Honey is a natural food product which in traditional production represents a clear example of the “farm-to-table” principle, as it excludes any processing of the original product. This study proposes an analytical approach for determining 30 most frequently determined chemical elements (Ag, Al, As, B, Ba, Bi, Ca, Cd, Co, Cr, Cs, Cu, Ga, In, Fe, K, Li, Mg, Mn, Na, Ni, P, Pb, Rb, S, Se, Sr, Te, V, and Zn) in honey, emphasizing the use of a relatively large sample mass to overcome sample heterogeneity and ensure accurate and reliable results. About 31 linden and 16 rapeseed honey samples from different Bulgarian regions were analyzed. Pollen analysis data showed that pollen content ranged from 30 to 78% for linden and 30 to 93% for rapeseed honey. The results identify a group of elements—K, Ca, Mg, Sr, and Rb—whose concentrations show statistically significant dependence on the floral origin and purity of the honey. Based on these findings, these elements are proposed as potential markers for identifying the botanical origin of honey. Furthermore, macronutrients and micronutrients (P, S, B, Cu, Fe, Mn, and Zn), which are generally subject to homeostatic regulation, as well as micro-elements (Al, As, Cd, Co, Cr, and Pb), which are more strongly influenced by environmental factors, showed limited discriminatory potential and no clear correlation with floral purity and botanical origin. Therefore, they should not be used as criteria when assessing the botanical origin of honey, but rather as indicators of environmental pollution and potential quality or safety concerns. Overall, the research contributes to improving the reliability of botanical classification of honey by combining robust analytical methodology with statistically validated elemental markers, while also distinguishing between natural compositional features and contamination-related signals.
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