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9 Results Found

  • Tutorial
  • Open Access
2 Citations
6,189 Views
9 Pages

24 November 2021

This is the world’s first tutorial article on Python Packaging for beginners and practitioners for translational medicine or medicine in general. This tutorial will allow researchers to demonstrate and showcase their tools on PyPI packages arou...

  • Article
  • Open Access
13 Citations
6,855 Views
13 Pages

DiGriPy is a newly developed Python tool for the simulation of district heating networks published as open-source software in GitHub and offered as a Python package on PyPI. It enables the user to easily build a network model, run large-scale demand...

  • Article
  • Open Access
9 Citations
4,181 Views
16 Pages

12 March 2021

The Metabolomics Workbench (MW) is a public scientific data repository consisting of experimental data and metadata from metabolomics studies collected with mass spectroscopy (MS) and nuclear magnetic resonance (NMR) analyses. MW has been constantly...

  • Article
  • Open Access
255 Views
22 Pages

15 January 2026

Background: The Metabolomics Workbench (MW) is a public scientific data repository consisting of experimental data and metadata from metabolomics studies collected with mass spectroscopy (MS) and nuclear magnetic resonance (NMR) analyses. Although no...

  • Article
  • Open Access
4 Citations
2,408 Views
10 Pages

ct2vl: A Robust Public Resource for Converting SARS-CoV-2 Ct Values to Viral Loads

  • Elliot D. Hill,
  • Fazilet Yilmaz,
  • Cody Callahan,
  • Alex Morgan,
  • Annie Cheng,
  • Jasper Braun and
  • Ramy Arnaout

30 June 2024

The amount of SARS-CoV-2 in a sample is often measured using Ct values. However, the same Ct value may correspond to different viral loads on different platforms and assays, making them difficult to compare from study to study. To address this proble...

  • Article
  • Open Access
6 Citations
4,035 Views
12 Pages

26 February 2019

Studying parallel and convergent amino acid replacements in protein evolution is frequently used to assess adaptive evolution at the molecular level. Identifying parallel and convergent replacements involves multiple steps and computational routines,...

  • Article
  • Open Access
12 Citations
4,417 Views
11 Pages

GReNaDIne: A Data-Driven Python Library to Infer Gene Regulatory Networks from Gene Expression Data

  • Pauline Schmitt,
  • Baptiste Sorin,
  • Timothée Frouté,
  • Nicolas Parisot,
  • Federica Calevro and
  • Sergio Peignier

20 January 2023

Context: Inferring gene regulatory networks (GRN) from high-throughput gene expression data is a challenging task for which different strategies have been developed. Nevertheless, no ever-winning method exists, and each method has its advantages, int...

  • Feature Paper
  • Article
  • Open Access
60 Citations
7,019 Views
19 Pages

Synthesis and Characterization of Bio-Based Polyesters: Poly(2-methyl-1,3-propylene-2,5-furanoate), Poly(isosorbide-2,5-furanoate), Poly(1,4-cyclohexanedimethylene-2,5-furanoate)

  • Zoi Terzopoulou,
  • Nejib Kasmi,
  • Vasilios Tsanaktsis,
  • Nikolaos Doulakas,
  • Dimitrios N. Bikiaris,
  • Dimitris S. Achilias and
  • George Z. Papageorgiou

14 July 2017

In the present study, three new biobased furanoate polyesters with potential use in food packaging applications, named poly(isosorbide furanoate) (PIsF), poly(methyl-propylene furanoate) (PMePF) and poly(1,4-cyclohexane-dimethylene 2,5-furanoate) (PC...