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Predicting Molecular Biomarkers in WHO Grade 4 Glioma via APTw‑MRI
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Applications of Advanced Imaging for Radiotherapy Planning and Response Assessment in the Central Nervous System
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EBUS-Based Lung Cancer Diagnosis Using Multi-Scale and Multi-Feature Fusion
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Assessing Acute DWI Lesions in Clinically Diagnosed TIA: Insights from a Cohort Study in Cluj, Romania
Journal Description
Tomography
Tomography
is an international, peer-reviewed open access journal on imaging technologies published monthly online by MDPI (from Volume 7 Issue 1-2021).
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubMed, MEDLINE, PMC, and other databases.
- Journal Rank: JCR - Q2 (Radiology, Nuclear Medicine and Medical Imaging)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 26.7 days after submission; acceptance to publication is undertaken in 2.7 days (median values for papers published in this journal in the first half of 2025).
- Recognition of Reviewers: APC discount vouchers, optional signed peer review, and reviewer names published annually in the journal.
Impact Factor:
2.2 (2024);
5-Year Impact Factor:
2.2 (2024)
Latest Articles
Correlations of Lumbar Interspinous Distance with Neuroforaminal Dimensions, Disc Space Height, and Patient Demographic Factors
Tomography 2025, 11(9), 100; https://doi.org/10.3390/tomography11090100 - 27 Aug 2025
Abstract
Background/Objectives: A thorough understanding of spinal anatomy is essential for diagnostic assessment and surgical intervention. Interspinous distance (ISD), neuroforaminal dimensions (NFDs), and disc space height (DSH) have each been studied separately; however, their interrelationship remains unstudied. Given the use of interspinous implants as
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Background/Objectives: A thorough understanding of spinal anatomy is essential for diagnostic assessment and surgical intervention. Interspinous distance (ISD), neuroforaminal dimensions (NFDs), and disc space height (DSH) have each been studied separately; however, their interrelationship remains unstudied. Given the use of interspinous implants as a minimally invasive treatment for lumbar stenosis and degenerative disc disease, defining these relationships is of growing clinical significance. This study investigates the correlation between ISD and both NFDs and DSH in a normative population and whether ISD varies with demographic factors. Methods: A retrospective chart review was performed on 852 patients who underwent CT imaging of the lumbar spine. ISD was measured from L1 to L5 as the shortest distance between the most caudal tip of the superior spinous process and the inferior spinous process. DSH was measured at the anterior, middle, and posterior margins. NFDs were assessed in axial and sagittal views, including axial width, craniocaudal height, and foraminal area. Statistical analysis assessed correlations between ISD, NFDs, DSH, and demographic variables. Results: No strong correlation was observed between ISD and either NFDs or DSH. Slightly greater correlation was present at L1–L3, weakening at L4–L5, where interspinous implants are most commonly placed. Demographic analysis revealed no consistent relationship between ISD and ethnicity, sex, or BMI. While it may be expected that larger ISD correlates with greater NFDs or DSH, our findings do not support this assumption. Conclusions: ISD does not strongly correlate with NFDs or DSH, and demographic factors do not significantly influence ISD in a healthy population.
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(This article belongs to the Special Issue Orthopaedic Radiology: Clinical Diagnosis and Application)
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Open AccessArticle
A Flexible Multi-Channel Deep Network Leveraging Texture and Spatial Features for Diagnosing New COVID-19 Variants in Lung CT Scans
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Shervan Fekri-Ershad and Khalegh Behrouz Dehkordi
Tomography 2025, 11(9), 99; https://doi.org/10.3390/tomography11090099 - 27 Aug 2025
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Background: The COVID-19 pandemic has claimed thousands of lives worldwide. While infection rates have declined in recent years, emerging variants remain a deadly threat. Accurate diagnosis is critical to curbing transmission and improving treatment outcomes. However, the similarity of COVID-19 symptoms to those
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Background: The COVID-19 pandemic has claimed thousands of lives worldwide. While infection rates have declined in recent years, emerging variants remain a deadly threat. Accurate diagnosis is critical to curbing transmission and improving treatment outcomes. However, the similarity of COVID-19 symptoms to those of the common cold and flu has spurred the development of automated diagnostic methods, particularly through lung computed-tomography (CT) scan analysis. Methodology: This paper proposes a novel deep learning-based approach for detecting diverse COVID-19 variants using advanced textural feature extraction. The framework employs a dual-channel convolutional neural network (CNN), where one channel processes texture-based features and the other analyzes spatial information. Unlike existing methods, our model dynamically learns textural patterns during training, eliminating reliance on predefined features. A modified local binary pattern (LBP) technique extracts texture data in matrix form, while the CNN’s adaptable internal architecture optimizes the balance between accuracy and computational efficiency. To enhance performance, hyperparameters are fine-tuned using the Adam optimizer and focal loss function. Results: The proposed method is evaluated on two benchmark datasets, COVID-349 and Italian COVID-Set, which include diverse COVID-19 variants. Conclusions: The results demonstrate its superior accuracy (94.63% and 95.47%, respectively), outperforming competing approaches in precision, recall, and overall diagnostic reliability.
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Open AccessArticle
Association Between Thoracic Kyphosis and Hiatal Enlargement: A CT-Based Study Interpreted in Light of GERD-Linked Morphological Markers
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Mustafa Mazıcan, Ismail Karluka and Davut Tuney
Tomography 2025, 11(9), 98; https://doi.org/10.3390/tomography11090098 - 26 Aug 2025
Abstract
Background: Thoracic kyphosis has been increasingly associated with altered intra-abdominal and diaphragmatic dynamics, potentially contributing to gastroesophageal reflux disease (GERD) and hiatal hernia (HH). While previous studies have shown a relationship between spinal deformities and GERD symptoms, these findings have been largely observational,
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Background: Thoracic kyphosis has been increasingly associated with altered intra-abdominal and diaphragmatic dynamics, potentially contributing to gastroesophageal reflux disease (GERD) and hiatal hernia (HH). While previous studies have shown a relationship between spinal deformities and GERD symptoms, these findings have been largely observational, with few morphometric analyses. No prior study has directly quantified the relationship between thoracic curvature and hiatal surface area (HSA) using standardized computed tomography (CT)-based methods. Furthermore, existing studies have typically focused on patients with visible hernias, limiting understanding of early, subclinical anatomical changes. This study addresses this gap by evaluating whether thoracic kyphosis is associated with measurable hiatal enlargement, even in the absence of overt HH. Methods: In this retrospective, single-center study, 100 adult patients (50 with thoracic kyphosis, defined as a Cobb angle of ≥50° and 50 age- and sex-matched controls) underwent multidetector CT (MDCT). Hiatal surface area (HSA) was measured on a standardized oblique axial plane aligned with the diaphragmatic crura. Correlation and multivariable regression analyses were performed to assess relationships between Cobb angle and HSA. Results: The kyphosis group showed significantly larger HSA than controls (5.14 ± 1.31 cm2 vs. 3.59 ± 0.74 cm2; p < 0.001). A moderate positive correlation was found between Cobb angle and HSA (r = 0.336, p = 0.017). Multivariable analysis identified the Cobb angle as an independent predictor of HSA (β = 0.028; p = 0.017), while age and sex were not significant predictors. No overt herniation was present in any subject. Conclusions: This is the first CT-based morphometric study to demonstrate that thoracic kyphosis is associated with hiatal enlargement, even in the absence of overt herniation. These findings support the hypothesis that postural spinal deformities may predispose individuals to GERD by structurally remodeling the diaphragmatic hiatus.
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(This article belongs to the Section Abdominal Imaging)
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Open AccessArticle
Validation of a Newly Developed Assessment Tool for Point-of-Care Ultrasound of the Thorax in Healthy Volunteers (VALPOCUS)
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Patrick Hoffmann, Tobias Hüppe, Nicolas Poncelet, Julius J. Weise, Ulrich Berwanger and David Conrad
Tomography 2025, 11(9), 97; https://doi.org/10.3390/tomography11090097 - 26 Aug 2025
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Objectives: Point-of-care ultrasound (POCUS) has become an integral part of emergency, intensive care, and perioperative medicine. However, the training and subsequent evaluation of POCUS users are still not standardized. The aim of the study was to develop and validate an assessment tool for
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Objectives: Point-of-care ultrasound (POCUS) has become an integral part of emergency, intensive care, and perioperative medicine. However, the training and subsequent evaluation of POCUS users are still not standardized. The aim of the study was to develop and validate an assessment tool for POCUS users. Methods: After reviewing the existing literature and a multi-stage expert survey (Delphi method), consensus on twelve items for the assessment tool was reached. To validate the assessment tool, a group of volunteer doctors and medical students performed a POCUS examination using simple linear probe and more complex sector probe techniques. The examination was evaluated by two independent assessors using the created assessment tool. Then, four experts evaluated anonymized recordings of the examinations. We tested the reliability and validity, including internal consistency. Results: A total of 70 examinations were included. Of these, 19 examinations were carried out by physicians and 51 by medical students. A high inter-rater reliability (Cohen’s kappa 0.78 (linear weighted; SEM 0.37; p < 0.001) and Krippendorff’s alpha 0.895) was shown for the evaluation tool. To improve discriminative power and strengthen reliability, the assessment tool was modified using Cronbach’s alpha. Modification resulted in the removal of three items (patient positioning, ultrasound mode selection, and probe selection) from the tool. The mean values of instrument and expert ratings were now 2.62% apart (46.90% instrument vs. 44.29% expert). Pearson’s correlation coefficient between tool and expert ratings showed moderate to high validity (r = 0.69; p < 0.001). Conclusions: The new assessment tool is highly reliable and a valid tool for assessing POCUS skills. It holds strong potential for integration into medical education and training to objectify ultrasound skills. Further studies are required to investigate discriminatory power and transferability to other POCUS algorithms.
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Open AccessReview
Leveraging Multimodal Foundation Models in Biliary Tract Cancer Research
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Yashbir Singh, Jesper B. Andersen, Quincy A. Hathaway, Diana V. Vera-Garcia, Varekan Keishing, Sudhakar K. Venkatesh, Sara Salehi, Davide Povero, Michael B. Wallace, Gregory J. Gores, Yujia Wei, Natally Horvat, Bradley J. Erickson and Emilio Quaia
Tomography 2025, 11(9), 96; https://doi.org/10.3390/tomography11090096 - 25 Aug 2025
Abstract
This review explores how multimodal foundation models (MFMs) are transforming biliary tract cancer (BTC) research. BTCs are aggressive malignancies with poor prognosis, presenting unique challenges due to difficult diagnostic methods, molecular complexity, and rarity. Importantly, intrahepatic cholangiocarcinoma (iCCA), perihilar cholangiocarcinoma (pCCA), and distal
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This review explores how multimodal foundation models (MFMs) are transforming biliary tract cancer (BTC) research. BTCs are aggressive malignancies with poor prognosis, presenting unique challenges due to difficult diagnostic methods, molecular complexity, and rarity. Importantly, intrahepatic cholangiocarcinoma (iCCA), perihilar cholangiocarcinoma (pCCA), and distal bile duct cholangiocarcinoma (dCCA) represent fundamentally distinct clinical entities, with iCCA presenting as mass-forming lesions amenable to biopsy and targeted therapies, while pCCA manifests as infiltrative bile duct lesions with challenging diagnosis and primarily palliative management approaches. MFMs offer potential to advance research by integrating radiological images, histopathology, multi-omics profiles, and clinical data into unified computational frameworks, with applications tailored to these distinct BTC subtypes. Key applications include enhanced biomarker discovery that identifies previously unrecognizable cross-modal patterns, potential for improving currently limited diagnostic accuracy—though validation in BTC-specific cohorts remains essential—accelerated drug repurposing, and advanced patient stratification for personalized treatment. Despite promising results, challenges such as data scarcity, high computational demands, and clinical workflow integration remain to be addressed. Future research should focus on standardized data protocols, architectural innovations, and prospective validation studies. The integration of artificial intelligence (AI)-based methodologies offers new solutions for these historically challenging malignancies. However, current evidence for BTC-specific applications remains largely theoretical, with most studies limited to proof-of-concept designs or related cancer types. Comprehensive clinical validation studies and prospective trials demonstrating patient benefit are essential prerequisites for clinical implementation. The timeline for evidence-based clinical adoption likely extends 7–10 years, contingent on successful completion of validation studies addressing current evidence gaps.
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(This article belongs to the Section Cancer Imaging)
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Open AccessArticle
Electron Density and Effective Atomic Number of Normal-Appearing Adult Brain Tissues: Age-Related Changes and Correlation with Myelin Content
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Tomohito Hasegawa, Masanori Nakajo, Misaki Gohara, Kiyohisa Kamimura, Tsubasa Nakano, Junki Kamizono, Koji Takumi, Fumitaka Ejima, Gregor Pahn, Eran Langzam, Ryota Nakanosono, Ryoji Yamagishi, Fumiko Kanzaki and Takashi Yoshiura
Tomography 2025, 11(9), 95; https://doi.org/10.3390/tomography11090095 - 25 Aug 2025
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Objectives: Few studies have reported in vivo measurements of electron density (ED) and effective atomic number (Zeff) in normal brain tissue. To address this gap, dual-energy computed tomography (DECT)-derived ED and Zeff maps were used to characterize normal-appearing adult brain
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Objectives: Few studies have reported in vivo measurements of electron density (ED) and effective atomic number (Zeff) in normal brain tissue. To address this gap, dual-energy computed tomography (DECT)-derived ED and Zeff maps were used to characterize normal-appearing adult brain tissues, evaluate age-related changes, and investigate correlations with myelin partial volume (Vmy) from synthetic magnetic resonance imaging (MRI). Materials and Methods: Thirty patients were retrospectively analyzed. The conventional computed tomography (CT) value (CTconv), ED, Zeff, and Vmy were measured in the normal-appearing gray matter (GM) and white matter (WM) regions of interest. Vmy and DECT-derived parameters were compared between WM and GM. Correlations between Vmy and DECT parameters and between age and DECT parameters were analyzed. Results: Vmy was significantly greater in WM than in GM, whereas CTconv, ED, and Zeff were significantly lower in WM than in GM (all p < 0.001). Zeff exhibited a stronger negative correlation with Vmy (ρ = −0.756) than CTconv (ρ = −0.705) or ED (ρ = −0.491). ED exhibited weak to moderate negative correlations with age in nine of the 14 regions. In contrast, Zeff exhibited weak to moderate positive correlations with age in nine of the 14 regions. CTconv exhibited negligible to insignificant correlations with age: Conclusions: This study revealed distinct GM–WM differences in ED and Zeff along with opposing age-related changes in these quantities. Therefore, myelin may have substantially contributed to the lower Zeff observed in WM, which underlies the GM–WM contrast observed on non-contrast-enhanced CT.
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Open AccessArticle
Performance of a Deep Learning Reconstruction Method on Clinical Chest–Abdomen–Pelvis Scans from a Dual-Layer Detector CT System
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Christopher Schuppert, Stefanie Rahn, Nikolas D. Schnellbächer, Frank Bergner, Michael Grass, Hans-Ulrich Kauczor, Stephan Skornitzke, Tim F. Weber and Thuy D. Do
Tomography 2025, 11(9), 94; https://doi.org/10.3390/tomography11090094 - 25 Aug 2025
Abstract
Objective: The objective of this study was to compare the performance and robustness of a deep learning reconstruction method against established alternatives for soft tissue CT image reconstruction. Materials and Methods: Images were generated from portal venous phase chest–abdomen–pelvis CT scans
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Objective: The objective of this study was to compare the performance and robustness of a deep learning reconstruction method against established alternatives for soft tissue CT image reconstruction. Materials and Methods: Images were generated from portal venous phase chest–abdomen–pelvis CT scans (n = 99) acquired on a dual-layer spectral detector CT using filtered back projection, iterative model reconstruction (IMR), and deep learning reconstruction (DLR) with three parameter settings, namely ‘standard’, ‘sharper’, and ‘smoother’. Experienced raters performed a quantitative assessment by considering attenuation stability and image noise levels in ten representative structures across all reconstruction methods, as well as a qualitative assessment using a four-point Likert scale (1 = poor, 2 = fair, 3 = good, 4 = excellent) for their overall perception of ‘smoother’ DLR and IMR images. One scan was excluded due to cachexia, which limited the quantitative measurements. Results: The inter-rater reliability for quantitative measurements ranged from moderate to excellent (r = 0.63–0.96). Attenuation values did not differ significantly between reconstruction methods except for DLR against IMR in the psoas muscle (mean + 3.0 HU, p < 0.001). Image noise levels differed significantly between reconstruction methods for all structures (all p < 0.001) and were lower than FBP with any DLR parameter setting. Image noise levels with ‘smoother’ DLR were predominantly lower than or equal to IMR, while they were higher with ‘standard’ DLR and ‘sharper’ DLR. The ‘smoother’ DLR images received a higher mean rating for overall image quality than the IMR images (3.7 vs. 2.3, p < 0.001). Conclusions: ‘Smoother’ DLR images were perceived by experienced readers as having improved quality compared to FBP and IMR while also exhibiting objectively lower or equivalent noise levels.
Full article
(This article belongs to the Special Issue Cutting-Edge Applications: Artificial Intelligence and Deep Learning Revolutionizing CT and MRI)
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Open AccessArticle
Contrast-Enhanced Mammography in Breast Lesion Assessment: Accuracy and Surgical Impact
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Graziella Di Grezia, Sara Mercogliano, Luca Marinelli, Antonio Nazzaro, Alessandro Galiano, Elisa Cisternino, Gianluca Gatta, Vincenzo Cuccurullo and Mariano Scaglione
Tomography 2025, 11(8), 93; https://doi.org/10.3390/tomography11080093 - 20 Aug 2025
Abstract
Background: Accurate preoperative tumor sizing is critical for optimal surgical planning in breast cancer. Contrast-enhanced mammography (CEM) has emerged as a promising modality, yet its accuracy relative to conventional imaging and pathology requires further validation. Objective: To prospectively evaluate the dimensional accuracy and
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Background: Accurate preoperative tumor sizing is critical for optimal surgical planning in breast cancer. Contrast-enhanced mammography (CEM) has emerged as a promising modality, yet its accuracy relative to conventional imaging and pathology requires further validation. Objective: To prospectively evaluate the dimensional accuracy and reproducibility of CEM compared to mammography and ultrasound, using surgical pathology as the reference standard. Methods: A total of 205 patients with 267 breast lesions underwent preoperative CEM, mammography, and ultrasound. Tumor sizes were measured independently by two radiologists. Accuracy was assessed via mean absolute error (MAE), Pearson and Spearman correlations, and inter-reader agreement evaluated by intraclass correlation coefficient (ICC) and Gwet’s AC1. Sensitivity analyses included bootstrap confidence intervals and log-transformed data. The surgical impact of additional lesions detected by CEM was also analyzed. Results: CEM showed superior accuracy with a mean absolute error of 0.46 mm (95% CI: 0.24–0.68) compared to mammography (4.06 mm) and ultrasound (3.52 mm) (p < 0.00001). Pearson’s correlation between CEM and pathology was exceptionally high (r = 0.995; 95% CI: 0.994–0.996), with similar robustness after log transformation. Inter-reader agreement for CEM was excellent (ICC 0.93; Gwet’s AC1 ~0.96, 95% CI: 0.93–0.98). CEM detected additional lesions in 13.1% of patients, leading to altered surgical management in 6.4%. Background parenchymal enhancement was independently associated with measurement error. Conclusions: CEM provides highly accurate and reproducible tumor size estimation superior to conventional imaging modalities, with potential clinical impact through detection of additional lesions. Its ability to detect additional lesions not seen on mammography or ultrasound has direct implications for surgical decision making, with the potential to reduce reoperations and improve oncologic and cosmetic outcomes. However, high correlation values and selective patient cohorts warrant cautious interpretation. Further multicenter studies are needed to confirm these findings and define CEM’s role in clinical practice.
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(This article belongs to the Section Cancer Imaging)
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Open AccessCommunication
Differences in PI-RADS Classification of Prostate Cancer Based on mpMRI Scans Taken 6 Weeks Apart
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Justine Schoch, Viola Düring, Michael Wiedmann, Daniel Overhoff, Daniel Dillinger, Stephan Waldeck, Hans-Ulrich Schmelz and Tim Nestler
Tomography 2025, 11(8), 92; https://doi.org/10.3390/tomography11080092 - 18 Aug 2025
Abstract
Objectives: This study aimed to investigate the consistency of lesion identification by Prostate Imaging Reporting and Data System (PI-RADS) and the related clinical and histological characteristics in a high-volume tertiary care center. Materials and methods: The analysis used real-world data from 111 patients
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Objectives: This study aimed to investigate the consistency of lesion identification by Prostate Imaging Reporting and Data System (PI-RADS) and the related clinical and histological characteristics in a high-volume tertiary care center. Materials and methods: The analysis used real-world data from 111 patients between 2018 and 2022. Each patient underwent two multiparametric magnetic resonance imaging (MRI) scans of the prostate at different institutions with a median interval of 42 days between the scans, followed by an MRI-fused biopsy conducted 7 days after the second MRI. Results: The PI-RADS classifications assigned to the index lesions in the in-house prostate MRI were as follows: PI-RADS V, 33.3% (n = 37); PI-RADS IV, 49.5% (n = 55); PI-RADS III, 12.6% (n = 14); and PI-RADS II, 4.5% (n = 5). Cancer detection rates for randomized and/or targeted biopsies were 91.9% (n = 34) for PI-RADS V, 65.5% (n = 36) for PI-RADS IV, 21.4% (n = 3) for PI-RADS III, and 20% (n = 1) for PI-RADS II. Overall, malignant histology was observed in 64.9% (n = 72) of the targeted lesions and 57.7% (n = 64) of the randomized biopsies. In the first performed, external MRI, 18% (n = 20) and 10.8% (n = 12) of the patients were classified in the higher and lower PI-RADS categories, respectively. The biopsy plan was adjusted for 57 patients (51.4%); nevertheless, any cancer could have possibly been identified regardless of the adjustments. Conclusion: The 6-week interval between the MRI scans did not affect the quality of the biopsy results significantly.
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(This article belongs to the Special Issue New Trends in Diagnostic and Interventional Radiology)
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Open AccessArticle
Autoencoder-Assisted Stacked Ensemble Learning for Lymphoma Subtype Classification: A Hybrid Deep Learning and Machine Learning Approach
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Roseline Oluwaseun Ogundokun, Pius Adewale Owolawi, Chunling Tu and Etienne van Wyk
Tomography 2025, 11(8), 91; https://doi.org/10.3390/tomography11080091 - 18 Aug 2025
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Background: Accurate subtype identification of lymphoma cancer is crucial for effective diagnosis and treatment planning. Although standard deep learning algorithms have demonstrated robustness, they are still prone to overfitting and limited generalization, necessitating more reliable and robust methods. Objectives: This study presents an
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Background: Accurate subtype identification of lymphoma cancer is crucial for effective diagnosis and treatment planning. Although standard deep learning algorithms have demonstrated robustness, they are still prone to overfitting and limited generalization, necessitating more reliable and robust methods. Objectives: This study presents an autoencoder-augmented stacked ensemble learning (SEL) framework integrating deep feature extraction (DFE) and ensembles of machine learning classifiers to improve lymphoma subtype identification. Methods: Convolutional autoencoder (CAE) was utilized to obtain high-level feature representations of histopathological images, followed by dimensionality reduction via Principal Component Analysis (PCA). Various models were utilized for classifying extracted features, i.e., Random Forest (RF), Support Vector Machine (SVM), Multi-Layer Perceptron (MLP), AdaBoost, and Extra Trees classifiers. A Gradient Boosting Machine (GBM) meta-classifier was utilized in an SEL approach to further fine-tune final predictions. Results: All the models were tested using accuracy, area under the curve (AUC), and Average Precision (AP) metrics. The stacked ensemble classifier performed better than all the individual models with a 99.04% accuracy, 0.9998 AUC, and 0.9996 AP, far exceeding what regular deep learning (DL) methods would achieve. Of standalone classifiers, MLP (97.71% accuracy, 0.9986 AUC, 0.9973 AP) and Random Forest (96.71% accuracy, 0.9977 AUC, 0.9953 AP) provided the best prediction performance, while AdaBoost was the poorest performer (68.25% accuracy, 0.8194 AUC, 0.6424 AP). PCA and t-SNE plots confirmed that DFE effectively enhances class discrimination. Conclusion: This study demonstrates a highly accurate and reliable approach to lymphoma classification by using autoencoder-assisted ensemble learning, reducing the misclassification rate and significantly enhancing the accuracy of diagnosis. AI-based models are designed to assist pathologists by providing interpretable outputs such as class probabilities and visualizations (e.g., Grad-CAM), enabling them to understand and validate predictions in the diagnostic workflow. Future studies should enhance computational efficacy and conduct multi-centre validation studies to confirm the model’s generalizability on extensive collections of histopathological datasets.
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Open AccessArticle
Machine Learning and Feature Selection in Pediatric Appendicitis
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John Kendall, Gabriel Gaspar, Derek Berger and Jacob Levman
Tomography 2025, 11(8), 90; https://doi.org/10.3390/tomography11080090 - 13 Aug 2025
Abstract
Background/Objectives: Accurate prediction of pediatric appendicitis diagnosis, management, and severity is critical for clinical decision-making. We aimed to evaluate the predictive performance of a wide range of machine learning models, combined with various feature selection techniques, on a pediatric appendicitis dataset. A particular
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Background/Objectives: Accurate prediction of pediatric appendicitis diagnosis, management, and severity is critical for clinical decision-making. We aimed to evaluate the predictive performance of a wide range of machine learning models, combined with various feature selection techniques, on a pediatric appendicitis dataset. A particular focus was placed on the role of ultrasound (US) image-descriptive features in model performance and explainability. Methods: We conducted a retrospective cohort study on a dataset of 781 pediatric patients aged 0–18 presenting to Children’s Hospital St. Hedwig in Regensburg, Germany, between January 2016 and February 2023. We developed and validated predictive models; machine learning algorithms included the random forest, logistic regression, stochastic gradient descent, and the light gradient boosting machine (LGBM). These were paired exhaustively with feature selection methods spanning filter-based (association and prediction), embedded (LGBM and linear), and a novel redundancy-aware step-up wrapper approach. We employed a machine learning benchmarking study design where AI models were trained to predict diagnosis, management, and severity outcomes, both with and without US image-descriptive features, and evaluated on held-out testing samples. Model performance was assessed using overall accuracy and area under the receiver operating characteristic curve (AUROC). A deep learner optimized for tabular data, GANDALF, was also evaluated in these applications. Results: US features significantly improved diagnostic accuracy, supporting their use in reducing model bias. However, they were not essential for maximizing accuracy in predicting management or severity. In summary, our best-performing models were, for diagnosis, the random forest with embedded LGBM feature selection (98.1% accuracy, AUROC: 0.993), for management, the random forest without feature selection (93.9% accuracy, AUROC: 0.980), and for severity, the LGBM with filter-based association feature selection (90.1% accuracy, AUROC: 0.931). Conclusions: Our results demonstrate that high-performing, interpretable machine learning models can predict key clinical outcomes in pediatric appendicitis. US image features improve diagnostic accuracy but are not critical for predicting management or severity.
Full article
(This article belongs to the Special Issue Celebrate the 10th Anniversary of Tomography)
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Open AccessArticle
Feasibility of Sodium and Amide Proton Transfer-Weighted Magnetic Resonance Imaging Methods in Mild Steatotic Liver Disease
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Diana M. Lindquist, Mary Kate Manhard, Joel Levoy and Jonathan R. Dillman
Tomography 2025, 11(8), 89; https://doi.org/10.3390/tomography11080089 - 6 Aug 2025
Abstract
Background/Objectives: Fat and inflammation confound current magnetic resonance imaging (MRI) methods for assessing fibrosis in liver disease. Sodium or amide proton transfer-weighted MRI methods may be more specific for assessing liver fibrosis. The purpose of this study was to determine the feasibility
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Background/Objectives: Fat and inflammation confound current magnetic resonance imaging (MRI) methods for assessing fibrosis in liver disease. Sodium or amide proton transfer-weighted MRI methods may be more specific for assessing liver fibrosis. The purpose of this study was to determine the feasibility of sodium and amide proton transfer-weighted MRI in individuals with liver disease and to determine if either method correlated with clinical markers of fibrosis. Methods: T1 and T2 relaxation maps, proton density fat fraction maps, liver shear stiffness maps, amide proton transfer-weighted (APTw) images, and sodium images were acquired at 3T. Image data were extracted from regions of interest placed in the liver. ANOVA tests were run with disease status, age, and body mass index as independent factors; significance was set to p < 0.05. Post-hoc t-tests were run when the ANOVA showed significance. Results: A total of 36 participants were enrolled, 34 of whom were included in the final APTw analysis and 24 in the sodium analysis. Estimated liver tissue sodium concentration differentiated participants with liver disease from those without, whereas amide proton transfer-weighted MRI did not. Estimated liver tissue sodium concentration negatively correlated with the Fibrosis-4 score, but amide proton transfer-weighted MRI did not correlate with any clinical marker of disease. Conclusions: Amide proton-weighted imaging was not different between groups. Estimated liver tissue sodium concentrations did differ between groups but did not provide additional information over conventional methods.
Full article
(This article belongs to the Section Abdominal Imaging)
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Open AccessArticle
Compressed Sensing Reconstruction with Zero-Shot Self-Supervised Learning for High-Resolution MRI of Human Embryos
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Kazuma Iwazaki, Naoto Fujita, Shigehito Yamada and Yasuhiko Terada
Tomography 2025, 11(8), 88; https://doi.org/10.3390/tomography11080088 - 2 Aug 2025
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Objectives: This study investigates whether scan time in the high-resolution magnetic resonance imaging (MRI) of human embryos can be reduced without compromising spatial resolution by applying zero-shot self-supervised learning (ZS-SSL), a deep-learning-based reconstruction method. Methods: Simulations using a numerical phantom were
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Objectives: This study investigates whether scan time in the high-resolution magnetic resonance imaging (MRI) of human embryos can be reduced without compromising spatial resolution by applying zero-shot self-supervised learning (ZS-SSL), a deep-learning-based reconstruction method. Methods: Simulations using a numerical phantom were conducted to evaluate spatial resolution across various acceleration factors (AF = 2, 4, 6, and 8) and signal-to-noise ratio (SNR) levels. Resolution was quantified using a blur-based estimation method based on the Sparrow criterion. ZS-SSL was compared to conventional compressed sensing (CS). Experimental imaging of a human embryo at Carnegie stage 21 was performed at a spatial resolution of (30 μm)3 using both retrospective and prospective undersampling at AF = 4 and 8. Results: ZS-SSL preserved spatial resolution more effectively than CS at low SNRs. At AF = 4, image quality was comparable to that of fully sampled data, while noticeable degradation occurred at AF = 8. Experimental validation confirmed these findings, with clear visualization of anatomical structures—such as the accessory nerve—at AF = 4; there was reduced structural clarity at AF = 8. Conclusions: ZS-SSL enables significant scan time reduction in high-resolution MRI of human embryos while maintaining spatial resolution at AF = 4, assuming an SNR above approximately 15. This trade-off between acceleration and image quality is particularly beneficial in studies with limited imaging time or specimen availability. The method facilitates the efficient acquisition of ultra-high-resolution data and supports future efforts to construct detailed developmental atlases.
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Open AccessArticle
Assessment of Influencing Factors and Robustness of Computable Image Texture Features in Digital Images
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Diego Andrade, Howard C. Gifford and Mini Das
Tomography 2025, 11(8), 87; https://doi.org/10.3390/tomography11080087 - 31 Jul 2025
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Background/Objectives: There is significant interest in using texture features to extract hidden image-based information. In medical imaging applications using radiomics, AI, or personalized medicine, the quest is to extract patient or disease specific information while being insensitive to other system or processing variables.
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Background/Objectives: There is significant interest in using texture features to extract hidden image-based information. In medical imaging applications using radiomics, AI, or personalized medicine, the quest is to extract patient or disease specific information while being insensitive to other system or processing variables. While we use digital breast tomosynthesis (DBT) to show these effects, our results would be generally applicable to a wider range of other imaging modalities and applications. Methods: We examine factors in texture estimation methods, such as quantization, pixel distance offset, and region of interest (ROI) size, that influence the magnitudes of these readily computable and widely used image texture features (specifically Haralick’s gray level co-occurrence matrix (GLCM) textural features). Results: Our results indicate that quantization is the most influential of these parameters, as it controls the size of the GLCM and range of values. We propose a new multi-resolution normalization (by either fixing ROI size or pixel offset) that can significantly reduce quantization magnitude disparities. We show reduction in mean differences in feature values by orders of magnitude; for example, reducing it to 7.34% between quantizations of 8–128, while preserving trends. Conclusions: When combining images from multiple vendors in a common analysis, large variations in texture magnitudes can arise due to differences in post-processing methods like filters. We show that significant changes in GLCM magnitude variations may arise simply due to the filter type or strength. These trends can also vary based on estimation variables (like offset distance or ROI) that can further complicate analysis and robustness. We show pathways to reduce sensitivity to such variations due to estimation methods while increasing the desired sensitivity to patient-specific information such as breast density. Finally, we show that our results obtained from simulated DBT images are consistent with what we see when applied to clinical DBT images.
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Open AccessArticle
Reliability of Automated Amyloid PET Quantification: Real-World Validation of Commercial Tools Against Centiloid Project Method
by
Yeon-koo Kang, Jae Won Min, Soo Jin Kwon and Seunggyun Ha
Tomography 2025, 11(8), 86; https://doi.org/10.3390/tomography11080086 - 30 Jul 2025
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Background: Despite the growing demand for amyloid PET quantification, practical challenges remain. As automated software platforms are increasingly adopted to address these limitations, we evaluated the reliability of commercial tools for Centiloid quantification against the original Centiloid Project method. Methods: This retrospective study
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Background: Despite the growing demand for amyloid PET quantification, practical challenges remain. As automated software platforms are increasingly adopted to address these limitations, we evaluated the reliability of commercial tools for Centiloid quantification against the original Centiloid Project method. Methods: This retrospective study included 332 amyloid PET scans (165 [18F]Florbetaben; 167 [18F]Flutemetamol) performed for suspected mild cognitive impairments or dementia, paired with T1-weighted MRI within one year. Centiloid values were calculated using three automated software platforms, BTXBrain, MIMneuro, and SCALE PET, and compared with the original Centiloid method. The agreement was assessed using Pearson’s correlation coefficient, the intraclass correlation coefficient (ICC), a Passing–Bablok regression, and Bland–Altman plots. The concordance with the visual interpretation was evaluated using receiver operating characteristic (ROC) curves. Results: BTXBrain (R = 0.993; ICC = 0.986) and SCALE PET (R = 0.992; ICC = 0.991) demonstrated an excellent correlation with the reference, while MIMneuro showed a slightly lower agreement (R = 0.974; ICC = 0.966). BTXBrain exhibited a proportional underestimation (slope = 0.872 [0.860–0.885]), MIMneuro showed a significant overestimation (slope = 1.053 [1.026–1.081]), and SCALE PET demonstrated a minimal bias (slope = 1.014 [0.999–1.029]). The bias pattern was particularly noted for FMM. All platforms maintained their trends for correlations and biases when focusing on subthreshold-to-low-positive ranges (0–50 Centiloid units). However, all platforms showed an excellent agreement with the visual interpretation (areas under ROC curves > 0.996 for all). Conclusions: Three automated platforms demonstrated an acceptable reliability for Centiloid quantification, although software-specific biases were observed. These differences did not impair their feasibility in aiding the image interpretation, as supported by the concordance with visual readings. Nevertheless, users should recognize the platform-specific characteristics when applying diagnostic thresholds or interpreting longitudinal changes.
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Open AccessReview
Computed Tomography and Coronary Plaque Analysis
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Hashim Alhammouri, Ramzi Ibrahim, Rahmeh Alasmar, Mahmoud Abdelnabi, Eiad Habib, Mohamed Allam, Hoang Nhat Pham, Hossam Elbenawi, Juan Farina, Balaji Tamarappoo, Clinton Jokerst, Kwan Lee, Chadi Ayoub and Reza Arsanjani
Tomography 2025, 11(8), 85; https://doi.org/10.3390/tomography11080085 - 30 Jul 2025
Abstract
Advances in plaque imaging have transformed cardiovascular diagnostics through detailed characterization of atherosclerotic plaques beyond traditional stenosis assessment. This review outlines the clinical applications of varying modalities, including dual-layer spectral CT, photon-counting CT, dual-energy CT, and CT-derived fractional flow reserve (CT-FFR). These technologies
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Advances in plaque imaging have transformed cardiovascular diagnostics through detailed characterization of atherosclerotic plaques beyond traditional stenosis assessment. This review outlines the clinical applications of varying modalities, including dual-layer spectral CT, photon-counting CT, dual-energy CT, and CT-derived fractional flow reserve (CT-FFR). These technologies offer improved spatial resolution, tissue differentiation, and functional assessment of coronary lesions. Additionally, artificial intelligence has emerged as a powerful tool to automate plaque detection, quantify burden, and refine risk prediction. Collectively, these innovations provide a more comprehensive approach to coronary artery disease evaluation and support personalized management strategies.
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(This article belongs to the Special Issue New Trends in Diagnostic and Interventional Radiology)
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Open AccessArticle
Imaging on the Edge: Mapping Object Corners and Edges with Stereo X-Ray Tomography
by
Zhenduo Shang and Thomas Blumensath
Tomography 2025, 11(8), 84; https://doi.org/10.3390/tomography11080084 - 29 Jul 2025
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Background/Objectives: X-ray computed tomography (XCT) is a powerful tool for volumetric imaging, where three-dimensional (3D) images are generated from a large number of individual X-ray projection images. However, collecting the required number of low-noise projection images is time-consuming, limiting its applicability to scenarios
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Background/Objectives: X-ray computed tomography (XCT) is a powerful tool for volumetric imaging, where three-dimensional (3D) images are generated from a large number of individual X-ray projection images. However, collecting the required number of low-noise projection images is time-consuming, limiting its applicability to scenarios requiring high temporal resolution, such as the study of dynamic processes. Inspired by stereo vision, we previously developed stereo X-ray imaging methods that operate with only two X-ray projections, enabling the 3D reconstruction of point and line fiducial markers at significantly faster temporal resolutions. Methods: Building on our prior work, this paper demonstrates the use of stereo X-ray techniques for 3D reconstruction of sharp object corners, eliminating the need for internal fiducial markers. This is particularly relevant for deformation measurement of manufactured components under load. Additionally, we explore model training using synthetic data when annotated real data is unavailable. Results: We show that the proposed method can reliably reconstruct sharp corners in 3D using only two X-ray projections. The results confirm the method’s applicability to real-world stereo X-ray images without relying on annotated real training datasets. Conclusions: Our approach enables stereo X-ray 3D reconstruction using synthetic training data that mimics key characteristics of real data, thereby expanding the method’s applicability in scenarios with limited training resources.
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Open AccessReview
Emerging PET Imaging Agents and Targeted Radioligand Therapy: A Review of Clinical Applications and Trials
by
Maierdan Palihati, Jeeban Paul Das, Randy Yeh and Kathleen Capaccione
Tomography 2025, 11(8), 83; https://doi.org/10.3390/tomography11080083 - 28 Jul 2025
Abstract
Targeted radioligand therapy (RLT) is an emerging field in anticancer therapeutics with great potential across tumor types and stages of disease. While much progress has focused on agents targeting somatostatin receptors and prostate-specific membrane antigen (PSMA), the same advanced radioconjugation methods and molecular
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Targeted radioligand therapy (RLT) is an emerging field in anticancer therapeutics with great potential across tumor types and stages of disease. While much progress has focused on agents targeting somatostatin receptors and prostate-specific membrane antigen (PSMA), the same advanced radioconjugation methods and molecular targeting have spurred the development of numerous theranostic combinations for other targets. A number of the most promising agents have progressed to clinical trials and are poised to change the landscape of positron emission tomography (PET) imaging. Here, we present recent data on some of the most important emerging molecular targeted agents with their exemplar clinical images, including agents targeting fibroblast activation protein (FAP), hypoxia markers, gastrin-releasing peptide receptors (GRPrs), and integrins. These radiopharmaceuticals share the promising characteristic of being able to image multiple types of cancer. Early clinical trials have already demonstrated superiority to 18F-fluorodeoxyglucose (18F-FDG) for some, suggesting the potential to supplant this longstanding PET radiotracer. Here, we provide a primer for practicing radiologists, particularly nuclear medicine clinicians, to understand novel PET imaging agents and their clinical applications, as well as the availability of companion targeted radiotherapeutics, the status of their regulatory approval, the potential challenges associated with their use, and the future opportunities and perspectives.
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(This article belongs to the Section Cancer Imaging)
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Open AccessArticle
Fat Fraction MRI for Longitudinal Assessment of Bone Marrow Heterogeneity in a Mouse Model of Myelofibrosis
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Lauren Brenner, Tanner H. Robison, Timothy D. Johnson, Kristen Pettit, Moshe Talpaz, Thomas L. Chenevert, Brian D. Ross and Gary D. Luker
Tomography 2025, 11(8), 82; https://doi.org/10.3390/tomography11080082 - 28 Jul 2025
Abstract
Background/Objectives: Myelofibrosis (MF) is a myeloproliferative neoplasm characterized by the replacement of healthy bone marrow (BM) with malignant and fibrotic tissue. In a healthy state, bone marrow is composed of approximately 60–70% fat cells, which are replaced as disease progresses. Proton density fat
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Background/Objectives: Myelofibrosis (MF) is a myeloproliferative neoplasm characterized by the replacement of healthy bone marrow (BM) with malignant and fibrotic tissue. In a healthy state, bone marrow is composed of approximately 60–70% fat cells, which are replaced as disease progresses. Proton density fat fraction (PDFF), a non-invasive and quantitative MRI metric, enables analysis of BM architecture by measuring the percentage of fat versus cells in the environment. Our objective is to investigate variance in quantitative PDFF-MRI values over time as a marker of disease progression and response to treatment. Methods: We analyzed existing data from three cohorts of mice: two groups with MF that failed to respond to therapy with approved drugs for MF (ruxolitinib, fedratinib), investigational compounds (navitoclax, balixafortide), or vehicle and monitored over time by MRI; the third group consisted of healthy controls imaged at a single time point. Using in-house MATLAB programs, we performed a voxel-wise analysis of PDFF values in lower extremity bone marrow, specifically comparing the variance of each voxel within and among mice. Results: Our findings revealed a significant difference in PDFF values between healthy and diseased BM. With progressive disease non-responsive to therapy, the expansion of hematopoietic cells in BM nearly completely replaced normal fat, as determined by a markedly reduced PDFF and notable reduction in the variance in PDFF values in bone marrow over time. Conclusions: This study validated our hypothesis that the variance in PDFF in BM decreases with disease progression, indicating pathologic expansion of hematopoietic cells. We can conclude that disease progression can be tracked by a decrease in PDFF values. Analyzing variance in PDFF may improve the assessment of disease progression in pre-clinical models and ultimately patients with MF.
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(This article belongs to the Section Cancer Imaging)
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Open AccessSystematic Review
TACE Versus TARE in the Treatment of Liver-Metastatic Breast Cancer: A Systematic Review
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Charalampos Lalenis, Alessandro Posa, Valentina Lancellotta, Marcello Lippi, Fabio Marazzi, Pierluigi Barbieri, Patrizia Cornacchione, Matthias Joachim Fischer, Luca Tagliaferri and Roberto Iezzi
Tomography 2025, 11(7), 81; https://doi.org/10.3390/tomography11070081 - 12 Jul 2025
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Background/Objectives: Liver metastases are common among patients with breast cancer and have a poor prognosis if left untreated. The aim of this systematic review is to evaluate and compare chemoembolization (TACE) versus radioembolization (TARE) treatments in patients with breast cancer liver-dominant metastases
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Background/Objectives: Liver metastases are common among patients with breast cancer and have a poor prognosis if left untreated. The aim of this systematic review is to evaluate and compare chemoembolization (TACE) versus radioembolization (TARE) treatments in patients with breast cancer liver-dominant metastases in terms of overall survival (OS), local tumor control (LC), and toxicity. Methods: The S.P.I.D.E.R framework was used to address the clinical question. A systematic literature search using PubMed and Scopus was performed to identify full articles evaluating the efficacy of TACE and TARE in patients with liver metastases from breast cancer. Results: The literature search resulted in 10 articles for TACE, 13 articles for TARE and 1 for combined TACE/TARE, totaling 462 patients for the TACE group and 627 for the TARE group. The median LC was 68.7% for TACE and 78.9% for TARE. The median OS was 15.3 months for TACE and 11.9 for TARE. Progression at three months was 32.5% for TACE and 20.6% for TARE. Conclusions: The included studies were heterogeneous, varying widely in design, patient selection, and therapeutic protocols. Nonetheless, this systematic review suggests that locoregional therapies are effective in the treatment of liver metastases in patients with breast cancer and may improve tumor burden, alleviate symptoms and extend overall survival. The median LC of the liver metastases at three months was higher in the TARE group compared to TACE. However, the TARE group showed lower OS rates after treatment.
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Meet Us at the 28th International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI 2025), 23–27 September 2025, Daejeon, Republic of Korea
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