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Non-Coding RNA, Volume 11, Issue 3

2025 June - 19 articles

Cover Story: CHROMR is a primate-specific long noncoding RNA with emerging roles in homeostasis and pathophysiology. Like many lncRNAs, CHROMR accumulates in both the nucleus and the cytoplasm, and it assumes distinct functions in each of these cellular compartments. In the nucleus, CHROMR sequesters a transcriptional repressor complex to activate interferon-stimulated gene expression and antiviral immunity. In the cytoplasm, CHROMR competitively inhibits microRNAs involved in cholesterol efflux and cell cycle regulation, thereby impacting gene pathways involved in reverse cholesterol transport, HDL biogenesis, and tumor growth. In this review, we detail the multifaceted functions of CHROMR in cholesterol metabolism, innate immunity, and cancer progression. View this paper
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Articles (19)

  • Brief Report
  • Open Access
2,230 Views
11 Pages

Insights into miRNAs of the Stingless Bee Melipona quadrifasciata

  • Dalliane Oliveira Soares,
  • Lucas Yago Melo Ferreira,
  • Gabriel Victor Pina Rodrigues,
  • João Pedro Nunes Santos,
  • Ícaro Santos Lopes,
  • Lucas Barbosa de Amorim Conceição,
  • Tatyana Chagas Moura,
  • Isaque João da Silva de Faria,
  • Roenick Proveti Olmo and
  • Eric Roberto Guimarães Rocha Aguiar
  • + 2 authors

MicroRNAs (miRNAs) are key post-transcriptional regulators involved in a wide range of biological processes in insects, yet little is known about their roles in stingless bees. Here, we present the first characterization of miRNAs in Melipona quadrif...

(This article belongs to the Section Small Non-Coding RNA)
  • Article
  • Open Access
2 Citations
1,984 Views
23 Pages

Diagnostic Potential of Exosomal and Non-Exosomal Biomarkers in Lung Cancer: A Comparative Analysis Using a Rat Model of Lung Carcinogenesis

  • Sherien M. El-Daly,
  • Sahar S. Abdelrahman,
  • Amira Mohamed Abd El-Jawad,
  • Mahmoud A. Abdel-Monem and
  • Gamila S. M. El-Saeed

Background: Identifying liquid biopsy biomarkers with high efficacy is crucial for cancer diagnosis. Exosomal cargo, including miRNAs and proteins, offers enhanced stability in biofluids compared with their free circulating forms, but direct comparis...

(This article belongs to the Special Issue Non-coding RNA as Biomarker in Cancer)
  • Article
  • Open Access
1 Citations
1,226 Views
20 Pages

Patterns of Circulating piRNAs in the Context of a Single Bout of Exercise: Potential Biomarkers of Exercise-Induced Adaptation?

  • Caroline Eva Riedel,
  • Javier Ibáñez,
  • Annunziata Fragasso,
  • Angelika Schmitt,
  • Manuel Widmann,
  • Felipe Mattioni Maturana,
  • Andreas M. Niess and
  • Barbara Munz

Background: Physical activity induces a range of physiological and molecular adaptations, particularly affecting skeletal muscle and the cardiovascular system, regulating both tissue architecture and metabolic pathways. Emerging evidence suggests tha...

(This article belongs to the Section Detection and Biomarkers of Non-Coding RNA)
  • Article
  • Open Access
2 Citations
2,317 Views
15 Pages

Role of Compensatory miRNA Networks in Cognitive Recovery from Heart Failure

  • Verena Gisa,
  • Md Rezaul Islam,
  • Dawid Lbik,
  • Raoul Maximilian Hofmann,
  • Tonatiuh Pena,
  • Dennis Manfred Krüger,
  • Susanne Burkhardt,
  • Anna-Lena Schütz,
  • Farahnaz Sananbenesi and
  • Andre Fischer
  • + 1 author

Background: Heart failure (HF) is associated with an increased risk of cognitive impairment and hippocampal dysfunction, yet the underlying molecular mechanisms remain poorly understood. This study aims to investigate the role of microRNA (miRNA) net...

(This article belongs to the Section Clinical Applications of Non-Coding RNA)
  • Review
  • Open Access
1 Citations
1,920 Views
17 Pages

CHROMR is a primate-specific long noncoding RNA with emerging roles in homeostasis and pathophysiology. Elevated blood levels of CHROMR have been observed in patients with cardiovascular disease and several cancers, where it is correlated with poor c...

(This article belongs to the Section Long Non-Coding RNA)
  • Article
  • Open Access
2,352 Views
21 Pages

Human Papillomavirus-Encoded microRNAs as Regulators of Human Gene Expression in Anal Squamous Cell Carcinoma: A Meta-Transcriptomics Study

  • Daniel J. García,
  • Marco A. Pulpillo-Berrocal,
  • José L. Ruiz,
  • Eduardo Andrés-León and
  • Laura C. Terrón-Camero

Introduction: Anal squamous cell carcinoma (ASCC) is a rare but increasingly common gastrointestinal malignancy, mainly associated with oncogenic human papillomaviruses (HPVs). The role of non-coding RNAs (ncRNAs) in tumorigenesis is recognized, but...

  • Review
  • Open Access
6 Citations
2,554 Views
27 Pages

The poultry farming industry encounters considerable obstacles stemming from viral diseases, resulting in elevated mortality rates and substantial economic losses. Current research highlights the significant involvement of long non-coding RNAs (lncRN...

(This article belongs to the Section Long Non-Coding RNA)
  • Article
  • Open Access
1 Citations
1,581 Views
25 Pages

Polychlorinated Biphenyl Exposure Alters tRNA Transcriptome in High-Fat Diet-Fed Mouse Liver

  • Carolyn M. Klinge,
  • Julia H. Chariker,
  • Kellianne M. Piell,
  • Belinda J. Petri,
  • Eric C. Rouchka and
  • Matthew C. Cave

Background/Objectives: Exposure of high-fat diet (HFD)-fed mice to polychlorinated biphenyls (PCBs) results in metabolic dysfunction-associated steatotic liver disease (MASLD) and progression to metabolic dysfunction-associated steatohepatitis (MASH)...

  • Correction
  • Open Access
1 Citations
838 Views
1 Page

Correction: Schlösser et al. Anti-HIV-1 Effect of the Fluoroquinolone Enoxacin and Modulation of Pro-Viral hsa-miR-132 Processing in CEM-SS Cells. Non-Coding RNA 2025, 11, 8

  • Verena Schlösser,
  • Helen Louise Lightfoot,
  • Christine Leemann,
  • Seyedeh Elnaz Banijamali,
  • Aathma Merin Bejoy,
  • Shashank Tiwari,
  • Jeffrey L. Schloßhauer,
  • Valentina Vongrad,
  • Andreas Brunschweiger and
  • Jochen Imig
  • + 2 authors

Seyedeh Elnaz Banijamali was not included as an author in the original publication [...]

  • Article
  • Open Access
1 Citations
2,139 Views
23 Pages

Analysis of RNA Transcribed by RNA Polymerase III from B2 SINEs in Mouse Cells

  • Olga R. Borodulina,
  • Sergey A. Kosushkin,
  • Ilia G. Ustyantsev,
  • Nikita S. Vassetzky and
  • Dmitri A. Kramerov

Background/Objectives: SINEs (short interspersed elements) are eukaryotic non-autonomous retrotransposons. They are transcribed by RNA polymerase III (pol III) and generate non-coding RNAs. The 3′ end of many mammalian SINEs contains a polyaden...

  • Feature Paper
  • Article
  • Open Access
1 Citations
2,692 Views
15 Pages

Small RNA Landscape of Platelet Dust: Platelet-Derived Extracellular Vesicles from Patients with Non-Small-Cell Lung Cancer

  • Mafalda Antunes-Ferreira,
  • Ilias Glogovitis,
  • Diogo Fortunato,
  • Silvia D’Ambrosi,
  • Mariona Colom Saborit,
  • Galina Yahubyan,
  • Vesselin Baev,
  • Michael Hackenberg,
  • Natasa Zarovni and
  • Danijela Koppers-Lalic
  • + 1 author

Background: Platelet-derived Extracellular Vesicles, or “Platelet Dust” (PD), are reported as the most-abundant extracellular vesicles in plasma. However, the PD molecular content, especially the small RNA profile, is still poorly charact...

(This article belongs to the Special Issue Extracellular Vesicles and ncRNA)
  • Systematic Review
  • Open Access
4 Citations
2,240 Views
14 Pages

Expression of miRNAs in the Relationship Between Periodontitis and Cardiovascular Diseases: A Systematic Review

  • Montiel Guerrero-Sabater,
  • María Cosín-Villanueva,
  • Pedro Almiñana-Pastor and
  • Andrés López-Roldán

Objectives: Periodontitis is a chronic inflammatory disease that could influence the pathophysiology of cardiovascular diseases through immunoinflammatory and epigenetic mechanisms. MicroRNAs (miRNAs) could be key mediators in this interaction, regul...

(This article belongs to the Topic MicroRNA: Mechanisms of Action, Physio-Pathological Implications, and Disease Biomarkers, 3rd Edition)
  • Review
  • Open Access
12 Citations
6,410 Views
45 Pages

Bacterial pathogens have evolved diverse strategies to infect hosts, evade immune responses, and establish successful infections. While the role of transcription factors in bacterial virulence is well documented, emerging evidence highlights the sign...

  • Review
  • Open Access
4 Citations
4,322 Views
15 Pages

Human XIST: Origin and Divergence of a cis-Acting Silencing RNA

  • Maria Jose Navarro-Cobos and
  • Carolyn J. Brown

Dimorphism of sex chromosomes often leads to a need for dosage compensation. In eutherian mammals, XIST, a long non-coding RNA, is expressed from the X chromosome that will be silenced, triggering X-chromosome inactivation (XCI). XIST originated from...

(This article belongs to the Section Evolution of Non-Coding RNA)
  • Systematic Review
  • Open Access
7 Citations
4,815 Views
30 Pages

Background/Objectives: Competing endogenous RNAs (ceRNA) are molecules that compete for the binding to a microRNA (miR). Usually, there are two ceRNA, one of which is a protein-coding RNA (mRNA), with the other being a long non-coding RNA (lncRNA). T...

(This article belongs to the Special Issue Non-coding RNA as Biomarker in Cancer)
  • Article
  • Open Access
2 Citations
2,990 Views
24 Pages

Bromodomain and Extra-Terminal Family Proteins BRD2, BRD3, and BRD4 Contribute to H19-Dependent Transcriptional Regulation of Cell Adhesion Molecules, Modulating Metastatic Dissemination Program in Prostate Cancer

  • Valeria Pecci,
  • Melissa Borsa,
  • Aurora Aiello,
  • Sara De Martino,
  • Luca Cis,
  • Cristian Ripoli,
  • Dante Rotili,
  • Francesco Pierconti,
  • Francesco Pinto and
  • Simona Nanni
  • + 3 authors

Background/Objectives: Metastatic prostate cancer (PCa) remains a major clinical challenge with limited therapeutic options. The long non-coding RNA H19 has been implicated in regulating cell adhesion molecules and collective migration, key features...

  • Article
  • Open Access
4,377 Views
28 Pages

Background/Objectives: X-inactive-specific transcript (XIST) is a factor that plays a role in neuroinflammation. This study investigated the role of XIST in neuronal development, neuroinflammation, myelination, and therapeutic responses within cerebr...

(This article belongs to the Section Long Non-Coding RNA)
  • Article
  • Open Access
6 Citations
2,100 Views
20 Pages

Background: Single-nucleotide polymorphisms (SNPs) are associated with multiple disorders and various cancer types. In the context of cancer, alterations within non-coding regions, specifically 3′ untranslated regions (3′ UTR), have prove...

  • Review
  • Open Access
4 Citations
2,627 Views
26 Pages

Adipocyte differentiation is a complex process in which pluripotent mesenchymal stem cells (MSCs) differentiate and develop into mature fat cells, also known as adipocytes. This process is controlled by various transcription factors, hormones, and si...

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Non-Coding RNA - ISSN 2311-553X