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Genes, Volume 10, Issue 1

January 2019 - 71 articles

Cover Story: How epigenetic Modifications (Mods) of small RNAs facilitate adaptation and the way back to homeostasis. This occurs all the way from bacteria (black bacilli from our gut loosing their pili) to humans (blue fellows raising their hands). View this paper.
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Articles (71)

  • Article
  • Open Access
19 Citations
6,659 Views
19 Pages

De Novo Sequencing and Hybrid Assembly of the Biofuel Crop Jatropha curcas L.: Identification of Quantitative Trait Loci for Geminivirus Resistance

  • Nagesh Kancharla,
  • Saakshi Jalali,
  • J. V. Narasimham,
  • Vinod Nair,
  • Vijay Yepuri,
  • Bijal Thakkar,
  • VB Reddy,
  • Boney Kuriakose,
  • Neeta Madan and
  • Arockiasamy S

21 January 2019

Jatropha curcas is an important perennial, drought tolerant plant that has been identified as a potential biodiesel crop. We report here the hybrid de novo genome assembly of J. curcas generated using Illumina and PacBio sequencing technologies, and...

  • Article
  • Open Access
7 Citations
4,239 Views
16 Pages

21 January 2019

Background: CD34+ Endothelial Progenitor Cells (EPCs) play an important role in the recovery of injured endothelium and contribute to atherosclerosis (ATH) pathogenesis. Previously we described a potential atherogenic role for miR-125 that we aimed t...

  • Article
  • Open Access
39 Citations
6,821 Views
17 Pages

21 January 2019

Sugar transporter protein (STP) genes are involved in multiple biological processes, such as plant responses to various stresses. However, systematic analysis and functional information of STP family genes in Brassica oleracea are very limited. A com...

  • Review
  • Open Access
45 Citations
9,116 Views
16 Pages

Convergent Evolution of the Seed Shattering Trait

  • Valerio Di Vittori,
  • Tania Gioia,
  • Monica Rodriguez,
  • Elisa Bellucci,
  • Elena Bitocchi,
  • Laura Nanni,
  • Giovanna Attene,
  • Domenico Rau and
  • Roberto Papa

19 January 2019

Loss of seed shattering is a key trait in crop domestication, particularly for grain crops. For wild plants, seed shattering is a crucial mechanism to achieve greater fitness, although in the agricultural context, this mechanism reduces harvesting ef...

  • Article
  • Open Access
29 Citations
6,895 Views
13 Pages

Genetics and Genomic Regions Affecting Response to Newcastle Disease Virus Infection under Heat Stress in Layer Chickens

  • Perot Saelao,
  • Ying Wang,
  • Ganrea Chanthavixay,
  • Rodrigo A. Gallardo,
  • Anna Wolc,
  • Jack C. M. Dekkers,
  • Susan J. Lamont,
  • Terra Kelly and
  • Huaijun Zhou

18 January 2019

Newcastle disease virus (NDV) is a highly contagious avian pathogen that poses a tremendous threat to poultry producers in endemic zones due to its epidemic potential. To investigate host genetic resistance to NDV while under the effects of heat stre...

  • Article
  • Open Access
107 Citations
27,063 Views
11 Pages

A High-Quality De novo Genome Assembly from a Single Mosquito Using PacBio Sequencing

  • Sarah B. Kingan,
  • Haynes Heaton,
  • Juliana Cudini,
  • Christine C. Lambert,
  • Primo Baybayan,
  • Brendan D. Galvin,
  • Richard Durbin,
  • Jonas Korlach and
  • Mara K. N. Lawniczak

18 January 2019

A high-quality reference genome is a fundamental resource for functional genetics, comparative genomics, and population genomics, and is increasingly important for conservation biology. PacBio Single Molecule, Real-Time (SMRT) sequencing generates lo...

  • Article
  • Open Access
14 Citations
6,723 Views
21 Pages

Genomic and Transcriptomic Changes That Mediate Increased Platinum Resistance in Cupriavidus metallidurans

  • Md Muntasir Ali,
  • Ann Provoost,
  • Laurens Maertens,
  • Natalie Leys,
  • Pieter Monsieurs,
  • Daniel Charlier and
  • Rob Van Houdt

18 January 2019

The extensive anthropogenic use of platinum, a rare element found in low natural abundance in the Earth’s continental crust and one of the critical raw materials in the EU innovation partnership framework, has resulted in increased concentratio...

  • Article
  • Open Access
25 Citations
7,392 Views
13 Pages

EPA and DHA Inhibit Myogenesis and Downregulate the Expression of Muscle-related Genes in C2C12 Myoblasts

  • Jing Zhang,
  • Xin Xu,
  • Yan Liu,
  • Lin Zhang,
  • Jack Odle,
  • Xi Lin,
  • Huiling Zhu,
  • Xiuying Wang and
  • Yulan Liu

18 January 2019

This study was conducted to elucidate the biological effects of eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA) on cell proliferation, differentiation and gene expression in C2C12 myoblasts. C2C12 were treated with various concentrations o...

  • Review
  • Open Access
91 Citations
12,100 Views
14 Pages

18 January 2019

DNA methylation, catalyzed by DNA methyltransferases (DNMTs), is an epigenetic mark that needs to be faithfully replicated during mitosis in order to maintain cell phenotype during successive cell divisions. This epigenetic mark is located on the 5&p...

  • Review
  • Open Access
36 Citations
8,644 Views
15 Pages

18 January 2019

There is growing evidence highlighting the importance of monoubiquitination as part of the histone code. Monoubiquitination, the covalent attachment of a single ubiquitin molecule at specific lysines of histone tails, has been associated with transcr...

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Genes - ISSN 2073-4425