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14 Results Found

  • Article
  • Open Access
4 Citations
2,537 Views
15 Pages

Diversity of Parallel Guanine Quadruplexes Induced by Guanine Substitutions

  • Klára Bednářová,
  • Michaela Vorlíčková and
  • Daniel Renčiuk

25 August 2020

Recently, we reported an inhibitory effect of guanine substitutions on the conformational switch from antiparallel to parallel quadruplexes (G4) induced by dehydrating agents. As a possible cause, we proposed a difference in the sensitivity of parall...

  • Article
  • Open Access
3 Citations
3,999 Views
13 Pages

Design and Properties of Ligand-Conjugated Guanine Oligonucleotides for Recovery of Mutated G-Quadruplexes

  • Shuntaro Takahashi,
  • Boris Chelobanov,
  • Ki Tae Kim,
  • Byeang Hyean Kim,
  • Dmitry Stetsenko and
  • Naoki Sugimoto

6 December 2018

The formation of a guanine quadruplex DNA structure (G4) is known to repress the expression of certain cancer-related genes. Consequently, a mutated G4 sequence can affect quadruplex formation and induce cancer progression. In this study, we develope...

  • Article
  • Open Access
2,145 Views
16 Pages

Immunostimulatory Effects of Guanine-Quadruplex Topologies as Scaffolds for CpG Oligodeoxynucleotides

  • Soumitra Pathak,
  • Nguyen Bui Thao Le,
  • Taiji Oyama,
  • Yusuke Odahara,
  • Atsuya Momotake,
  • Kazunori Ikebukuro,
  • Chiho Kataoka-Hamai,
  • Chiaki Yoshikawa,
  • Kohsaku Kawakami and
  • Tomohiko Yamazaki
  • + 1 author

10 January 2025

Synthetic cytosine-phosphate-guanine oligodeoxynucleotides (CpG ODNs) are promising candidates for vaccine adjuvants, because they activate immune responses through the Toll-like receptor 9 (TLR9) pathway. However, unmodified CpG ODNs are quickly deg...

  • Article
  • Open Access
4 Citations
4,444 Views
16 Pages

21 October 2020

Bone remodeling is a fine-tuned process principally regulated by a cascade triggered by interaction of receptor activator of NF-κB (RANK) and RANK ligand (RANKL). Excessive activity of the RANKL gene leads to increased bone resorption and can i...

  • Article
  • Open Access
15 Citations
5,716 Views
23 Pages

Intensive Distribution of G2-Quaduplexes in the Pseudorabies Virus Genome and Their Sensitivity to Cations and G-Quadruplex Ligands

  • Hui Deng,
  • Bowen Gong,
  • Zhiquan Yang,
  • Zhen Li,
  • Huan Zhou,
  • Yashu Zhang,
  • Xiaohui Niu,
  • Sisi Liu and
  • Dengguo Wei

21 February 2019

Guanine-rich sequences in the genomes of herpesviruses can fold into G-quadruplexes. Compared with the widely-studied G3-quadruplexes, the dynamic G2-quadruplexes are more sensitive to the cell microenvironment, but they attract less attention. Pseud...

  • Article
  • Open Access
4 Citations
2,924 Views
11 Pages

Replication Control of Human Telomere G-Quadruplex DNA by G-Quadruplex Ligands Dependent on Solution Environment

  • Shuntaro Takahashi,
  • Sudipta Bhowmik,
  • Shinobu Sato,
  • Shigeori Takenaka and
  • Naoki Sugimoto

7 April 2022

The human telomere region is known to contain guanine-rich repeats and form a guanine-quadruplex (G4) structure. As telomeres play a role in the regulation of cancer progression, ligands that specifically bind and stabilize G4 have potential therapeu...

  • Article
  • Open Access
7 Citations
4,340 Views
16 Pages

Spectroscopic Characterization of Mitochondrial G-Quadruplexes

  • Sara Illodo,
  • Cibrán Pérez-González,
  • Ramiro Barcia,
  • Flor Rodríguez-Prieto,
  • Wajih Al-Soufi and
  • Mercedes Novo

Guanine quadruplexes (G4s) are highly polymorphic four-stranded structures formed within guanine-rich DNA and RNA sequences that play a crucial role in biological processes. The recent discovery of the first G4 structures within mitochondrial DNA has...

  • Feature Paper
  • Article
  • Open Access
18 Citations
5,592 Views
26 Pages

5 September 2018

The anticancer drug daunomycin exerts its influence by multiple strategies of action to interfere with gene functioning. Besides inhibiting DNA/RNA synthesis and topoisomerase-II, it affects the functional pathway of telomere maintenance by the telom...

  • Article
  • Open Access
12 Citations
3,497 Views
18 Pages

Fighting the Huntington’s Disease with a G-Quadruplex-Forming Aptamer Specifically Binding to Mutant Huntingtin Protein: Biophysical Characterization, In Vitro and In Vivo Studies

  • Claudia Riccardi,
  • Federica D’Aria,
  • Filomena Anna Digilio,
  • Maria Rosaria Carillo,
  • Jussara Amato,
  • Dominga Fasano,
  • Laura De Rosa,
  • Simona Paladino,
  • Mariarosa Anna Beatrice Melone and
  • Concetta Giancola
  • + 1 author

A set of guanine-rich aptamers able to preferentially recognize full-length huntingtin with an expanded polyglutamine tract has been recently identified, showing high efficacy in modulating the functions of the mutated protein in a variety of cell ex...

  • Article
  • Open Access
1,735 Views
13 Pages

Kanamycin and G-Quadruplexes: An Exploration of Binding Interactions

  • Gianmarco Gualtieri,
  • Emanuele Liborio Citriniti,
  • Roberta Rocca,
  • Valentina Arciuolo,
  • Jussara Amato,
  • Antonio Randazzo and
  • Stefano Alcaro

16 December 2024

G-quadruplexes (G4s) are distinctive four-stranded nucleic acid structures formed by guanine-rich sequences, making them attractive targets for drug repurposing efforts. Modulating their stability and function holds promise for treating diseases like...

  • Article
  • Open Access
5 Citations
2,230 Views
17 Pages

Crosstalk between G-Quadruplexes and Dnmt3a-Mediated Methylation of the c-MYC Oncogene Promoter

  • Alexander V. Sergeev,
  • Andrei G. Loiko,
  • Adelya I. Genatullina,
  • Alexander S. Petrov,
  • Elena A. Kubareva,
  • Nina G. Dolinnaya and
  • Elizaveta S. Gromova

The methylation of cytosines at CpG sites in DNA, carried out de novo by DNA methyltransferase Dnmt3a, is a basic epigenetic modification involved in gene regulation and genome stability. Aberrant CpG methylation in gene promoters leads to oncogenesi...

  • Article
  • Open Access
1 Citations
2,561 Views
14 Pages

The G-quadruplex (GQ)-forming hexanucleotide repeat expansion (HRE) in the C9orf72 (C9) gene has been found to be the most common cause of amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD) (collectively, C9ALS/FTD), implying the g...

  • Article
  • Open Access
6 Citations
2,861 Views
13 Pages

27 December 2021

Guanine-rich oligonucleotides (GROs) can self-associate to form G-quadruplex (G4) structures that have been extensively studied in vitro. To translate the G4 study from in vitro to in live cells, here fluorescence lifetime imaging microscopy (FLIM) o...

  • Article
  • Open Access
6 Citations
2,903 Views
16 Pages

4 November 2021

Pseudorabies virus (PRV) is the causative agent of Aujeszky’s disease, which still causes large economic losses for the swine industry. Therefore, it is urgent to find a new strategy to prevent and control PRV infection. Previous studies have proven...