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Genes, Volume 10, Issue 3

March 2019 - 73 articles

Cover Story: The unexpected lysis of a 1 m3 culture of Halobacterium salinarum strain S9 was found to be caused by a novel caudovirus, pictured in the right panel of the diagram. We named it ChaoS9, partly because of the damage it had caused, and sequenced its 55,145 bp dsDNA genome. The closest relatives were found to be the myohaloviruses phiH1 and phiCh1, both of which infect extremely halophilic archaea (Class Halobacteria). Strong conservation of the tail genes contrasts with major differences of the head genes. Even more surprising is the similarity of the major capsid protein with that of tailed halovirus HHTV-1. Presumably, the evolutionary history of ChaoS9 exemplifies widespread recombination between tailed haloviruses. Another curious feature are many, closely matching CRISPR spacers to ChaoS9 in metagenomic data from hypersaline Antarctic lakes. View this paper.
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Articles (73)

  • Article
  • Open Access
45 Citations
7,110 Views
15 Pages

Droplet Digital PCR Detection of the Erythropoietin Transgene from Horse Plasma and Urine for Gene-Doping Control

  • Teruaki Tozaki,
  • Aoi Ohnuma,
  • Masaki Takasu,
  • Mio Kikuchi,
  • Hironaga Kakoi,
  • Kei-ichi Hirota,
  • Kanichi Kusano and
  • Shun-ichi Nagata

21 March 2019

Indiscriminate genetic manipulation to improve athletic ability is a major threat to human sports and the horseracing industry, in which methods involving gene-doping, such as transgenesis, should be prohibited to ensure fairness. Therefore, developm...

  • Article
  • Open Access
17 Citations
7,392 Views
14 Pages

Chicken Embryonic-Stem Cells Are Permissive to Poxvirus Recombinant Vaccine Vectors

  • Efstathios S. Giotis,
  • Guillaume Montillet,
  • Bertrand Pain and
  • Michael A. Skinner

20 March 2019

The discovery of mammalian pluripotent embryonic stem cells (ESC) has revolutionised cell research and regenerative medicine. More recently discovered chicken ESC (cESC), though less intensively studied, are increasingly popular as vaccine substrates...

  • Review
  • Open Access
120 Citations
13,441 Views
17 Pages

Challenges in the Integration of Omics and Non-Omics Data

  • Evangelina López de Maturana,
  • Lola Alonso,
  • Pablo Alarcón,
  • Isabel Adoración Martín-Antoniano,
  • Silvia Pineda,
  • Lucas Piorno,
  • M. Luz Calle and
  • Núria Malats

20 March 2019

Omics data integration is already a reality. However, few omics-based algorithms show enough predictive ability to be implemented into clinics or public health domains. Clinical/epidemiological data tend to explain most of the variation of health-rel...

  • Article
  • Open Access
71 Citations
7,711 Views
18 Pages

A Novel Insight into Functional Divergence of the MST Gene Family in Rice Based on Comprehensive Expression Patterns

  • Xiaolong Deng,
  • Baoguang An,
  • Hua Zhong,
  • Jing Yang,
  • Weilong Kong and
  • Yangsheng Li

20 March 2019

Sugars are critical for plant growth and development as suppliers of carbon and energy, as signal molecules, or as solute molecules for osmotic homeostasis. Monosaccharide transporter (MST) genes are involved in various processes of plant growth and...

  • Article
  • Open Access
19 Citations
6,132 Views
13 Pages

H3K27me3 Depletion during Differentiation Promotes Myogenic Transcription in Porcine Satellite Cells

  • Sheng Wang,
  • Yan Sun,
  • Ruimin Ren,
  • Junhui Xie,
  • Xiaohuan Tian,
  • Shuhong Zhao,
  • Xinyun Li and
  • Jianhua Cao

19 March 2019

Background: Porcine skeletal muscle satellite cells play important roles in myogenesis and muscle regeneration. Integrated analysis of transcriptome and histone modifications would reveal epigenomic roles in promoting myogenic differentiation in swin...

  • Review
  • Open Access
27 Citations
6,763 Views
22 Pages

19 March 2019

Complete genome duplication in every cell cycle is fundamental for genome stability and cell survival. However, chromosome replication is frequently challenged by obstacles that impede DNA replication fork (RF) progression, which subsequently causes...

  • Article
  • Open Access
32 Citations
8,721 Views
19 Pages

The Patchy Distribution of Restriction–Modification System Genes and the Conservation of Orphan Methyltransferases in Halobacteria

  • Matthew S. Fullmer,
  • Matthew Ouellette,
  • Artemis S. Louyakis,
  • R. Thane Papke and
  • Johann Peter Gogarten

19 March 2019

Restriction–modification (RM) systems in bacteria are implicated in multiple biological roles ranging from defense against parasitic genetic elements, to selfish addiction cassettes, and barriers to gene transfer and lineage homogenization. In...

  • Article
  • Open Access
14 Citations
5,542 Views
11 Pages

Development of a DNA Barcoding-Like Approach to Detect Mustard Allergens in Wheat Flours

  • Jessica Frigerio,
  • Roberta Pellesi,
  • Valerio Mezzasalma,
  • Fabrizio De Mattia,
  • Andrea Galimberti,
  • Francesca Lambertini,
  • Michele Suman,
  • Sandro Zanardi,
  • Andrea Leporati and
  • Massimo Labra

19 March 2019

The spread of food allergens is a topic of global importance due to its impact on public health. National and International regulations ask food producers and manufacturers to declare product compositions on the label, especially in case of processed...

  • Review
  • Open Access
23 Citations
9,152 Views
11 Pages

19 March 2019

The cystic fibrosis transmembrane conductance regulator (CFTR) gene is an attractive target for gene editing approaches, which may yield novel therapeutic approaches for genetic diseases such as cystic fibrosis (CF). However, for gene editing to be e...

  • Article
  • Open Access
89 Citations
7,722 Views
14 Pages

A Comparison Between Two Assays for Measuring Seminal Oxidative Stress and their Relationship with Sperm DNA Fragmentation and Semen Parameters

  • Sheryl T. Homa,
  • Anna M. Vassiliou,
  • Jesse Stone,
  • Aideen P. Killeen,
  • Andrew Dawkins,
  • Jingyi Xie,
  • Farley Gould and
  • Jonathan W. A. Ramsay

19 March 2019

Oxidative stress (OS) is a significant cause of DNA fragmentation and is associated with poor embryo development and recurrent miscarriage. The aim of this study was to compare two different methods for assessing seminal OS and their ability to predi...

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Genes - ISSN 2073-4425