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Genes, Volume 10, Issue 3

March 2019 - 73 articles

Cover Story: The unexpected lysis of a 1 m3 culture of Halobacterium salinarum strain S9 was found to be caused by a novel caudovirus, pictured in the right panel of the diagram. We named it ChaoS9, partly because of the damage it had caused, and sequenced its 55,145 bp dsDNA genome. The closest relatives were found to be the myohaloviruses phiH1 and phiCh1, both of which infect extremely halophilic archaea (Class Halobacteria). Strong conservation of the tail genes contrasts with major differences of the head genes. Even more surprising is the similarity of the major capsid protein with that of tailed halovirus HHTV-1. Presumably, the evolutionary history of ChaoS9 exemplifies widespread recombination between tailed haloviruses. Another curious feature are many, closely matching CRISPR spacers to ChaoS9 in metagenomic data from hypersaline Antarctic lakes. View this paper.
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Articles (73)

  • Article
  • Open Access
8 Citations
4,073 Views
19 Pages

26 March 2019

Epigenetic modifications have an important role to explain part of the intra- and inter-species variation in gene expression. They also have a role in the control of transposable elements (TEs) whose activity may have a significant impact on genome e...

  • Review
  • Open Access
16 Citations
6,795 Views
18 Pages

The Role of 3′ to 5′ Reverse RNA Polymerization in tRNA Fidelity and Repair

  • Allan W. Chen,
  • Malithi I. Jayasinghe,
  • Christina Z. Chung,
  • Bhalchandra S. Rao,
  • Rosan Kenana,
  • Ilka U. Heinemann and
  • Jane E. Jackman

26 March 2019

The tRNAHis guanylyltransferase (Thg1) superfamily includes enzymes that are found in all three domains of life that all share the common ability to catalyze the 3′ to 5′ synthesis of nucleic acids. This catalytic activity, which is the r...

  • Article
  • Open Access
5 Citations
4,535 Views
9 Pages

The Interaction between Sex and Hyperlipidemia on Gout Risk Is Modulated by HLA-B Polymorphic Variants in Adult Taiwanese

  • Tsui-Wen Hsu,
  • Pei-Shyuan Lee,
  • Oswald Ndi Nfor,
  • Chia-long Lee,
  • Pei-Hsin Chen,
  • Disline Manli Tantoh,
  • Long-Yau Lin,
  • Ming-Chih Chou,
  • Yu-Chen Lee and
  • Yung-Po Liaw

25 March 2019

The effects of genetic variants on the interaction between hyperlipidemia and sex have not been investigated among gout patients in Taiwan. Using Taiwan Biobank and the National Health Insurance Research Database (NHIRD), we examined hyperlipidemia,...

  • Article
  • Open Access
8 Citations
4,837 Views
15 Pages

Golgi Oncoprotein GOLPH3 Gene Expression Is Regulated by Functional E2F and CREB/ATF Promoter Elements

  • Beatriz Peñalver-González,
  • Jon Vallejo-Rodríguez,
  • Gartze Mentxaka,
  • Asier Fullaondo,
  • Ainhoa Iglesias-Ara,
  • Seth J. Field and
  • Ana M. Zubiaga

25 March 2019

The Golgi organelle duplicates its protein and lipid content to segregate evenly between two daughter cells after mitosis. However, how Golgi biogenesis is regulated during interphase remains largely unknown. Here we show that messenger RNA (mRNA) ex...

  • Article
  • Open Access
53 Citations
7,902 Views
13 Pages

Food Tracking Perspective: DNA Metabarcoding to Identify Plant Composition in Complex and Processed Food Products

  • Antonia Bruno,
  • Anna Sandionigi,
  • Giulia Agostinetto,
  • Lorenzo Bernabovi,
  • Jessica Frigerio,
  • Maurizio Casiraghi and
  • Massimo Labra

25 March 2019

One of the main goals of the quality control evaluation is to identify contaminants in raw material, or contamination after a food is processed and before it is placed on the market. During the treatment processes, contamination, both accidental and...

  • Review
  • Open Access
193 Citations
19,524 Views
29 Pages

MYC Oncogene Contributions to Release of Cell Cycle Brakes

  • Lucía García-Gutiérrez,
  • María Dolores Delgado and
  • Javier León

22 March 2019

Promotion of the cell cycle is a major oncogenic mechanism of the oncogene c-MYC (MYC). MYC promotes the cell cycle by not only activating or inducing cyclins and CDKs but also through the downregulation or the impairment of the activity of a set of...

  • Article
  • Open Access
3 Citations
4,888 Views
10 Pages

22 March 2019

The complex evolution of chloroplasts in microalgae has resulted in highly diverse pigment profiles. Freshwater raphidophytes, for example, display a very different pigment composition to marine raphidophytes. To investigate potential differences in...

  • Article
  • Open Access
83 Citations
9,829 Views
15 Pages

Group Lasso Regularized Deep Learning for Cancer Prognosis from Multi-Omics and Clinical Features

  • Gangcai Xie,
  • Chengliang Dong,
  • Yinfei Kong,
  • Jiang F. Zhong,
  • Mingyao Li and
  • Kai Wang

21 March 2019

Accurate prognosis of patients with cancer is important for the stratification of patients, the optimization of treatment strategies, and the design of clinical trials. Both clinical features and molecular data can be used for this purpose, for insta...

  • Article
  • Open Access
14 Citations
6,145 Views
27 Pages

The Origin of a Coastal Indigenous Horse Breed in China Revealed by Genome-Wide SNP Data

  • Hongying Ma,
  • Sheng Wang,
  • Guorong Zeng,
  • Jintu Guo,
  • Minghao Guo,
  • Xianggui Dong,
  • Guoying Hua,
  • Yu Liu,
  • Min Wang and
  • Yao Ling
  • + 3 authors

21 March 2019

The Jinjiang horse is a unique Chinese indigenous horse breed distributed in the southern coastal areas, but the ancestry of Jinjiang horses is not well understood. Here, we used Equine SNP70 Bead Array technology to genotype 301 horses representing...

  • Article
  • Open Access
28 Citations
4,827 Views
14 Pages

21 March 2019

Hot spot residues at protein–RNA complexes are vitally important for investigating the underlying molecular recognition mechanism. Accurately identifying protein–RNA binding hot spots is critical for drug designing and protein engineering...

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Genes - ISSN 2073-4425