The Application of Microorganisms and Plants in Soil Improvement

A special issue of Biology (ISSN 2079-7737). This special issue belongs to the section "Microbiology".

Deadline for manuscript submissions: closed (31 December 2025) | Viewed by 4454

Special Issue Editors


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Guest Editor
School of Energy and Environmental Engineering, Univeristy of Science and Technology Beijing, Beijing 100083, China
Interests: environmental biotechnology; microbial ecology; rhizosphere microbial interactions

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Guest Editor
Institute of Resources and Ecological Environment, Ganjiang Innovation Academy, Chinese Academy of Sciences, Ganzhou 341119, China
Interests: environmental microorganisms; soil nutrient cycling; phytoremediation

Special Issue Information

Dear Colleagues,

Soil degradation has become a serious global environmental problem, directly endangering the foundation and environment of human survival. Therefore, it is imperative to develop and deploy innovative and specific improvement strategies to efficiently restore the ecological functions of soil. Here, microorganisms and plants play a significant role in soil improvement and ecological function restoration, and are thus significant topics worthy of attention.

We are pleased to invite you to contribute new insights to this Special Issue of Biology, a journal published by MDPI, entitled “The Application of Microorganisms and Plants in Soil Improvement”. This Special Issue aims to provide an open sharing platform for innovative achievements in fields such as biotechnology, microbial remediation, plant–microbe interactions, and soil ecological restoration.

In this Special Issue, original research articles and reviews are welcome. Research areas may include (but are not limited to) the following:

(1) New improvement methods, especially biological methods.

(2) Measures for restoring soil ecological functions.

(3) Plant–soil–microbe interactions.

(4) Dynamics and diversity of microbial communities.

(5) The promoting effect of microbial metabolism on plant growth.

(6) The impact of improvement measures on soil health and crop yield.

We look forward to receiving your contributions.

Dr. Zedong Teng
Dr. Xiaoliang Jiang
Guest Editors

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Keywords

  • environmental microbiology
  • microbial diversity
  • microbial metabolism
  • nutrient transformation
  • plant growth promotion
  • rhizosphere effect
  • soil improvement

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Published Papers (3 papers)

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Research

19 pages, 1390 KB  
Article
Heterotrophic Soil Microbes at Work: Short-Term Responses to Differentiated Fertilization Inputs
by Florin Aonofriesei, Alina Giorgiana Brotea (Andriescu) and Enuță Simion
Biology 2026, 15(1), 41; https://doi.org/10.3390/biology15010041 - 26 Dec 2025
Viewed by 597
Abstract
The interaction between organic and inorganic nutrients, bacterial communities, and soil fertility has been well documented over time. Conventional agricultural systems heavily utilize both inorganic and organic fertilizers, each exerting distinct effects on soil microbial dynamics and plant growth. The objective of our [...] Read more.
The interaction between organic and inorganic nutrients, bacterial communities, and soil fertility has been well documented over time. Conventional agricultural systems heavily utilize both inorganic and organic fertilizers, each exerting distinct effects on soil microbial dynamics and plant growth. The objective of our experiments was to identify the most effective fertilization strategy for improving the biological quality of a microbiologically impoverished and low-productivity soil. To this end, four fertilization strategies were evaluated: (i) organic fertilizers characterized by a high content of organic carbon (Fertil 4-5-7—variant 1); (ii) organic fertilizers with 12% organic nitrogen from proteins (Bio Ostara N—variant 2) (iii) combined inorganic–organic fertilizers (P35 Bio—variant 3) and (iv) mineral (inorganic) fertilizers (BioAktiv—variant V4). This study aimed to assess the short-term effects of fertilizers with varying chemical compositions on the density of cultivable heterotrophic bacteria and their associated dehydrogenase (DH) activity in a petrocalcic chernozem soil containing pedogenic carbonates. Soil sampling was conducted according to a randomized block design, comprising four replicates per treatment (control plus four fertilizer types). The enumeration of cultivable bacteria was performed using Nutrient Agar and A2R Agar media, whereas dehydrogenase activity (DHA) was quantified based on the reduction of 2,3,5-triphenyl-2H-tetrazolium chloride (TTC) to 1,3,5-triphenyl-tetrazolium formazan (TPF) by bacterial dehydrogenase enzymes. Marked differences were observed in both parameters between the plots amended with inorganic fertilizers and those treated with organic fertilizers, as well as among the organic fertilizer treatments of varying composition. The most pronounced increases in both bacterial density and dehydrogenase activity (DHA) were recorded in the plots receiving the fertilizer with a high organic nitrogen content. In this treatment, the maximum bacterial population density reached 6.25 log10 CFU g−1 dry soil after approximately two months (May), followed by a significant decline starting in July. In contrast, DHA exhibited a more rapid response, reaching its peak in April (42.75 µg TPF g−1 soil), indicating an earlier DHA activation of microbial metabolism. This temporal lag between the two parameters suggests that enzymatic activity responded more swiftly to the nutrient inputs than did microbial biomass proliferation. For the other two organic fertilizer variants, bacterial population dynamics were broadly similar, with peak densities recorded in June, ranging from 5.98 log10 CFU g−1 soil (V3) to 6.03 log10 CFU g−1 soil (V1). A comparable trend was observed in DHA: in V3, maximum DHA was attained in June (30 µg TPF g−1 soil), after which it remained relatively stable, whereas in V1, it peaked in June (24.05 µg TPF g−1 soil) and subsequently declined slightly toward the end of the experimental period. Overall, the temporal dynamics of bacterial density and DHA demonstrated a strong dependence on the quality and biodegradability of the organic matter supplied by each fertilizer. Both parameters were consistently lower under inorganic fertilization compared with organic treatments, suggesting that the observed increases in microbial density and activity were primarily mediated by the enhanced availability of organic substrates. The relationship between the density of culturable heterotrophic bacteria and dehydrogenase (DH) activity was strongly positive (r = 0.79), indicating a close functional linkage between bacterial density and oxidative enzyme activity. This connection suggests that the culturable fraction of the heterotrophic microbial community plays a key role in the early stages of organic matter mineralization derived from the applied fertilizers, particularly in the decomposition of easily degradable substrates. Full article
(This article belongs to the Special Issue The Application of Microorganisms and Plants in Soil Improvement)
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23 pages, 6504 KB  
Article
Response Characteristics of Biological Soil Crusts Under Different Afforestation Measures in Alpine Sandy Land
by Shaobo Du, Huichun Xie, Gaosen Zhang, Feng Qiao, Guigong Geng and Chongyi E
Biology 2025, 14(5), 532; https://doi.org/10.3390/biology14050532 - 11 May 2025
Cited by 2 | Viewed by 1306
Abstract
Desertification, which may lead to land degradation, is a significant global ecological issue. Biological soil crusts (BSCs) can play a role in sand fixation, carbon sequestration, and the improvement in soil functions in the ecological restoration of sandy soil. Therefore, elucidating the responses [...] Read more.
Desertification, which may lead to land degradation, is a significant global ecological issue. Biological soil crusts (BSCs) can play a role in sand fixation, carbon sequestration, and the improvement in soil functions in the ecological restoration of sandy soil. Therefore, elucidating the responses of BSCs to afforestation measures in alpine sandy areas is necessary to guide vegetation configuration in sandy ecosystems and enhance the effectiveness of sand fixation measures to prevent desertification. Herein, we determined the physicochemical properties and enzyme activities of bare sand (no crust) and algal and moss crusts collected from four sites subjected to different afforestation measures, including Salix cheilophila + Populus simonii (WLYY), Salix psammophila + S. cheilophila (SLWL), Artemisia ordosica + Caragana korshinskii (SHNT), and C. korshinskii (NT80) plantations. High-throughput sequencing was also employed to analyze bacterial community structure in BSCs. The results revealed that fine particle contents in algal and moss crusts were higher than in bare sand. During the succession from bare sand to algae to moss crust, their enzymatic activities and water and nutrient contents tended to increase. And the diversity of bacterial communities changed little in the SLWL sample points, while the richness showed a trend of first decreasing and then increasing, but bacterial community richness and diversity first decreased and then increased at the other sites. Among the four measures, SLWL enhanced nutrient contents, enzyme activities, and bacterial community richness and diversity in BSCs relatively more effectively. Alkaline-hydrolyzable nitrogen and soil organic matter were the key factors impacting bacterial community structures in BSCs under the four afforestation measures. From the perspective of BSCs, the results can provide a reference for the prevention and control strategies of other alpine sandy soils. Full article
(This article belongs to the Special Issue The Application of Microorganisms and Plants in Soil Improvement)
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16 pages, 2130 KB  
Article
Application of Biochar on Soil Improvement and Speciation Transformation of Heavy Metal in Constructed Wetland
by Yuan Zhou, Xiaoqin Nie, Yao Zhao, Liqiu Zhang, Yatian Cheng, Cancan Jiang, Wenbin Zhao, Xiangchun Wang and Chao Yang
Biology 2025, 14(5), 515; https://doi.org/10.3390/biology14050515 - 7 May 2025
Cited by 2 | Viewed by 2040
Abstract
The pyrolysis of sewage sludge into biochar, enhanced by incorporating agriculture waste rich in inorganic minerals and lignocellulosic compounds, provides an effective approach for achieving sludge-harmless treatment and resourceful utilization. In this study, sewage sludge and maize straw-based biochar (SMB) was prepared using [...] Read more.
The pyrolysis of sewage sludge into biochar, enhanced by incorporating agriculture waste rich in inorganic minerals and lignocellulosic compounds, provides an effective approach for achieving sludge-harmless treatment and resourceful utilization. In this study, sewage sludge and maize straw-based biochar (SMB) was prepared using the co-pyrolysis method, and the effects of different application ratios (0%, 1%, 3%, and 5%, w/w) of SMB on soil properties, ryegrass growth, microbial community structure, and Pb content and speciation in the contaminated soil of constructed wetlands were investigated. The results showed that SMB had a high carbon content (28.58%) and was rich in functional groups (e.g., -C-O, -C-N). The results indicated that increasing SMB dosage (0–5% w/w) in Pb-contaminated soil elevated soil pH from 6.40 to 7.93, cation-exchange capacity (CEC) from 30.59 to 79.03 cmol/kg (+158%), and organic carbon content by 65% (from 176.79 mg/kg to 107.3 mg/kg), while reducing available phosphorus and potassium by 20% and 30%, respectively, resulting in a 6% decline in ryegrass leaf length. SMB application enriched Pb-resistant bacteria (e.g., Sphingomonas abundance increased from 10.3% to 11.2%) and enhanced Pb immobilization. After 55 days, the total soil Pb increased by 33%, and the residual fraction Pb significantly increased by 7.3% to 21.7%, driven by functional group complexation, ion exchange, pH, and CEC improvements. Full article
(This article belongs to the Special Issue The Application of Microorganisms and Plants in Soil Improvement)
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