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Combined Quantum Mechanical and Molecular Mechanical Methods and Simulations II

This special issue belongs to the section “Computational and Theoretical Chemistry“.

Special Issue Information

Dear Colleagues,

This Special Issue of Molecules, “Combined Quantum Mechanical and Molecular Mechanical Methods and Simulations II” presents both recent developments and applications in the exciting field of multiscale computer simulations and modelling of biological systems. The purpose of this Special Issue is to showcase state-of-the-art examples of molecular dynamics simulations from quantum to classical approaches (both at atomistic and coarse-grained level), spanning a wide range of length and time scales. Both hybrid methods using two levels of resolution (such as QM/MM) and bottom-up/top-down approaches (integrating data from simulations at different levels) will be considered. Discussion about the existing challenges and problems in the field is also covered, with special focus on sampling and force field limitations to describe complexity in biological systems, as well as the difficulties for the development and deployment of computational tools to assist the design and interpretation of experimental studies.

Prof. Carmen Domene
Prof. Dr. Mercedes Alfonso-Prieto
Guest Editors

Manuscript Submission Information

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Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-blind peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Molecules is an international peer-reviewed open access semimonthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2700 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • Molecular dynamics simulations
  • Free energy methods
  • Enhanced sampling
  • Multi-scale modeling
  • Quantum mechanics molecular mechanics
  • Coarse grained
  • Hybrid methods
  • Force fields
  • Polarization & electronic effects
  • Ion solvation and conduction
  • Substrate transport
  • Biological systems
  • Enzymatic catalysis
  • Membrane proteins
  • Cell membranes

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Molecules - ISSN 1420-3049