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Proteomes, Volume 13, Issue 4

2025 December - 22 articles

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Articles (22)

  • Communication
  • Open Access
1 Citations
2,406 Views
13 Pages

A Proteomic View of Butterfly Metamorphosis

  • Andrew Hesketh,
  • Juned Kadiwala,
  • Vaishnavi Ravikumar,
  • Ana Rita Garizo and ,
  • Patrícia Beldade,
  • Marjorie Fournier and
  • Rameen Shakur
  • + 2 authors+ 0 author

18 December 2025

Background: Insect metamorphosis is one of the most fascinating developmental processes in the natural world. Complete metamorphosis requires the breakdown and reorganisation of larval tissues and the coordinated construction and development of adult...

  • Article
  • Open Access
3 Citations
3,315 Views
23 Pages

Comprehensive Insights into Obesity and Type 2 Diabetes from Protein Network, Canonical Pathway, Phosphorylation and Antimicrobial Peptide Signatures of Human Serum

  • Petra Magdolna Bertalan,
  • Erdenetsetseg Nokhoijav,
  • Ádám Pap,
  • George C. Neagu and ,
  • Miklós Káplár,
  • Zsuzsanna Darula,
  • Gergő Kalló,
  • Laszlo Prokai and
  • Éva Csősz
  • + 4 authors+ 0 author

17 December 2025

Background: Obesity is a major risk factor for type 2 diabetes (T2D); however, the molecular links between these conditions are not fully understood. Methods: We performed an integrative serum proteomics study on samples from 134 individuals (healthy...

(This article belongs to the Section Proteomics of Human Diseases and Their Treatments)
  • Article
  • Open Access
2,260 Views
22 Pages

Proteome Profiling of Rabies-Infected and Uninfected Dog Brain Tissues, Cerebrospinal Fluids and Serum Samples

  • Ukamaka U. Eze,
  • Rethabile Mokoena,
  • Kenneth I. Ogbu,
  • Sinegugu Dubazana and ,
  • Ernest C. Ngoepe,
  • Mparamoto Munangatire,
  • Romanus C. Ezeokonkwo,
  • Boniface M. Anene,
  • Sindisiwe G. Buthelezi and
  • Claude T. Sabeta
  • + 5 authors+ 0 author

15 December 2025

Background: Rabies is among the oldest known zoonotic viral diseases and is caused by members of the Lyssavirus genus. The prototype species, Lyssavirus rabies, effectively evades the host immune response, allowing the infection to progress unnoticed...

(This article belongs to the Section Animal Proteomics)
  • Article
  • Open Access
2,667 Views
24 Pages

Proteomic Profiling of Non-Muscle Invasive Bladder Cancer Reveals Stage-Specific Molecular Signatures and Prognostic Biomarkers

  • Lorenza Vantaggiato,
  • Marco Frisenda,
  • Enxhi Shaba,
  • Chiara Splendore and ,
  • Beatrice Sciarra,
  • Luca Bini,
  • Alessandro Sciarra and
  • Claudia Landi
  • + 3 authors+ 0 author

10 December 2025

Background: Non-muscle invasive bladder cancer (NMIBC) comprises high-grade (HG) and low-grade (LG) variants, classified by aggressiveness, recurrence risk, and stage—either non-invasive (pTa) or invading the lamina propria (pT1). Cystoscopy re...

(This article belongs to the Section Identification of Potential Biomarkers and Potential Therapeutic Targets)
  • Article
  • Open Access
1,934 Views
16 Pages

Insights into Missense SNPs on Amyloidogenic Proteins

  • Fotios P. Galanis,
  • Avgi E. Apostolakou,
  • Georgia I. Nasi,
  • Zoi I. Litou and
  • Vassiliki A. Iconomidou

2 December 2025

Background: Amyloidogenic proteins, a heterogenous group of proteins characterized by their ability to form amyloid fibrils, lead to pathological conditions when they undergo abnormal folding and self-assembly. Missense single-nucleotide polymorphism...

  • Article
  • Open Access
2,870 Views
23 Pages

25 November 2025

Background: Multiple myeloma (MM) is essentially an incurable cancer, but treatments with proteasome inhibitors are widely used clinically to extend patient survival. While the mechanisms of proteasome inhibition by Bortezomib are well known, the cel...

(This article belongs to the Section Proteomics Technology and Methodology Development)
  • Article
  • Open Access
2,529 Views
20 Pages

Comparative Proteomic Analysis of Aqueous Humor, Anterior Lens Capsules, and Crystalline Lenses in Different Human Cataract Subtypes Versus Healthy Controls

  • Christina Karakosta,
  • Martina Samiotaki,
  • Anastasios Bisoukis,
  • Konstantinos I. Bougioukas and ,
  • George Panayotou,
  • Nantieznta Kyriakidou,
  • Konstantinos Moschou and
  • Marilita M. Moschos
  • + 3 authors+ 0 author

21 November 2025

Background: The aim of this study is to investigate the pathophysiology of cataract by analyzing signaling pathways in three sample types obtained from four different lens groups: age-related (ARC), diabetic (DC), post-vitrectomy cataract (PVC) and c...

(This article belongs to the Special Issue Proteomics in Chronic Diseases: Issues and Challenges)
  • Article
  • Open Access
1 Citations
2,458 Views
22 Pages

Surveying the Proteome-Wide Landscape of Mitoxantrone and Examining Drug Sensitivity in BRCA1-Deficient Ovarian Cancer Using Quantitative Proteomics

  • Savanna Wallin,
  • Sneha Pandithar,
  • Sarbjit Singh,
  • Siddhartha Kumar and ,
  • Amarnath Natarajan,
  • Gloria E. O. Borgstahl and
  • Nicholas Woods
  • + 2 authors+ 0 author

14 November 2025

Background: Mitoxantrone (MX) is regularly used to treat several cancers. Despite its long history in the clinic, recent studies continue to unveil novel protein targets. These targets may contribute to the cytotoxic effects of the drug, as well as p...

(This article belongs to the Section Identification of Potential Biomarkers and Potential Therapeutic Targets)
  • Review
  • Open Access
3 Citations
5,204 Views
35 Pages

Proteomics in Allopolyploid Crops: Stress Resilience, Challenges and Prospects

  • Tanushree Halder,
  • Roopali Bhoite,
  • Shahidul Islam,
  • Guijun Yan and ,
  • Md. Nurealam Siddiqui,
  • Md. Omar Kayess and
  • Kadambot H. M. Siddique
  • + 2 authors+ 0 author

11 November 2025

Polyploid crops such as wheat, Brassica, and cotton are critical in the global agricultural and economic system. However, their productivity is threatened increasingly by biotic stresses such as disease, and abiotic stresses such as heat, both exacer...

(This article belongs to the Special Issue Plant Genomics and Proteomics)
  • Article
  • Open Access
2,788 Views
32 Pages

Proteomic Analysis of Plant-Derived hIGF-1-Fc Reveals Proteome Abundance Changes Associated with Wound Healing and Cell Proliferation

  • Kittinop Kittirotruji,
  • Utapin Ngaokrajang,
  • Visarut Buranasudja,
  • Ittichai Sujarittham and ,
  • San Yoon Nwe,
  • Pipob Suwanchaikasem,
  • Kaewta Rattanapisit,
  • Christine Joy I. Bulaon and
  • Waranyoo Phoolcharoen
  • + 4 authors+ 0 author

7 November 2025

Background: Human insulin-like growth factor 1 (hIGF-1) plays a key role in cell proliferation and tissue repair. While plant expression systems offer a cost-effective and scalable alternative for recombinant protein production, the molecular effects...

  • Article
  • Open Access
1,750 Views
12 Pages

6 November 2025

Background: Poxviruses constitute a family of large dsDNA viruses that can infect a plethora of species including humans. Historically, poxviruses have caused a health burden in multiple outbreaks. The large genome of poxviruses favors reverse vaccin...

  • Article
  • Open Access
2 Citations
3,408 Views
22 Pages

6 November 2025

Background: The search for reliable aging biomarkers using proteomic databases and large-scale proteomic studies presents a significant challenge in biogerontology. Existing proteomic databases and studies contain valuable information; however, there...

  • Article
  • Open Access
2,100 Views
26 Pages

3 November 2025

Background: Molecular mimicry contributes to the development of unwanted responses to self-antigens. Autoimmune phenomena have been observed in diseases caused by Aedes aegypti-transmitted arboviruses, but the occurrence of mimicry between salivary a...

  • Article
  • Open Access
3 Citations
2,467 Views
23 Pages

Identification of Protein Markers for Chronic Ischemic Heart Disease Through Integrated Analysis of the Human Plasma Proteome and Genome-Wide Association Data

  • Chunyang Ren,
  • Gan Qiao,
  • Jianping Wu,
  • Yongxiang Lu and ,
  • Minghua Liu and
  • Chunxiang Zhang
  • + 1 author+ 0 author

3 November 2025

Background: Chronic ischemic heart disease (CIHD) is characterized by persistent myocardial ischemic due to long-term reduced coronary blood flow. In the past, we mainly relied on surgical intervention or drug therapy to alleviate symptoms, but effec...

(This article belongs to the Section Identification of Potential Biomarkers and Potential Therapeutic Targets)
  • Review
  • Open Access
7 Citations
2,799 Views
21 Pages

27 October 2025

Protein–protein interactions (PPIs) are significant in understanding the complex molecular processes of plant growth, disease resistance, and stress responses. Machine learning (ML) has recently emerged as a powerful tool that can predict and a...

(This article belongs to the Special Issue Plant Genomics and Proteomics)
  • Review
  • Open Access
19 Citations
4,471 Views
22 Pages

Marine Bioactive Peptides in the Regulation of Inflammatory Responses: Current Trends and Future Directions

  • D. M. N. M. Gunasekara,
  • H. D. T. U. Wijerathne,
  • Lei Wang,
  • Hyun-Soo Kim and
  • K. K. A. Sanjeewa

13 October 2025

Marine-derived bioactive peptides (MBPs) are emerging as promising natural agents for regulating inflammatory responses. MBPs, typically obtained through enzymatic hydrolysis of proteins from various marine organisms such as fish, mollusks, and algae...

  • Article
  • Open Access
1 Citations
1,841 Views
18 Pages

Temporal and Spatial Profiling of Escherichia coli O157:H7 Surface Proteome: Insights into Intestinal Colonisation Dynamics In Vivo

  • Ricardo Monteiro,
  • Ingrid Chafsey,
  • Charlotte Cordonnier,
  • Valentin Ageorges and ,
  • Didier Viala,
  • Michel Hébraud,
  • Valérie Livrelli,
  • Alfredo Pezzicoli,
  • Mariagrazia Pizza and
  • Mickaël Desvaux
  • + 5 authors+ 0 author

10 October 2025

Background: EHEC O157:H7 causes severe gastrointestinal illness by first colonizing the large intestine. It intimately attaches to the epithelial lining, orchestrating distinctive “attaching and effacing” lesions that disrupt the host&rsq...

  • Article
  • Open Access
1 Citations
3,531 Views
11 Pages

Protein-Predicted Obesity Phenotypes and Cardiovascular Events: A Secondary Analysis of UK Biobank Proteomics Data

  • Chang Liu,
  • Bojung Seo,
  • Qin Hui,
  • Peter W. F. Wilson and ,
  • Arshed A. Quyyumi and
  • Yan V. Sun
  • + 1 author+ 0 author

Background: Proteomic profiling may improve the understanding of obesity and cardiovascular risk prediction. This study explores the use of protein-predicted scores for body mass index (PPSBMI), body fat percentage (PPSBFP), and waist–hip ratio...

  • Article
  • Open Access
2 Citations
2,873 Views
17 Pages

Protein Structural Modeling Explains Rapid Oxidation in Poultry and Fish Myoglobins Compared to Livestock Myoglobins

  • Greeshma Sreejesh,
  • Surendranath P. Suman,
  • Gretchen G. Mafi,
  • Morgan M. Pfeiffer and
  • Ranjith Ramanathan

Background: This study aimed to investigate rapid oxidation in poultry and fish myoglobin compared to livestock myoglobin using protein structural differences and bioinformatics tools. Methods: Myoglobins from beef (Bos taurus), bison (Bos bison), sh...

  • Review
  • Open Access
5 Citations
3,338 Views
30 Pages

Extracellular Vesicle (EV) Proteomics in Corneal Regenerative Medicine

  • Zohreh Arabpour,
  • Hanieh Niktinat,
  • Firouze Hatami,
  • Amal Yaghmour and ,
  • Zarife Jale Yucel,
  • Seyyedehfatemeh Ghalibafan,
  • Hamed Massoumi,
  • Zahra Bibak Bejandi,
  • Majid Salehi and
  • Ali R. Djalilian
  • + 9 authors+ 4 authors

Corneal regeneration has gained growing interest in recent years, largely due to the limitations of conventional treatments and the persistent shortage of donor tissue. Among the emerging strategies, extracellular vehicles (EVs), especially those der...

(This article belongs to the Topic Multi-Omics in Precision Medicine)
  • Article
  • Open Access
1,853 Views
22 Pages

Proteomic Characterization of Primary Human Pancreatic Cancer Cell Lines Following Long-Term Exposure to Gemcitabine

  • Manoj Amrutkar,
  • Yuchuan Li,
  • Anette Vefferstad Finstadsveen,
  • Caroline S. Verbeke and
  • Ivar P. Gladhaug

Background: Gemcitabine (GEM) remains a cornerstone in the treatment of pancreatic cancer. Upon exposure to GEM, pancreatic cancer cells (PCCs) tend to adapt quickly to outcompete drug-induced cytotoxicity, thereby contributing to treatment failure....

(This article belongs to the Special Issue Proteomics in Chronic Diseases: Issues and Challenges)
  • Review
  • Open Access
22 Citations
5,945 Views
47 Pages

In Search of Ideal Solutions for Cancer Diagnosis: From Conventional Methods to Protein Biomarkers in Liquid Biopsy

  • Anca-Narcisa Neagu,
  • Pathea S. Bruno,
  • Claudiu-Laurentiu Josan,
  • Natalie Waterman and ,
  • Hailey Morrissiey,
  • Victor T. Njoku and
  • Costel C. Darie
  • + 2 authors+ 0 author

23 September 2025

Cancer detection has made significant progress, moving from conventional methods to innovative, non-invasive or minimally invasive approaches aimed at improving early diagnosis, precision, and treatment outcomes. This review examines current and emer...

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Proteomes - ISSN 2227-7382