
  • Raviv Katz,
  • Shrinivas Pundik,
  • Ivana K. Kim,
  • Liming Liang,
  • Demetrios G. Vavvas and
  • Deeba Husain
  • + 3 authors

21 March 2021

The purpose of this study was to analyze the association between plasma metabolite levels and dark adaptation (DA) in age-related macular degeneration (AMD). This was a cross-sectional study including patients with AMD (early, intermediate, and late)...

(This article belongs to the Special Issue Lipid and Lipoprotein Metabolism)
  • Article
  • Open Access
6 Citations
4,873 Views
13 Pages

21 March 2021

Alkaloids produced by the bulbs of the Amaryllidaceae are a source of pharmaceutical compounds. The main alkaloid, galantamine, is a reversible acetylcholinesterase inhibitor and allosteric nicotinic receptor modulator, which slows cognitive and func...

  • Review
  • Open Access
62 Citations
7,080 Views
19 Pages

20 March 2021

Plant-beneficial Pseudomonas spp. aggressively colonize the rhizosphere and produce numerous secondary metabolites, such as 2,4-diacetylphloroglucinol (DAPG). DAPG is a phloroglucinol derivative that contributes to disease suppression, thanks to its...

  • Article
  • Open Access
40 Citations
7,220 Views
15 Pages

Untargeted Metabolomics Analysis by UHPLC-MS/MS of Soybean Plant in a Compatible Response to Phakopsora pachyrhizi Infection

  • Evandro Silva,
  • José Perez da Graça,
  • Carla Porto,
  • Rodolpho Martin do Prado,
  • Estela Nunes,
  • Francismar Corrêa Marcelino-Guimarães,
  • Mauricio Conrado Meyer and
  • Eduardo Jorge Pilau

19 March 2021

Phakopsora pachyrhizi is a biotrophic fungus, causer of the disease Asian Soybean Rust, a severe crop disease of soybean and one that demands greater investment from producers. Thus, research efforts to control this disease are still needed. We inves...

(This article belongs to the Section Plant Metabolism)
  • Article
  • Open Access
23 Citations
4,504 Views
19 Pages

Iron-Bound Lipocalin-2 from Tumor-Associated Macrophages Drives Breast Cancer Progression Independent of Ferroportin

  • Christina Mertens,
  • Matthias Schnetz,
  • Claudia Rehwald,
  • Stephan Grein,
  • Eiman Elwakeel,
  • Andreas Weigert,
  • Bernhard Brüne and
  • Michaela Jung

19 March 2021

Macrophages supply iron to the breast tumor microenvironment by enforced secretion of lipocalin-2 (Lcn-2)-bound iron as well as the increased expression of the iron exporter ferroportin (FPN). We aimed at identifying the contribution of each pathway...

(This article belongs to the Section Cell Metabolism)
  • Feature Paper
  • Review
  • Open Access
64 Citations
7,238 Views
28 Pages

Advances and Perspectives in Prostate Cancer Biomarker Discovery in the Last 5 Years through Tissue and Urine Metabolomics

  • Ana Rita Lima,
  • Joana Pinto,
  • Filipa Amaro,
  • Maria de Lourdes Bastos,
  • Márcia Carvalho and
  • Paula Guedes de Pinho

19 March 2021

Prostate cancer (PCa) is the second most diagnosed cancer in men worldwide. For its screening, serum prostate specific antigen (PSA) test has been largely performed over the past decade, despite its lack of accuracy and inability to distinguish indol...

(This article belongs to the Special Issue Cancer Metabolomic 2020)
  • Article
  • Open Access
10 Citations
4,313 Views
17 Pages

Lung Metabolomics Profiling of Congenital Diaphragmatic Hernia in Fetal Rats

  • Maria del Mar Romero-Lopez,
  • Marc Oria,
  • Miki Watanabe-Chailland,
  • Maria Florencia Varela,
  • Lindsey Romick-Rosendale and
  • Jose L. Peiro

18 March 2021

Congenital diaphragmatic hernia (CDH) is characterized by the herniation of abdominal contents into the thoracic cavity during the fetal period. This competition for fetal thoracic space results in lung hypoplasia and vascular maldevelopment that can...

(This article belongs to the Section Endocrinology and Clinical Metabolic Research)
  • Article
  • Open Access
8 Citations
4,559 Views
12 Pages

Alterations in Pattern Baldness According to Sex: Hair Metabolomics Approach

  • Yu Ra Lee,
  • Bark Lynn Lew,
  • Woo Young Sim,
  • Jongki Hong and
  • Bong Chul Chung

18 March 2021

Pattern baldness has been associated with the male hormone, dihydrotestosterone. In this study, we tried to determine how the overall metabolic pathways of pattern baldness differ in patients and in normal controls. Our study aimed to identify altera...

  • Article
  • Open Access
10 Citations
4,665 Views
18 Pages

HPTLC-Based Chemical Profiling: An Approach to Monitor Plant Metabolic Expansion Caused by Fungal Endophytes

  • Luis F. Salomé-Abarca,
  • Cees A. M. J. J. van den Hondel,
  • Özlem Erol,
  • Peter G. L. Klinkhamer,
  • Hye Kyong Kim and
  • Young Hae Choi

17 March 2021

Fungal endophytes isolated from two latex bearing species were chosen as models to show their potential to expand their host plant chemical diversity. Thirty-three strains were isolated from Alstonia scholaris (Apocynaceae) and Euphorbia myrsinites (...

(This article belongs to the Special Issue Metabolomics Methodologies and Applications II)
  • Review
  • Open Access
18 Citations
5,679 Views
12 Pages

Salt Sensation and Regulation

  • Sonali Puri and
  • Youngseok Lee

17 March 2021

Taste sensation and regulation are highly conserved in insects and mammals. Research conducted over recent decades has yielded major advances in our understanding of the molecular mechanisms underlying the taste sensors for a variety of taste sensati...

(This article belongs to the Section Cell Metabolism)
  • Article
  • Open Access
21 Citations
4,624 Views
10 Pages

Does DDI-Predictor Help Pharmacists to Detect Drug-Drug Interactions and Resolve Medication Issues More Effectively?

  • Fanny Moreau,
  • Nicolas Simon,
  • Julia Walther,
  • Mathilde Dambrine,
  • Gaetan Kosmalski,
  • Stéphanie Genay,
  • Maxime Perez,
  • Dominique Lecoutre,
  • Stéphanie Belaiche and
  • Pascal Odou
  • + 3 authors

17 March 2021

The characterization of drug-drug interactions (DDIs) may require the use of several different tools, such as the thesaurus issued by our national health agency (i.e., ANSM), the metabolic pathways table from the Geneva University Hospital (GUH), and...

(This article belongs to the Section Pharmacology and Drug Metabolism)
  • Feature Paper
  • Article
  • Open Access
5 Citations
3,661 Views
11 Pages

17 March 2021

The aim of this study was to evaluate the potential of a miniaturized implantable nuclear magnetic resonance (NMR) coil to acquire in vivo proton NMR spectra in sub-microliter regions of interest and to obtain metabolic information using magnetic res...

(This article belongs to the Special Issue Applications of Magnetic Resonance (MR)-Based Metabolic Imaging in Medicine)
  • Article
  • Open Access
13 Citations
4,574 Views
16 Pages

16 March 2021

Past studies strongly connected stool consistency—as measured by Bristol Stool Scale (BSS)—with microbial gene richness and intestinal inflammation, colonic transit time and metabolome characteristics that are of clinical relevance in numerous gastro...

(This article belongs to the Special Issue Metabolites: From Physiology to Pathology)
  • Article
  • Open Access
15 Citations
5,414 Views
19 Pages

Inhibition of Ganglioside Synthesis Suppressed Liver Cancer Cell Proliferation through Targeting Kinetochore Metaphase Signaling

  • Ting Su,
  • Xian-Yang Qin,
  • Naoshi Dohmae,
  • Feifei Wei,
  • Yutaka Furutani,
  • Soichi Kojima and
  • Wenkui Yu

15 March 2021

The incidence and mortality of liver cancer, mostly hepatocellular carcinoma (HCC), have increased during the last two decades, partly due to persistent inflammation in the lipid-rich microenvironment associated with lifestyle diseases, such as obesi...

(This article belongs to the Special Issue The Emerging Role of Cancer Metabolism in the Development and Progression of Malignancy)
  • Article
  • Open Access
2 Citations
3,272 Views
11 Pages

Comparing Levels of Metabolic Predictors of Coronary Heart Disease between Healthy Lean and Overweight Females

  • Rasha Abu-El-Ruz,
  • Manar E. Abdel-Rahman,
  • Stephen L. Atkin and
  • Mohamed A. Elrayess

15 March 2021

Screening for the metabolomic signature of coronary heart disease (CHD) before disease onset could help in early diagnosis and potentially disease prevention. In this study, the levels of 17 CHD metabolic biomarkers in apparently healthy overweight f...

(This article belongs to the Special Issue Metabolic Profiling of Cardiovascular Disease)
  • Article
  • Open Access
11 Citations
4,599 Views
17 Pages

A Genome-Scale Metabolic Model of Anabaena 33047 to Guide Genetic Modifications to Overproduce Nylon Monomers

  • John I. Hendry,
  • Hoang V. Dinh,
  • Debolina Sarkar,
  • Lin Wang,
  • Anindita Bandyopadhyay,
  • Himadri B. Pakrasi and
  • Costas D. Maranas

15 March 2021

Nitrogen fixing-cyanobacteria can significantly improve the economic feasibility of cyanobacterial production processes by eliminating the requirement for reduced nitrogen. Anabaena sp. ATCC 33047 is a marine, heterocyst forming, nitrogen fixing cyan...

(This article belongs to the Special Issue Genome-Scale Metabolic Models)
  • Article
  • Open Access
12 Citations
4,502 Views
18 Pages

15 March 2021

Inorganic ions, such as sodium and potassium, are present in all biological matrices and are sometimes also added during sample preparation. However, these inorganic ions are known to hamper electrospray ionization -mass spectrometry (ESI-MS) applica...

(This article belongs to the Section Metabolomic Profiling Technology)
  • Review
  • Open Access
25 Citations
5,755 Views
23 Pages

Rapid Evaporative Ionization Mass Spectrometry: A Review on Its Application to the Red Meat Industry with an Australian Context

  • Robert S. Barlow,
  • Adam G. Fitzgerald,
  • Joanne M. Hughes,
  • Kate E. McMillan,
  • Sean C. Moore,
  • Anita L. Sikes,
  • Aarti B. Tobin and
  • Peter J. Watkins

15 March 2021

The red meat supply chain is a complex network transferring product from producers to consumers in a safe and secure way. There can be times when fragmentation can arise within the supply chain, which could be exploited. This risk needs reduction so...

(This article belongs to the Section Food Metabolomics)
  • Article
  • Open Access
11 Citations
4,741 Views
16 Pages

12 March 2021

The Metabolomics Workbench (MW) is a public scientific data repository consisting of experimental data and metadata from metabolomics studies collected with mass spectroscopy (MS) and nuclear magnetic resonance (NMR) analyses. MW has been constantly...

(This article belongs to the Special Issue Data Science in Metabolomics)
  • Article
  • Open Access
22 Citations
4,973 Views
12 Pages

Cross-Species Comparison of Metabolomics to Decipher the Metabolic Diversity in Ten Fruits

  • Jinwei Qi,
  • Kang Li,
  • Yunxia Shi,
  • Yufei Li,
  • Long Dong,
  • Ling Liu,
  • Mingyang Li,
  • Hui Ren,
  • Xianqing Liu and
  • Jie Luo
  • + 1 author

12 March 2021

Fruits provide humans with multiple kinds of nutrients and protect humans against worldwide nutritional deficiency. Therefore, it is essential to understand the nutrient composition of various fruits in depth. In this study, we performed LC-MS-based...

(This article belongs to the Special Issue Metabolomic Analysis in Food Science)
  • Article
  • Open Access
35 Citations
5,696 Views
25 Pages

Metabolomics for Biomarker Discovery: Key Signatory Metabolic Profiles for the Identification and Discrimination of Oat Cultivars

  • Chanel J. Pretorius,
  • Fidele Tugizimana,
  • Paul A. Steenkamp,
  • Lizelle A. Piater and
  • Ian A. Dubery

12 March 2021

The first step in crop introduction—or breeding programmes—requires cultivar identification and characterisation. Rapid identification methods would therefore greatly improve registration, breeding, seed, trade and inspection processes. Metabolomics...

(This article belongs to the Special Issue Metabolomics in Agriculture Volume 2)
  • Article
  • Open Access
22 Citations
5,677 Views
16 Pages

Towards Extending the Detection Window of Gamma-Hydroxybutyric Acid—An Untargeted Metabolomics Study in Serum and Urine Following Controlled Administration in Healthy Men

  • Andrea E. Steuer,
  • Justine Raeber,
  • Fabio Simbuerger,
  • Dario A. Dornbierer,
  • Oliver G. Bosch,
  • Boris B. Quednow,
  • Erich Seifritz and
  • Thomas Kraemer

12 March 2021

In forensic toxicology, gamma-hydroxybutyrate (GHB) still represents one of the most challenging drugs of abuse in terms of analytical detection and interpretation. Given its rapid elimination, the detection window of GHB in common matrices is short...

(This article belongs to the Special Issue Metabolite Analysis in Forensic Toxicology)
  • Article
  • Open Access
23 Citations
4,315 Views
16 Pages

Metabolomic Profiling Reveals Sex Specific Associations with Chronic Obstructive Pulmonary Disease and Emphysema

  • Lucas A. Gillenwater,
  • Katerina J. Kechris,
  • Katherine A. Pratte,
  • Nichole Reisdorph,
  • Irina Petrache,
  • Wassim W. Labaki,
  • Wanda O’Neal,
  • Jerry A. Krishnan,
  • Victor E. Ortega and
  • Russell P. Bowler
  • + 1 author

11 March 2021

Susceptibility and progression of lung disease, as well as response to treatment, often differ by sex, yet the metabolic mechanisms driving these sex-specific differences are still poorly understood. Women with chronic obstructive pulmonary disease (...

(This article belongs to the Special Issue Sex and Gender Differences in Metabolism)
  • Article
  • Open Access
18 Citations
4,609 Views
23 Pages

Metabolites Secreted by Bovine Embryos In Vitro Predict Pregnancies That the Recipient Plasma Metabolome Cannot, and Vice Versa

  • Enrique Gomez,
  • Nuria Canela,
  • Pol Herrero,
  • Adrià Cereto,
  • Isabel Gimeno,
  • Susana Carrocera,
  • David Martin-Gonzalez,
  • Antonio Murillo and
  • Marta Muñoz

11 March 2021

This work describes the use of mass spectrometry-based metabolomics as a non-invasive approach to accurately predict birth prior to embryo transfer (ET) starting from embryo culture media and plasma recipient. Metabolomics was used here as a predicti...

(This article belongs to the Special Issue Metabolomic Applications in Animal Science Volume 2)
  • Review
  • Open Access
49 Citations
6,207 Views
16 Pages

10 March 2021

Colorectal cancer (CRC) is one of the leading cancers that cause cancer-related deaths worldwide. The gut microbiota has been proved to show relevance with colorectal tumorigenesis through microbial metabolites. By decomposing various dietary residue...

(This article belongs to the Special Issue Metabolomics and Its Application in Human Diseases Volume 2)
  • Article
  • Open Access
7 Citations
6,152 Views
19 Pages

Benchmarking Non-Targeted Metabolomics Using Yeast-Derived Libraries

  • Evelyn Rampler,
  • Gerrit Hermann,
  • Gerlinde Grabmann,
  • Yasin El Abiead,
  • Harald Schoeny,
  • Christoph Baumgartinger,
  • Thomas Köcher and
  • Gunda Koellensperger

10 March 2021

Non-targeted analysis by high-resolution mass spectrometry (HRMS) is an essential discovery tool in metabolomics. To date, standardization and validation remain a challenge. Community-wide accepted cost-effective benchmark materials are lacking. In t...

(This article belongs to the Section Metabolomic Profiling Technology)
  • Article
  • Open Access
24 Citations
4,355 Views
10 Pages

Pre-Diagnostic Circulating Metabolites and Colorectal Cancer Risk in the Cancer Prevention Study-II Nutrition Cohort

  • Marjorie L. McCullough,
  • Rebecca A. Hodge,
  • Peter T. Campbell,
  • Victoria L. Stevens and
  • Ying Wang

Untargeted metabolomic studies have identified potential biomarkers of colorectal cancer risk, but evidence is still limited and broadly inconsistent. Among 39,239 Cancer Prevention Study II Nutrition cohort participants who provided a blood sample b...

(This article belongs to the Special Issue Metabolomics Meets Epidemiology)
  • Review
  • Open Access
9 Citations
4,240 Views
22 Pages

Automatic 1D 1H NMR Metabolite Quantification for Bioreactor Monitoring

  • Roy Chih Chung Wang,
  • David A. Campbell,
  • James R. Green and
  • Miroslava Čuperlović-Culf

High-throughput metabolomics can be used to optimize cell growth for enhanced production or for monitoring cell health in bioreactors. It has applications in cell and gene therapies, vaccines, biologics, and bioprocessing. NMR metabolomics is a metho...

(This article belongs to the Section Cell Metabolism)
  • Article
  • Open Access
29 Citations
3,668 Views
15 Pages

Sex Affects Human Premature Neonates’ Blood Metabolome According to Gestational Age, Parenteral Nutrition, and Caffeine Treatment

  • Marianna Caterino,
  • Margherita Ruoppolo,
  • Michele Costanzo,
  • Lucia Albano,
  • Daniela Crisci,
  • Giovanni Sotgiu,
  • Laura Saderi,
  • Andrea Montella,
  • Flavia Franconi and
  • Ilaria Campesi

Prematurity is the leading cause of neonatal deaths and high economic costs; it depends on numerous biological and social factors, and is highly prevalent in males. Several factors can affect the metabolome of premature infants. Accordingly, the aim...

(This article belongs to the Special Issue Sex and Gender Differences in Metabolism)
  • Article
  • Open Access
16 Citations
4,111 Views
24 Pages

Investigating Different Forms of Hydrogen Sulfide in Cerebrospinal Fluid of Various Neurological Disorders

  • Viviana Greco,
  • Cristina Neri,
  • Damiana Pieragostino,
  • Alida Spalloni,
  • Silvia Persichilli,
  • Matteo Gastaldi,
  • Nicola B. Mercuri,
  • Patrizia Longone and
  • Andrea Urbani

Over the past 30 years a considerable amount of data has accumulated on the multifaceted role of hydrogen sulfide (H2S) in the central nervous system. Depending on its concentrations, H2S has opposite actions, ranging from neuromodulator to neurotoxi...

(This article belongs to the Section Endocrinology and Clinical Metabolic Research)
  • Communication
  • Open Access
4 Citations
2,891 Views
10 Pages

Leaky Gut as a Potential Culprit for the Paradoxical Dysglycemic Response to Gastric Bypass-Associated Ileal Microbiota

  • Mohammed K. Hankir,
  • Florian Seyfried,
  • Isabel N. Schellinger,
  • Nicolas Schlegel and
  • Tulika Arora

Altered host-intestinal microbiota interactions are increasingly implicated in the metabolic benefits of Roux-en-Y gastric bypass (RYGB) surgery. We previously found, however, that RYGB-associated ileal microbiota can paradoxically impair host glycem...

(This article belongs to the Special Issue Metabolic Health and Weight II)
  • Review
  • Open Access
30 Citations
5,955 Views
21 Pages

YAP and TAZ Mediators at the Crossroad between Metabolic and Cellular Reprogramming

  • Giorgia Di Benedetto,
  • Silvia Parisi,
  • Tommaso Russo and
  • Fabiana Passaro

Cell reprogramming can either refer to a direct conversion of a specialized cell into another or to a reversal of a somatic cell into an induced pluripotent stem cell (iPSC). It implies a peculiar modification of the epigenetic asset and gene regulat...

(This article belongs to the Section Cell Metabolism)
  • Review
  • Open Access
103 Citations
10,560 Views
15 Pages

Insulin Resistance across the Spectrum of Nonalcoholic Fatty Liver Disease

  • Angelo Armandi,
  • Chiara Rosso,
  • Gian Paolo Caviglia and
  • Elisabetta Bugianesi

Insulin resistance (IR) is defined as a lower-than-expected response to insulin action from target tissues, leading to the development of type 2 diabetes through the impairment of both glucose and lipid metabolism. IR is a common condition in subject...

(This article belongs to the Collection Insulin Resistance in the 2020's)
  • Review
  • Open Access
128 Citations
13,374 Views
34 Pages

Dynamic changes in circulating and tissue metabolites and lipids occur in response to exercise-induced cellular and whole-body energy demands to maintain metabolic homeostasis. The metabolome and lipidome in a given biological system provides a molec...

(This article belongs to the Special Issue 10th Anniversary of Metabolites: The Changing Landscape of Metabolomics)
  • Article
  • Open Access
12 Citations
3,993 Views
15 Pages

Metabolic Changes by Wine Flor-Yeasts with Gluconic Acid as the Sole Carbon Source

  • Minami Ogawa,
  • Jaime Moreno-García,
  • Lucy C. M. Joseph,
  • Juan C. Mauricio,
  • Juan Moreno and
  • Teresa García-Martínez

Gluconic acid consumption under controlled conditions by a Saccharomyces cerevisiae flor yeast was studied in artificial media. Gluconic acid was the sole carbon source and the compounds derived from this metabolism were tracked by endo-metabolomic a...

(This article belongs to the Section Microbiology and Ecological Metabolomics)
  • Article
  • Open Access
6 Citations
4,513 Views
12 Pages

OS-PCA: Orthogonal Smoothed Principal Component Analysis Applied to Metabolome Data

  • Hiroyuki Yamamoto,
  • Yasumune Nakayama and
  • Hiroshi Tsugawa

Principal component analysis (PCA) has been widely used in metabolomics. However, it is not always possible to detect phenotype-associated principal component (PC) scores. Previously, we proposed a smoothed PCA for samples acquired with a time course...

(This article belongs to the Special Issue Development and Application of Statistical Methods for Analyzing Metabolomics Data)
  • Article
  • Open Access
26 Citations
5,156 Views
20 Pages

Analyzing Mass Spectrometry Imaging Data of 13C-Labeled Phospholipids in Camelina sativa and Thlaspi arvense (Pennycress) Embryos

  • Trevor B. Romsdahl,
  • Shrikaar Kambhampati,
  • Somnath Koley,
  • Umesh P. Yadav,
  • Ana Paula Alonso,
  • Doug K. Allen and
  • Kent D. Chapman

The combination of 13C-isotopic labeling and mass spectrometry imaging (MSI) offers an approach to analyze metabolic flux in situ. However, combining isotopic labeling and MSI presents technical challenges ranging from sample preparation, label incor...

(This article belongs to the Section Advances in Metabolomics)
  • Article
  • Open Access
10 Citations
5,145 Views
15 Pages

Developing a Yeast Platform Strain for an Enhanced Taxadiene Biosynthesis by CRISPR/Cas9

  • Joseph C. Utomo,
  • Fabio C. Chaves,
  • Philippe Bauchart,
  • Vincent J. J. Martin and
  • Dae-Kyun Ro

Paclitaxel is an important diterpenoid commonly used as an anticancer drug. Although the paclitaxel biosynthetic pathway has been mostly revealed, some steps remain to be elucidated. The difficulties in plant transformations and the scarcity of the p...

(This article belongs to the Section Plant Metabolism)
  • Article
  • Open Access
57 Citations
4,864 Views
22 Pages

Effects of Long-Term Nitrogen Fertilization on the Formation of Metabolites Related to Tea Quality in Subtropical China

  • Yuzhen Chen,
  • Feng Wang,
  • Zhidan Wu,
  • Fuying Jiang,
  • Wenquan Yu,
  • Jie Yang,
  • Jiaming Chen,
  • Guotai Jian,
  • Zhiming You and
  • Lanting Zeng

As a main agronomic intervention in tea cultivation, nitrogen (N) application is useful to improve tea yield and quality. However, the effects of N application on the formation of tea quality-related metabolites have not been fully studied, especiall...

(This article belongs to the Special Issue Plant Metabolomics II)
  • Article
  • Open Access
25 Citations
5,076 Views
17 Pages

Quantitative Assessment of Occipital Metabolic and Energetic Changes in Parkinson’s Patients, Using In Vivo 31P MRS-Based Metabolic Imaging at 7T

  • Xiao-Hong Zhu,
  • Byeong-Yeul Lee,
  • Paul Tuite,
  • Lisa Coles,
  • Abhishek G. Sathe,
  • Chi Chen,
  • Jim Cloyd,
  • Walter C. Low,
  • Clifford J. Steer and
  • Wei Chen

Abnormal energy metabolism associated with mitochondrial dysfunction is thought to be a major contributor to the progression of neurodegenerative diseases such as Parkinson’s disease (PD). Recent advancements in the field of magnetic resonance (MR) b...

(This article belongs to the Special Issue Applications of Magnetic Resonance (MR)-Based Metabolic Imaging in Medicine)
  • Article
  • Open Access
43 Citations
3,804 Views
13 Pages

Lipidomics Revealed Aberrant Metabolism of Lipids Including FAHFAs in Renal Tissue in the Progression of Lupus Nephritis in a Murine Model

  • Changfeng Hu,
  • Yu Du,
  • Xiaofen Xu,
  • Haichang Li,
  • Qiao Duan,
  • Zhijun Xie,
  • Chengping Wen and
  • Xianlin Han

27 February 2021

Lupus nephritis (LN) is an inflammatory renal disease of patients with systemic lupus erythematosus with lots of immune complexes deposited in kidneys. Accumulated studies have demonstrated the close relationships among dyslipidaemia, inflammation, a...

(This article belongs to the Section Lipid Metabolism)
  • Article
  • Open Access
3 Citations
2,768 Views
17 Pages

27 February 2021

Alkamides have been observed to interact in different ways in several superior organisms and have been used in traditional medicine in many countries e.g., to relieve pain. Previous studies showed that affinin when applied to other plant species indu...

(This article belongs to the Section Plant Metabolism)
  • Article
  • Open Access
13 Citations
4,351 Views
19 Pages

Structure Assignment of Seized Products Containing Cathinone Derivatives Using High Resolution Analytical Techniques

  • João L. Gonçalves,
  • Vera L. Alves,
  • Joselin Aguiar,
  • Maria J. Caldeira,
  • Helena M. Teixeira and
  • José S. Câmara

27 February 2021

The innovation of the new psychoactive substances (NPS) market requires the rapid identification of new substances that can be a risk to public health, in order to reduce the damage from their use. Twelve seized products suspected to contain illicit...

(This article belongs to the Special Issue Metabolite Analysis in Forensic Toxicology)

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Metabolites - ISSN 2218-1989