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The Interaction Between Cell and Virus, 3rd Edition

A special issue of International Journal of Molecular Sciences (ISSN 1422-0067). This special issue belongs to the section "Molecular Microbiology".

Deadline for manuscript submissions: 20 April 2026 | Viewed by 707

Special Issue Editor


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Guest Editor
Department of Cell Biology, Kyoto Pharmaceutical University, Kyoto 607-8412, Japan
Interests: Kaposi’s sarcoma-associated herpesvirus post-translational modification proteasome ubiquitin virus
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Special Issue Information

Dear Colleagues,

This Special Issue follows the publication of the first edition on “The Interaction Between Cell and Virus” (https://www.mdpi.com/journal/ijms/special_issues/Interaction_Cell_and_Virus)” and “The Interaction Between Cell and Virus, 2nd Edition” (https://www.mdpi.com/journal/ijms/special_issues/R9T3G1HP37)”.

Viral infections cause various diseases in host species. Antiviral medications can help relieve the symptoms of some viruses by inhibiting viral enzymes or virus-mediated events. However, over the past half century, very few antiviral drugs (excluding anti-HCV drugs) have been developed for use in the treatment of serious and life-threatening viral infections.

A fundamental step for the effective infection and replication of all viruses is the interaction between cells and the virus. This is achieved through the dysregulation and exploitation of host cell functions (e.g., gene expression, signal transduction, metabolic process, intracellular transport, organelle biogenesis or communication, apoptosis, protein degradation, and immune response) by viral molecules, such as viral proteins and microRNA. Viruses hijack the appropriate cellular functions for the establishment of infection, persistent infection, prolonging survival, the control of cell proliferation, anti-apoptosis, and the evasion of immune surveillance in infected cells. Viruses manipulate these cellular functions in order to create a favorable environment for the virus or the virus-infected cell. However, the host species exerts antiviral effects on virus infection through the interaction between cells and the virus.

A better understanding of the interaction between viruses and host cells could provide new insights into the process of pathogenesis, immune disruption (or activation), and tumorigenesis triggered by viruses and may provide a theoretical basis for the development of novel therapeutic interventions against infectious diseases.

For this Special Issue, original research articles, review articles and short communications are welcome. Research areas of interest include the cell–virus interaction involved in viral replication, gene expression, latent or lytic infection, viral structural proteins and enzymes, virus assembly, cell signaling pathways, post-translational modification, host factors, virus immune evasion, host immune response, viral tumorigenesis or disease, antiviral medication, vaccine, animal models, and gene therapy.

Prof. Dr. Masahiro Fujimuro
Guest Editor

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Keywords

  • viral replication
  • gene expression
  • lytic infection
  • viral structure
  • viral assembly
  • cell signaling pathway
  • post-translational modification
  • immune evasion
  • viral tumorigenesis
  • antiviral medication

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Published Papers (1 paper)

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Research

28 pages, 5831 KB  
Article
An Italian Single-Center Genomic Surveillance Study: Two-Year Analysis of SARS-CoV-2 Spike Protein Mutations
by Riccardo Cecchetto, Emil Tonon, Asia Palmisano, Anna Lagni, Erica Diani, Virginia Lotti, Marco Mantoan, Livio Montesarchio, Francesca Palladini, Giona Turri and Davide Gibellini
Int. J. Mol. Sci. 2025, 26(15), 7558; https://doi.org/10.3390/ijms26157558 - 5 Aug 2025
Viewed by 500
Abstract
The repeated occurrence of SARS-CoV-2 variants, largely driven by virus–host interactions, was and will remain a public health concern. Spike protein mutations shaped viral infectivity, transmissibility, and immune escape. From February 2022 to April 2024, a local genomic surveillance program in Verona, Italy, [...] Read more.
The repeated occurrence of SARS-CoV-2 variants, largely driven by virus–host interactions, was and will remain a public health concern. Spike protein mutations shaped viral infectivity, transmissibility, and immune escape. From February 2022 to April 2024, a local genomic surveillance program in Verona, Italy, was conducted on 1333 SARS-CoV-2-positive nasopharyngeal swabs via next generation full-length genome sequencing. Spike protein mutations were classified based on their prevalence over time. Mutations were grouped into five categories: fixed, emerging, fading, transient, and divergent. Notably, some divergent mutations displayed a “Lazarus effect,” disappearing and later reappearing in new lineages, indicating potential adaptive advantages in specific genomic contexts. This two-year surveillance study highlights the dynamic nature of spike protein mutations and their role in SARS-CoV-2 evolution. The findings underscore the need for ongoing mutation-focused genomic monitoring to detect early signals of variant emergence, especially among mutations previously considered disadvantageous. Such efforts are critical for driving public health responses and guiding future vaccine and therapeutic strategies. Full article
(This article belongs to the Special Issue The Interaction Between Cell and Virus, 3rd Edition)
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