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Agronomy, Volume 14, Issue 11 (November 2024) – 298 articles

Cover Story (view full-size image): Turfgrass quality measurements are collected in the field and are based on several criteria such as color, density and cover. These measurements are taken by visual raters using a gradient from 1 (low) to 9 (high), but are oftentimes subjective, and they can vary with each rater, the point of observation, time of the day, and other factors. We developed a protocol to utilize imagery from multispectral sensors on-board unmanned aerial vehicles (also known as "drones") to build predictive models of turfgrass quality that are less subject to the drift observed in visual ratings and that include seasonal variability across two years of data collection. We envision that our models can initiate the development of a digital library of predictive models of turfgrass quality that can be used in other landscapes with different ecological characteristics. View this paper
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14 pages, 479 KiB  
Article
Polygenic Genetic Analysis of Principal Genes for Yield Traits in Land Cotton
by Xiaoman Ma, Weifeng Guo, Liangrong He and Xinchuan Cao
Agronomy 2024, 14(11), 2749; https://doi.org/10.3390/agronomy14112749 - 20 Nov 2024
Viewed by 382
Abstract
Objective: Yield traits are crucial for cotton breeding. Analyzing the yield traits of terrestrial cotton and exploring their genetic mechanisms through a primary gene + multigene hybrid genetic model provide a theoretical basis for selecting high-quality cotton varieties and identifying associated molecular markers. [...] Read more.
Objective: Yield traits are crucial for cotton breeding. Analyzing the yield traits of terrestrial cotton and exploring their genetic mechanisms through a primary gene + multigene hybrid genetic model provide a theoretical basis for selecting high-quality cotton varieties and identifying associated molecular markers. Methods: Completing the construction of the six populations (P1, P2, F1, F2, B1, B2) using Xinluzhong 37 as the female parent and Xinluzhong 51 as the male parent. Six yield traits were assessed: single boll weight, boll number per plant, lint yield per plant, seed cotton per plant, lint percentage, and seed index. Data were tested for normal distribution, and the inheritance patterns of yield traits were analyzed through combined primary gene + polygenic analysis. Results: The coefficients of variation for the six yield traits ranged from 37.368% to 53.905%, 33.335% to 58.524%, 34.132% to 57.686%, 8.721% to 12.808%, 1.842% to 6.283%, and 8.783% to 12.580%, respectively. These traits displayed either normal or skewed normal distributions. The optimal genetic model for single boll weight and seed index was PG-ADI, while MX2-ADI-AD best fit the traits of boll number per plant and lint percentage. For lint yield per plant and seed cotton per plant, the 2MG-ADI model was optimal. The polygenic heritability for single boll weight was 29.58%; for boll number per plant, main gene heritability was 25.19%, with 0% heritability for polygenes; for lint yield per plant, the heritability of the main gene was 23.47%. For seed cotton per plant, the heritability of main genes was 15.38%, with lint percentage showing 63.25% heritability for main genes and 0.08% for polygenes, and seed index with 45.93% heritability due to polygenes. Overall, single boll weight and seed index were predominantly polygenic, while boll number per plant and lint percentage were largely controlled by main gene inheritance. The inheritance of lint yield per plant and seed cotton per plant was also primarily governed by main genes. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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14 pages, 3940 KiB  
Article
The Transcriptome of Dahlia pinnata Provides Comprehensive Insight into the Formation Mechanism of Polychromatic Petals
by Jiuchun Zou, Liping Ran, Rui Zhou and Zhongwei Wang
Agronomy 2024, 14(11), 2748; https://doi.org/10.3390/agronomy14112748 - 20 Nov 2024
Viewed by 410
Abstract
Garden dahlias (Dahlia pinnata) are popular for their wide range of color variations, with polychromatic cultivars enhancing their ornamental value. Previous studies on the anthocyanin biosynthetic pathway (ABP) have indicated that the post-transcriptional suppression of the chalcone synthase gene (CHS [...] Read more.
Garden dahlias (Dahlia pinnata) are popular for their wide range of color variations, with polychromatic cultivars enhancing their ornamental value. Previous studies on the anthocyanin biosynthetic pathway (ABP) have indicated that the post-transcriptional suppression of the chalcone synthase gene (CHS) is involved in the formation of the white petals of dahlias. To further explore the complex mechanisms underlying polychromatic petal formation, we selected the bicolor cultivar ‘LiRen’ to identify candidate genetic factors. Through the detection of proanthocyanidin and anthocyanin, it was indicated that the white tips of the petals lacked anthocyanin but accumulated some proanthocyanidin, albeit at significantly lower levels than those at the red bases of the petals. This suggests that the upstream ABP, which involves CHS, is not entirely inactive. Transcription sequencing and quantitative reverse transcription PCR (qRT-PCR) analysis demonstrated that the inactive ABP in the white tips results from the downregulation of ABP structural genes. The low abundance of DpMYB1 appears to be the key factor influencing the lack of strong transcription activation of the structural genes. Additionally, highly upregulated DpSPL9 targeted by the downregulated miR156 in the white tips was identified through qRT-PCR. This suggests that DpSPL9 may act as an anthocyanin depressor to destabilize the MYB-bHLH-WDR complex through interaction with DpMYB1. The findings indicate that the DpMYB1 and miR156-DpSPL9 modules play potential regulatory roles in the formation of bicolor petals. Overall, these results provide new insights into the color patterning of dahlias and will be valuable for further studies regarding the mechanisms underlying polychromatic petal formation. Full article
(This article belongs to the Section Horticultural and Floricultural Crops)
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34 pages, 6063 KiB  
Article
Exploring the Genome of the Endophytic Fungus Botrytis deweyae: Prediction of Novel Secondary Metabolites Gene Clusters: Terpenes and Polyketides
by Victor Coca-Ruiz, Josefina Aleu, Carlos Garrido and Isidro G. Collado
Agronomy 2024, 14(11), 2747; https://doi.org/10.3390/agronomy14112747 - 20 Nov 2024
Viewed by 379
Abstract
Fungi have played a pivotal role in human history, from the dangers of fungal toxins to the revolutionary discovery of penicillin. Fungal secondary metabolites (SMs), such as polyketides (PKs) and terpenes, have attracted considerable interest due to their diverse biological activities. Botrytis deweyae [...] Read more.
Fungi have played a pivotal role in human history, from the dangers of fungal toxins to the revolutionary discovery of penicillin. Fungal secondary metabolites (SMs), such as polyketides (PKs) and terpenes, have attracted considerable interest due to their diverse biological activities. Botrytis deweyae, an endophytic fungus, exhibits behaviors that are notably distinct from those of its necrotrophic relatives within the genus Botrytis. This study explores the importance of terpenes and PK gene clusters and their conservation between species. In addition, new putative biosynthetic gene clusters corresponding to those families were identified. Consequently, the new PKS BdPKS22-26 were also identified in other Botrytis species and other fungi. In addition, those new gene clusters identified in this work show differences in the degree of conservation and are phylogenetically closely related to some of the 21 PKSs previously described in the reference strain Botrytis cinerea B05.10. Moreover, a new gene cluster related to terpenes in B. deweyae B1 and B. cinerea B05.10 was also identified that had never been detected before. This new gene cluster is well conserved among other Botrytis species in many phylogenetically distant fungal lineages. Understanding the genetic basis and conservation of these putative biosynthetic gene clusters sheds light on the metabolic potential and ecological roles of B. deweyae and related fungal species. Full article
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17 pages, 755 KiB  
Article
Genome-Wide Association Study of Seed Quality and Yield Traits in a Soybean Collection from Southeast Kazakhstan
by Botakoz Doszhanova, Alibek Zatybekov, Svetlana Didorenko, Chao Fang, Saule Abugalieva and Yerlan Turuspekov
Agronomy 2024, 14(11), 2746; https://doi.org/10.3390/agronomy14112746 - 20 Nov 2024
Viewed by 388
Abstract
Soybean (Glycine max (L.) Merr.) is a vital agricultural crop and a key source of protein and oil for food and feed production. The search for new genetic factors affecting the main agronomic traits of soybean is a significant step for efficient [...] Read more.
Soybean (Glycine max (L.) Merr.) is a vital agricultural crop and a key source of protein and oil for food and feed production. The search for new genetic factors affecting the main agronomic traits of soybean is a significant step for efficient breeding strategies. This study aimed to identify marker–trait associations (MTAs) for seed protein and oil content and yield by conducting a genome-wide association study (GWAS). The collection of 252 soybean accessions of five different origins was analyzed over a period of five years. The GWAS was conducted using 44,385 SNP markers extracted from whole-genome resequencing data using Illumina HiSeq X Ten. The multiple-locus mixed linear model (MLMM) facilitated the identification of 38 stable MTAs: nine for protein content, nine for oil content, seven for the number of fertile nodes, six for the number of seeds per plant, four for thousand seeds weight, and three for yield per plant. Fifteen of these MTAs are presumed to be novel, with one linked to seed protein content, three linked to seed oil content, and the remaining MTAs linked to yield-related traits. These findings offer valuable insights for soybean breeding programs aimed at developing new, competitive cultivars with improved seed quality and yield characteristics. Full article
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35 pages, 1942 KiB  
Review
A Comprehensive Review of Low- and Zero-Residue Pesticide Methods in Vegetable Production
by Tahseen Chikte, Tomas Kopta, Václav Psota, Javier Arizmendi and Mirosława Chwil
Agronomy 2024, 14(11), 2745; https://doi.org/10.3390/agronomy14112745 - 20 Nov 2024
Viewed by 668
Abstract
Increasing demand for sustainable vegetable production is leading to low- and zero-pesticide farming practices. This review examines many strategies intended to lower pesticide use without impacting crop quality and production. The use of biopesticides, biological control, integrated pest management (IPM), and organic farming [...] Read more.
Increasing demand for sustainable vegetable production is leading to low- and zero-pesticide farming practices. This review examines many strategies intended to lower pesticide use without impacting crop quality and production. The use of biopesticides, biological control, integrated pest management (IPM), and organic farming are some of the important techniques that are examined. This investigation also covers cutting-edge technology that improves the efficacy and efficiency of various techniques, such as robots, artificial intelligence (AI), and precision agriculture. A rigorous evaluation of the effects of pesticide residues on the environment and human health emphasises how crucial it is to use fewer pesticides. Market trends and customer preferences are considered, as well as the social and economic effects of implementing these strategies. The paper’s conclusion identifies obstacles to the general adoption of low- and zero-pesticide approaches and makes recommendations for future research topics to overcome these obstacles. Full article
(This article belongs to the Section Agroecology Innovation: Achieving System Resilience)
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17 pages, 5293 KiB  
Article
Spatial Variation and Stock Estimation of Soil Organic Carbon in Cropland in the Black Soil Region of Northeast China
by Wenwen Li, Zhen Yang, Jie Jiang and Guoxin Sun
Agronomy 2024, 14(11), 2744; https://doi.org/10.3390/agronomy14112744 - 20 Nov 2024
Viewed by 326
Abstract
Soil organic carbon (SOC) sequestration in cropland is not only instrumental in combating climate change, but it also significantly enhances soil fertility. It is imperative to precisely and accurately quantify the SOC sequestration potential and assess the relative significance of various multiple explanatory [...] Read more.
Soil organic carbon (SOC) sequestration in cropland is not only instrumental in combating climate change, but it also significantly enhances soil fertility. It is imperative to precisely and accurately quantify the SOC sequestration potential and assess the relative significance of various multiple explanatory factors in a timely manner. We studied 555 soil samples from the cropland topsoil (0–15 cm) across the black soil region in Northeast China between the years 2021 and 2022, and we identified 16 significant impact factors using one-way ANOVA and Pearson correlation coefficient analysis. In addition, the Random Forest (RF) model outperformed the Cubist model in predicting the spatial distribution of SOC contents. The predicted ranges of SOC contents span from 5.24 to 43.93 g/kg, with the average SOC content using the RF model standing at 17.24 g/kg in Northeast China. Stepwise regression and structural equation modeling revealed climate and topography as key factors affecting SOC distribution. The SOC density in the study area varied from 0.51 to 9.11 kg/m2, averaging 3.30 kg/m2, with a total SOC stock of 1226.64 Tg. The SOC sequestration potential in the study area was estimated at 3057.65 Tg by the categorical maximum method, with a remaining sequestration capacity of 1831.01 Tg. The study area has great potential for SOC sequestration. We hope to transform the theoretical value of SOC sequestration potential into actual SOC sequestration capacity by promoting sustainable agriculture and additional strategies. Our findings provide insights into the global soil conditions, SOC storage capacities, and effective SOC management strategies. Full article
(This article belongs to the Section Soil and Plant Nutrition)
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12 pages, 1545 KiB  
Article
Cultivation Practices Affect Biomass Yield and Quality of “Felina 32”, an Industrial Hemp Variety
by Kyriakos D. Giannoulis, Dimitrios Bartzialis, Ippolitos Gintsioudis and Nicholaos G. Danalatos
Agronomy 2024, 14(11), 2743; https://doi.org/10.3390/agronomy14112743 - 20 Nov 2024
Viewed by 484
Abstract
Hemp is a multipurpose crop that produces high amounts of lignocellulosic biomass. There are few studies dealing with hemp’s biomass production (lignocellulosic and fiber) under cropping strategies such as irrigation and nitrogen fertilizer. Therefore, the aim of the current study was to assess [...] Read more.
Hemp is a multipurpose crop that produces high amounts of lignocellulosic biomass. There are few studies dealing with hemp’s biomass production (lignocellulosic and fiber) under cropping strategies such as irrigation and nitrogen fertilizer. Therefore, the aim of the current study was to assess the effect of irrigation and N-fertilization on the lignocellulosic biomass of one of the most well-known industrial hemp (Cannabis sativa L.) varieties worldwide (Felina 32) under a typical Mediterranean climate. For the purposes of this study, a field experiment was conducted in central Greece (Thessaly region) over the cultivating years 2022 and 2023. We determined the produced biomass dry yield and the dry biomass yield vs. N-uptake relation, as well as quality characteristics for hemp (cv. Felina 32) under three irrigation (I1: 33%, I2: 66%, and I3: 100% ETo) and three N-fertilization levels (N1: 0, N2: 70, and N3: 140 kg ha−1). A significant difference in the dry biomass yield was found, ranging between 10–11.2 t ha−1 using I2 and/or I3 irrigation levels and remaining at 8.6 t ha−1 with lower irrigation (I1). In terms of fertilization factor, it appeared that in samplings where statistically significant changes were observed, all degrees of fertilization differed from one another, with the N3 treatment exhibiting the highest production (11.4 t ha−1). The average protein content varied between 10% in 2023 and 14% in 2023. A linear biomass yield–nutrient uptake relationship was found with high R2, pointing to a nitrogen use efficiency of 55.15 kg kg−1. Thus, it would seem that nitrogen fertilization and irrigation are both crucial factors of industrial hemp cultivation, helping to raise the crop’s overall yield of lignocellulosic biomass. The introduction of hemp into land-use systems necessitates thorough evaluation, as hemp shows considerable potential as a crop that can yield substantial quantities of above-ground biomass (lignocellulosic: stems and fibers). This is especially true in regions where irrigation is possible, and the application of nitrogen fertilizers can further enhance these yields. Full article
(This article belongs to the Special Issue Plant Biomass Production and Utilization)
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18 pages, 2071 KiB  
Article
Logistic and Structural Equation Fitting Analyses of the Effect of Slow-Release Nitrogen Fertilizer Application Rates on the Nitrogen Accumulation and Yield Formation Mechanism in Maize
by Jingjing Shi, Tiantian Meng, Xuanyi Chen, Xiangqian Zhang, Meiren Rong, Huiqing Lan, Guolong Ge, Dejian Zhang, Xiaoqing Zhao, Yonghe Hao and Zhanyuan Lu
Agronomy 2024, 14(11), 2742; https://doi.org/10.3390/agronomy14112742 - 20 Nov 2024
Viewed by 356
Abstract
The purpose of this study is to clarify the differential effects of the application rate of slow-release nitrogen fertilizer (SRFN) on the nitrogen (N) accumulation dynamics, nutrient organ N distribution and transportation, yield, and N utilization efficiency of maize harvested using [...] Read more.
The purpose of this study is to clarify the differential effects of the application rate of slow-release nitrogen fertilizer (SRFN) on the nitrogen (N) accumulation dynamics, nutrient organ N distribution and transportation, yield, and N utilization efficiency of maize harvested using grain-type machines. This has significant implications for the scientific application of SRFN, as well as for reducing its application rate and improving its efficiency, in the agro-pastoral transitional zone of northern China. In a long-term positioning experiment that began in 2018, five treatments consisting of different SRFN application rates were set up, namely, N120 (120 kg ha−1), N180 (180 kg ha−1), N240 (240 kg ha−1), N300 (300 kg ha−1), and N360 (360 kg ha−1), with no fertilization during the growth period used as control (CK) treatment. To explore the characteristics of nitrogen accumulation dynamics in maize populations and the main factors affecting maize yield formation under the different SRFN application rate treatments, this study adopted a combination of quantitative analyses and model fitting, including logistic models, principal component analysis, and structural equation modeling. The research results show that SRFN application increased the aboveground N accumulation of the maize population, and the fitting effect of the logistic models was significant. The maximum rate of N accumulation in both years showed a trend of first increasing and then decreasing with the increase in the SRFN application rate. Compared with CK, SRFN application reduced the proportion of N distribution in the nutrient organs during the R6 stage, and it increased the N transport from the nutrient organs to the grains after the VT-R1 stage. With the increase in the SRFN application rate, both the economic yield and biological yield showed a single peak curve change and were maximized in the N240 treatment. The economic yield reached 15,342.07 kg ha−1 in 2020 and 16,323.51 kg ha−1 in 2021, increasing by 36.2% and 61.7% compared with CK, respectively. The apparent N fertilizer recovery rate, N uptake efficiency, N agronomic efficiency, and N fertilizer partial productivity all gradually decreased with the increase in the SRFN application rate. In maize populations, an appropriate SRFN application rate can adjust the characteristic parameters during the aboveground N accumulation rapid growth period, increase the N accumulation amount in aboveground parts, promote the transport of N from nutrient organs to grains, and improve yield. An application of 180–240 kg ha−1 SRFN is recommended for maize cultivation in the agro-pastoral transitional zone of northern China, as it is beneficial for stabilizing and increasing maize yield, as well as reducing the rate and improving the efficiency of N fertilizer. Full article
(This article belongs to the Section Soil and Plant Nutrition)
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13 pages, 1408 KiB  
Article
Characterization of Citrus Rootstock Under Conditions of Boron Toxicity
by María Teresa Navarro-Gochicoa, Lidia Aparicio-Durán, Alba Delfín, Carlos J. Ceacero, María Begoña Herrera-Rodríguez, Francisco J. Arenas-Arenas, Juan J. Camacho-Cristóbal, Agustín González-Fontes and Jesús Rexach
Agronomy 2024, 14(11), 2741; https://doi.org/10.3390/agronomy14112741 - 20 Nov 2024
Viewed by 403
Abstract
Boron (B) is an essential element for an adequate development of citrus orchards. However, citrus trees are vulnerable to high B concentrations, generating morphological and physiological alterations incompatible with the proper production of citrus. In this sense, citrus rootstocks can provide valuable capabilities [...] Read more.
Boron (B) is an essential element for an adequate development of citrus orchards. However, citrus trees are vulnerable to high B concentrations, generating morphological and physiological alterations incompatible with the proper production of citrus. In this sense, citrus rootstocks can provide valuable capabilities to citrus trees including tolerance to different stresses. The objective of this work is the characterization of 2247 × 6070–02–2 citrus rootstock using as a reference Carrizo citrange rootstock under B toxicity conditions (2.5 mM boric acid). Carrizo citrange is a diploid hybrid, and 2247 × 6070–02–2 is a novel low-HLB-sensitive tetraploid. B excess effects were analyzed after four weeks of treatment using 0.05 (control) and 2.5 mM (toxicity) H3BO3 concentrations, respectively, in hydroponic growth conditions. The characterization of 2247 × 6070–02–2 rootstock compared to Carrizo citrange was performed by measuring physiological parameters in leaves related to photosynthesis, stress oxidative responses, B content, and gene expression. The lower transpiration rate and, especially, the higher expression of the CsXIP1;1 gene and the better antioxidant defense mechanisms shown by 2247 × 6070–02–2 make this rootstock more tolerant to high B content than Carrizo citrange. Full article
(This article belongs to the Section Horticultural and Floricultural Crops)
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11 pages, 1506 KiB  
Article
Abundance of Human Pathogenic Microorganisms in the Halophyte Salicornia europaea L.: Influence of the Chemical Composition of Shoots and Soils
by Matteo Marangi, Sonia Szymanska, Kai-Uwe Eckhardt, Felix Beske, Gerald Jandl, Katarzyna Hrynkiewicz, Julien Pétillon, Christel Baum and Peter Leinweber
Agronomy 2024, 14(11), 2740; https://doi.org/10.3390/agronomy14112740 - 20 Nov 2024
Viewed by 746
Abstract
Salicornia europaea L. is a halophilic plant species belonging to Chenopodiaceae, whose shoots are used as a vegetable. Since the shoots can be eaten raw, the objective of the present study was to investigate possible controls on the abundance of human pathogenic microorganisms [...] Read more.
Salicornia europaea L. is a halophilic plant species belonging to Chenopodiaceae, whose shoots are used as a vegetable. Since the shoots can be eaten raw, the objective of the present study was to investigate possible controls on the abundance of human pathogenic microorganisms (HPMOs) in the shoots as a health risk. For this reason, the molecular-chemical composition of shoots, site-specific soil organic matter (bulk and rhizosphere), and soil pH and salinity were analyzed. Plant and soil samples were taken from two test sites with differing salinity levels in France (a young and an old marsh). We hypothesized that the chemical traits of plants and soils could suppress or promote HPMOs and, thus, serve as risk indicators for food quality. The chemical traits of shoots and bulk and rhizosphere soil were measured through thermochemolysis using gas chromatography/mass spectrometry (GC/MS). The densities of cultivable HPMOs (Salmonella enterica, Escherichia coli, and Listeria monocytogenes) were determined in plant shoots, rhizosphere soil, and bulk soil using selective media. Negative correlations between lignin content in the shoots and the abundance of S. enterica, as well as between lignin content in bulk soil and the abundance of E. coli, are explained by the lignin-based rigidity and its protective effect on the cell wall. In the shoot samples, the content of lipids was positively correlated with the abundance of E. coli. The abundance of E. coli, S. enterica, and L. monocytogenes in bulk soil decreased with increasing soil pH, which is linked to increased salinity. Therefore, soil salinity is proposed as a tool to decrease HPMO contamination in S. europaea and ensure its food safety. Full article
(This article belongs to the Topic Plant-Soil Interactions, 2nd Volume)
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17 pages, 3074 KiB  
Article
Railway Infrastructure as a Substitute Habitat for Valuable Medicinal Plant Species Using the Example of Bearberry Arctostaphylos uva-ursi
by Barbara Bacler-Żbikowska, Agnieszka Hutniczak, Wojciech Bierza, Jawdat Bakr, Agnieszka Błońska, Anna Piekarska-Stachowiak, Paweł Olszewski, Anna Pieprzyca, Piotr Kucharski, Adam Stebel and Gabriela Woźniak
Agronomy 2024, 14(11), 2739; https://doi.org/10.3390/agronomy14112739 - 20 Nov 2024
Viewed by 366
Abstract
The secondary, substitute habitats are becoming more important for the survival of many valuable plant species, including medicinal plants—for example, bearberry Arctostaphylos uva-ursi. The aim of the conducted research is to compare the ability of A. uva-ursi to accumulate heavy metals in [...] Read more.
The secondary, substitute habitats are becoming more important for the survival of many valuable plant species, including medicinal plants—for example, bearberry Arctostaphylos uva-ursi. The aim of the conducted research is to compare the ability of A. uva-ursi to accumulate heavy metals in leaves from railways (anthropogenic substitute habitat) and the natural habitats (pine forests). We measured the concentration of five heavy metals (Cd, Hg, Ni, Pb, and Zn) in plant material and in the soil. The bioaccumulation factor was also calculated. Moreover, we measured biotic factors including A. uva-ursi height and abundance, along with the plant diversity indices, in the investigated plots. The presented results reveal that (1) none of the parameters concerning the content of the selected heavy metals described in the currently applicable legal acts were exceeded, (2) A. uva-ursi does not show the potential for heavy metal accumulation, except for zinc and partially mercury, (3) its individuals in the natural habitats are lower, (4) the abundance (percentage cover) of A. uva-ursi is the lowest in the natural habitat, and (5) the value of the Shannon–Wiener diversity index is the highest in the vegetation patches with A. uva-ursi developed in natural habitats. Full article
(This article belongs to the Section Agroecology Innovation: Achieving System Resilience)
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17 pages, 9299 KiB  
Article
Preharvest Gibberellic Acid Treatment Increases Both Modulus of Elasticity and Resistance in Sweet Cherry Fruit (cv. ‘Bing’ and ‘Lapins’) at Harvest and Postharvest During Storage at 0 °C
by Alberto Carrión-Antolí, Juan Pablo Zoffoli, María Serrano, Daniel Valero and Paulina Naranjo
Agronomy 2024, 14(11), 2738; https://doi.org/10.3390/agronomy14112738 - 20 Nov 2024
Viewed by 600
Abstract
Fruit firmness in sweet cherries (Prunus avium L.) is a critical quality parameter highly valued by consumers as it is associated with fruit freshness. In general, firm fruit also cope better with storage and handling. Gibberellic acid (GA) is commonly used by [...] Read more.
Fruit firmness in sweet cherries (Prunus avium L.) is a critical quality parameter highly valued by consumers as it is associated with fruit freshness. In general, firm fruit also cope better with storage and handling. Gibberellic acid (GA) is commonly used by sweet cherry producers to increase firmness, soluble solids content and fruit size. This study evaluated the effects of GA on the rheological properties of sweet cherry fruit at harvest and postharvest storage. Specifically, GA’s influence on susceptibility to mechanical damage during handling was evaluated. The following GA treatments were applied to two sweet cherry cultivars ‘Bing’ and ‘Lapins’: T0, control, T30—GA at 15 ppm applied at pit-hardening and straw-colour stages; T45—GA at 25 ppm at pit-hardening and GA at 20 ppm at straw-colour; and T60—GA at 30 ppm applied at pit-hardening and straw-colour. The results indicate that GA delayed harvest by two to four days in both cultivars, with ‘Lapins’ also showing a significant increase in fruit size. Regardless of spray concentration, GA increased the modulus of elasticity and fruit resistance evaluated as stress at the maximum point at harvest. These effects persisted after 35 days of storage at 0 °C and an additional three days of shelf-life at 15 °C. While the strain or deformation capacity of the fruit at bioyield at harvest was constant across treatments, it was, however, lower in the GA-treated fruit than in the controls during storage at 0 °C under the high-humidity conditions of modified atmosphere packaging. The less mature fruit harvested at colour 3.0 (red/mahogany) were stiffer (reduced deformation) and more sensitive to induced mechanical injury than the fruit harvested later at colour 3.5 (mahogany). The GA treatments increased fruit resistance to damage without increasing tissue deformability. Other questions associated with stiffer tissues and lower deformability during storage at 0 °C under high humidity should be further studied, specifically cultivars that are naturally high in box-cracking sensitivity during storage. Full article
(This article belongs to the Section Horticultural and Floricultural Crops)
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16 pages, 4046 KiB  
Article
Effects of Continuous Return of Bt Corn Straw on Soil Nutrients, Enzyme Activities, and Microbial Communities
by Chenning Zhang, Xiao Lv, Xiaomin Liang, Peng Peng and Yuanjiao Feng
Agronomy 2024, 14(11), 2737; https://doi.org/10.3390/agronomy14112737 - 20 Nov 2024
Viewed by 395
Abstract
The impact of Bacillus thuringiensis (Bt) corn straw returning on the soil ecosystem has attracted significant attention. In this study, taking the homologous conventional corn 5422 as a control, we explored the effects of Bt corn (5422Bt1 and 5422CBCL) straw return after five [...] Read more.
The impact of Bacillus thuringiensis (Bt) corn straw returning on the soil ecosystem has attracted significant attention. In this study, taking the homologous conventional corn 5422 as a control, we explored the effects of Bt corn (5422Bt1 and 5422CBCL) straw return after five consecutive cycles on soil nutrients, enzyme activities, and microbial communities. The results showed that in the 5422Bt1 treatment, the levels of available phosphorus (AP), total nitrogen (TN), and sucrose enzyme (SUC) activities significantly increased. In the 5422CBCL treatment, organic matter (OM), alkaline nitrogen (AN), and AP contents, as well as SUC and acid phosphatase (ACP) activities, significantly decreased, while available potassium (AK) and TN contents significantly increased. Through Illumina high-throughput sequencing, it was found that the OTU abundance of soil fungi and bacteria changed after straw returning, and there were no significant differences in alpha diversity (α-diversity) among the three treatments. Redundancy analysis (RDA) indicated that soil nutrients and enzyme activities also affect the soil microbial communities. In summary, Bt corn straw returning affects soil nutrients, enzyme activities, and the structure of microbial communities. Overall, this study revealed the impact of continuous Bt corn straw returning on the soil ecosystem, providing a theoretical basis for subsequent studies. Full article
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16 pages, 4559 KiB  
Article
Relay Intercropping of Soybean and Winter Barley in Polish Climatic Conditions—Importance of Strip Width and Yearly Weather
by Stanisław Świtek, Wiktor Majchrzycki, Aleksander Taras and Tomasz Piechota
Agronomy 2024, 14(11), 2736; https://doi.org/10.3390/agronomy14112736 - 20 Nov 2024
Viewed by 450
Abstract
Climate change and the increasing demand for food necessitate innovative agricultural methods. Relay intercropping, where one crop is sown into another already-grown crop, offers a promising alternative to traditional systems. In the 2021/22 and 2022/23 seasons, a field experiment was conducted to assess [...] Read more.
Climate change and the increasing demand for food necessitate innovative agricultural methods. Relay intercropping, where one crop is sown into another already-grown crop, offers a promising alternative to traditional systems. In the 2021/22 and 2022/23 seasons, a field experiment was conducted to assess the relay intercropping of winter barley (Hordeum vulgare L. ssp. polistichon) with soybean (Glycine max (L.) Merr). This experiment took place at the Brody Experimental and Educational Station of the University of Life Sciences in Poznań, Poland. Soybean was sown into designated strips within the barley field, and both crops were cultivated simultaneously until the barley was harvested. After the barley harvest, the soybean plants continued to grow and were harvested at full maturity. The results varied between the two years of this experiment. In the first year, characterized by drought conditions, the soybean yield was completely lost, while the barley maintained a stable yield. In the second year, with more favorable weather, the yields of barley and soybean were interdependent. The use of the relay intercropping system did not increase the Land Equivalent Ratio (LER) above 1. Additionally, total protein yield remained consistent across different cultivation systems. Relay intercropping can serve as a method for protecting crop protein yields under adverse weather conditions and may offer a viable alternative for soybean cultivation in challenging climates. Full article
(This article belongs to the Section Innovative Cropping Systems)
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28 pages, 7794 KiB  
Article
Genome-Wide Identification of the PAP Gene Family in Potatoes and Its Expression Response to Phosphorus-Solubilizing Bacteria, Freezing Stresses, and Phytohormonal Regulation
by Chengchen Li, Jitao Liu, Yongshan Liao, Huanming Luo, Li Wang, Jianwei Shan, Haicui Suo, Kang An, Kun Yang and Xiaobo Li
Agronomy 2024, 14(11), 2735; https://doi.org/10.3390/agronomy14112735 - 20 Nov 2024
Viewed by 405
Abstract
Purple acid phosphatases (PAPs) are multifunctional proteins implicated in various aspects of plant biology, including flowering, seed development, senescence, carbon metabolism, and the response to biotic and abiotic stresses. Although PAPs have been reported in potatoes, the gene features and expression under phosphorus-solubilizing [...] Read more.
Purple acid phosphatases (PAPs) are multifunctional proteins implicated in various aspects of plant biology, including flowering, seed development, senescence, carbon metabolism, and the response to biotic and abiotic stresses. Although PAPs have been reported in potatoes, the gene features and expression under phosphorus-solubilizing bacteria and freezing stresses remain unclear. In the present study, we identified 29 StPAPs with molecular weights ranging from 27.96 to 85.40 kDa, which were classified into three distinct groups based on a phylogenetic analysis. Integrating gene chromosomal localization, gene duplication events, intergenic collinearity, and gene selection pressure analysis, we found that the expansion of the potato PAP gene family was primarily driven by genome-wide duplication events, with the majority of the PAP genes undergoing purifying selection. Promoter cis-acting element analysis and RNA-Seq data revealed that a total of 89 cis-acting elements were associated with plant hormones, and the seven StPAP genes for low phosphorous response were associated with responses to abscisic acid, gibberellin, and abiotic stresses. Tissue expression pattern analyses indicated that the expression of StPAP genes were regulated in response to varying phosphorus levels. A co-expression network analysis identified eight StPAP genes involved in symbiosis with phosphorus-solubilizing bacteria, and seven StPAP genes exhibited significantly higher expression in response to freezing stress and abiotic stresses (drought, heat, darkness, and N/K/Ca/Fe/Mg/Zn deficiencies). In conclusion, the StPAP may synergistically modulate phytohormone levels in response to stress by regulating plant phosphorus homeostasis; StPAP12 and abscisic acid are key phosphorus-regulated genes and phytohormones in response to freezing stress. This study represents the first report to demonstrating the responsiveness of StPAPs to phytohormones, revealing a potential new function for these genes in plant stress responses and nutrient management. These findings provide novel insights into the multifaceted roles of PAPs in plant adaptation and stress tolerance. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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27 pages, 10500 KiB  
Article
YOLOv8-GDCI: Research on the Phytophthora Blight Detection Method of Different Parts of Chili Based on Improved YOLOv8 Model
by Yulong Duan, Weiyu Han, Peng Guo and Xinhua Wei
Agronomy 2024, 14(11), 2734; https://doi.org/10.3390/agronomy14112734 - 20 Nov 2024
Viewed by 404
Abstract
Smart farms are crucial in modern agriculture, but current object detection algorithms cannot detect chili Phytophthora blight accurately. To solve this, we introduced the YOLOv8-GDCI model, which can detect the disease on leaves, fruits, and stem bifurcations. The model uses RepGFPN for feature [...] Read more.
Smart farms are crucial in modern agriculture, but current object detection algorithms cannot detect chili Phytophthora blight accurately. To solve this, we introduced the YOLOv8-GDCI model, which can detect the disease on leaves, fruits, and stem bifurcations. The model uses RepGFPN for feature fusion, Dysample upsampling for accuracy, CA attention for feature capture, and Inner-MPDIoU loss for small object detection. In addition, we also created a dataset of chili Phytophthora blight on leaves, fruits, and stem bifurcations, and conducted comparative experiments. The results manifest that the YOLOv8-GDCI model demonstrates outstanding performance across a gamut of comprehensive indicators. In comparison with the YOLOv8n model, the YOLOv8-GDCI model demonstrates an improvement of 0.9% in precision, an increase of 1.8% in recall, and a remarkable enhancement of 1.7% in average precision. Although the FPS decreases slightly, it still exceeds the industry standard for real-time object detection (FPS > 60), thus meeting the requirements for real-time detection. Full article
(This article belongs to the Section Precision and Digital Agriculture)
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13 pages, 769 KiB  
Article
Genetic Dissection of Isoleucine and Leucine Contents in the Embryo and Maternal Plant of Rapeseed Meal Under Different Environments
by Jianfeng Xu, Haiming Xu, Chunhai Shi, Yunxiang Zang, Zhiyu Zhu and Jianguo Wu
Agronomy 2024, 14(11), 2733; https://doi.org/10.3390/agronomy14112733 - 20 Nov 2024
Viewed by 506
Abstract
The genetic basis controlling the content of two essential amino acids (isoleucine and leucine) in rapeseed meal was investigated through a replicated trial of the two BC1F1 populations from a two-way backcross between 202 TN DH population strains and their [...] Read more.
The genetic basis controlling the content of two essential amino acids (isoleucine and leucine) in rapeseed meal was investigated through a replicated trial of the two BC1F1 populations from a two-way backcross between 202 TN DH population strains and their parents (‘Tapidor’ and ‘Ningyou7′). Given the impact of rapeseed embryos and maternal plants on seed qualities, a multi-genetic-system QTL mapping method was employed, incorporating both genetic main effects and environmental interaction effects. The results demonstrated the presence of nine QTLs associated with isoleucine and leucine content in the A1, A4, A5, A7, A9, and C2 linkage groups. These included six QTLs controlling isoleucine content and three QTLs controlling leucine content, which collectively explained 55.49% and 56.06% of the phenotypic variation, respectively. Of these, four QTLs were identified as the main QTL, which collectively explained over 10% of the phenotypic variation. All of the identified QTLs exhibited a highly significant additive and dominant effects on seed embryos. Additionally, one of the QTLs demonstrated had a particularly significant additive effect derived from the maternal genome. QTLs controlling isoleucine and leucine were identified in the A1, A4, and C2 linkage groups. Moreover, two QTL clusters influencing these essential amino acid contents were identified in the A4 and C2 linkage groups, situated between molecular markers HS-K02-2 and HBR094 and between EM18ME6-220 and NA12C03, respectively. Full article
(This article belongs to the Special Issue Genetics and Breeding of Field Crops in the 21st Century)
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22 pages, 11039 KiB  
Article
Investigation of Nitrogen Fixation Efficiency in Diverse Alfalfa Varieties Utilizing Sinorhizobium meliloti LL2
by Yilin Han, Wenjuan Kang, Shangli Shi, Jian Guan, Yuanyuan Du, Fuqiang He, Baofu Lu and Ming Wang
Agronomy 2024, 14(11), 2732; https://doi.org/10.3390/agronomy14112732 - 19 Nov 2024
Viewed by 372
Abstract
To investigate the precise and efficient symbiosis between Sinorhizobium meliloti LL2 and different alfalfa varieties, we conducted experiments using eight alfalfa varieties along with the S. meliloti LL2. Our objective was to identify highly effective symbiotic combinations by analyzing differences in nodulation, nitrogen [...] Read more.
To investigate the precise and efficient symbiosis between Sinorhizobium meliloti LL2 and different alfalfa varieties, we conducted experiments using eight alfalfa varieties along with the S. meliloti LL2. Our objective was to identify highly effective symbiotic combinations by analyzing differences in nodulation, nitrogen fixation, and biomass accumulation. The results revealed that Gannong NO.9 had higher values for single effective root nodule weight (1.30 mg) and the number of infected cells in root nodules (2795) compared to other varieties (p < 0.05). Additionally, Gannong NO.9 exhibited the highest nitrogenase activity (0.91 μmol·g−1·h−1), nitrogen fixation percentage (67.16%), and amount of nitrogen fixation (18.80 mg/pot). Moreover, there was a significant 26.50% increase in aboveground tissue nitrogen accumulation compared to the control check (CK) (p < 0.05). Furthermore, underground tissue showed excellent values for nitrogen accumulation (35.68 mg/plant) and crude protein content (17.75%) when compared with other treatments. The growth of plants was demonstrated by the combined impact of nodulation and nitrogen fixation. The distribution of biomass after nitrogen fixation was compared to the control group (p < 0.05) to investigate accumulation. The eight combinations of symbiotic nitrogen fixation (SNF) were classified into six distinct types based on their significantly different biomass growth rates compared to CK. ① Aboveground accumulation type: Gannong NO.9 (there was a 24.31% increase in aboveground dry weight); ② aboveground and underground accumulation type: Qingshui (the aboveground dry weight increased by 135.94%, while the underground dry weight grew by 35.26%); ③ aboveground accumulation, underground depletion type: Gannong NO.5 ( ); ④ zero-growth type (there was no significant difference in dry weights, both above and below ground, compared to CK): WL168HQ, WL319HQ and Longzhong; ⑤ aboveground and underground depletion type: WL298HQ (the aboveground dry weight decreased by 29.29%, while the underground dry weight decreased by 20.23%); ⑥ underground depletion type: Gannong NO.3 (the underground dry weight showed a decrease of 34.49%); no type with aboveground consumption and underground accumulation was found. The study clarified the optimal combination of LL2 and Gannong NO.9, finding that biomass accumulation after symbiotic nitrogen fixation is variety-dependent. Full article
(This article belongs to the Section Soil and Plant Nutrition)
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20 pages, 1954 KiB  
Article
The Timing of Phosphorus Availability to Corn: What Growth Stages Are Most Critical for Maximizing Yield?
by Kwame Ampong, Chad J. Penn and James J. Camberato
Agronomy 2024, 14(11), 2731; https://doi.org/10.3390/agronomy14112731 - 19 Nov 2024
Viewed by 979
Abstract
Phosphorus (P) is critical for maximizing agricultural production and represents an appreciable input cost. Geologic sources of P that are most easily mined are a finite resource, while P transported from agricultural land to surface waters contributes to water quality degradation. Improved knowledge [...] Read more.
Phosphorus (P) is critical for maximizing agricultural production and represents an appreciable input cost. Geologic sources of P that are most easily mined are a finite resource, while P transported from agricultural land to surface waters contributes to water quality degradation. Improved knowledge of P timing needs by corn (maize) can help inform management decisions that increase P use efficiency, which is beneficial to productivity, economics, and environmental quality. The objective of this study was to evaluate P application timing on the growth and yield components of corn. Corn was grown in a sand-culture hydroponics system that eliminated confounding plant–soil interactions and allowed for precise control of nutrient availability and timing. All nutrients were applied via drip irrigation and were therefore 100% bioavailable. Eight P timing treatments were tested using “low” (L) and “sufficient” (S) P concentrations. In each of the three growth phases, solution P application levels were changed or maintained, resulting in eight possible combinations, LLL, LLS, LSL, LSS, SLL, SSL, SLS, and SSS, where the first, second, and third letters indicate P solution application levels from planting to V6, V6 to R1, and R1 to R6, respectively. All other nutrients were applied at sufficient levels. Sacrificial samples were harvested at V6, R1, and R6 and evaluated for various yield parameters. Plants that received sufficient P between V6 and R1 produced a significantly higher grain yield than plants that received low P between V6 and R1 regardless of the level of P supply before V6 or after R1. The grain yield of plants that received sufficient P only between V6 and R1 did not differ significantly from plants that received only sufficient P (SSS), due to (1) a greater ear P concentration at R1; (2) an efficient remobilization of assimilates from the stem and leaf to grains between R1 and R6 (source–sink relationship); (3) a higher kernel/grain weight; and (4) less investment into root biomass. Full article
(This article belongs to the Special Issue Safe and Efficient Utilization of Water and Fertilizer in Crops)
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19 pages, 2935 KiB  
Article
Morphoanatomic and Physiological Characterization of Cacao (Theobroma cacao L.) Genotypes in the South of Bahia, Brazil
by Rogerio S. Alonso, Fábio P. Gomes and Delmira C. Silva
Agronomy 2024, 14(11), 2730; https://doi.org/10.3390/agronomy14112730 - 19 Nov 2024
Viewed by 476
Abstract
Cocoa tree genotypes (Theobroma cacao L.) were studied and characterized in terms of their morphoanatomical and physiological attributes in a non-stressful environment, as these attributes are of fundamental importance to understanding the plant’s relationship with the environment. Therefore, the objective of this [...] Read more.
Cocoa tree genotypes (Theobroma cacao L.) were studied and characterized in terms of their morphoanatomical and physiological attributes in a non-stressful environment, as these attributes are of fundamental importance to understanding the plant’s relationship with the environment. Therefore, the objective of this study is to describe morphoanatomical and physiological patterns that can differentiate the seven cocoa genotypes, evaluated under the same conditions of temperature, humidity, and light. The genotypes remained in a greenhouse for 40 days, where sample collection procedures were carried out to analyze gas exchange parameters, such as net photosynthetic rate, stomatal conductance, and transpiration; growth parameters, such as dry weight, height, and leaf area; and the anatomy of leaves and stems via root, stem, and leaf dimensions and histochemistry. The cluster divided the genotypes into six groups. The Ipiranga-01, CCN-10, and PH-16 genotypes were grouped since they presented the highest means of anatomical variables and photosynthetic parameters. The PS-1319 genotype was segregated from the others for having the lowest physiological parameter values. CCN-51 and Cepec-2002 were grouped due to their similarity only in the internal concentration of CO2, while Ipiranga-01, CCN-10, SJ-02, and PH-16 were grouped due to having higher physiological parameters and morphoanatomical variables. The results indicated an intergenotypic variation in physiological and morphoanatomical variables, serving as a basis for the six genotype groups. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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15 pages, 3793 KiB  
Article
A Bibliometric Analysis of Global Research on Climate Change and Agriculture from 1985 to 2023
by Cheng Li, Hongda Yao, Zhaozhe Li, Fang Wu, Bo Liu, Yongping Wu, Kwok Pan Chun, Thanti Octavianti, Xuefeng Cui and Yang Xu
Agronomy 2024, 14(11), 2729; https://doi.org/10.3390/agronomy14112729 - 19 Nov 2024
Viewed by 808
Abstract
With increasing concentrations of atmospheric greenhouse gases, the interaction between climate change and agriculture is receiving widespread attention as part of food security and sustainable human development. However, a comprehensive summary of knowledge in the field of climate change and agriculture from a [...] Read more.
With increasing concentrations of atmospheric greenhouse gases, the interaction between climate change and agriculture is receiving widespread attention as part of food security and sustainable human development. However, a comprehensive summary of knowledge in the field of climate change and agriculture from a scientometric perspective is still lacking. Here, we selected 25,872 papers related to climate change and agriculture from the Web of Science Core Collection database for the period 1985 to 2023 and used VOSviewer software to reveal the research status and trends. The main results were as follows: (1) the number of papers in this field showed a rapidly increasing trend after 2007, with a clear interdisciplinary characteristic; (2) The United States was the most influential country in this field with 6819 papers and 363,109 citations. China had the second highest number of papers (3722 papers), but the Chinese Academy of Sciences was the most influential institution with the most papers. On an author level, Pete Smith was the most influential; (3) All keywords were divided into four different research topics, such as the impact of climate change on agriculture, climate change mitigation and adaptation in agriculture, and crop growth in response to climate change. Among them, some keywords related to climate change adaptation were the most recent topics of interest in this field. These findings provide effective scientific references for relevant scientists and practitioners to better conduct future theoretical and practical research on climate change and agriculture. Full article
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21 pages, 3750 KiB  
Article
Croplands Quality Evaluation of Whole Tillage Layer Based on the Minimum Data Set in Jilin Province, China
by Jinyao Yan, Kangning Xu, Dongming Du, Xinyu Jia, Wei Fan, Yao Liang, Dezhong Li, Ying Zhang, Jun Ren, Jianzhao Liu and Hongguang Cai
Agronomy 2024, 14(11), 2728; https://doi.org/10.3390/agronomy14112728 - 19 Nov 2024
Viewed by 360
Abstract
The aim of this study is to accurately evaluate the quality characteristics of whole tillage cropland and deepen the knowledge of sub-tillage soil quality evaluation in Jilin Province, China. In this study, top-tillage and sub-tillage soil samples were collected from 185 maize continuous [...] Read more.
The aim of this study is to accurately evaluate the quality characteristics of whole tillage cropland and deepen the knowledge of sub-tillage soil quality evaluation in Jilin Province, China. In this study, top-tillage and sub-tillage soil samples were collected from 185 maize continuous cropping areas in Jilin Province, and 12 physicochemical indexes (pH, cation exchange capacity (CEC), soil organic matter (SOM), total nitrogen (TN), total phosphorus (TP), total potassium (TK), available nitrogen (AN), available phosphorus (AP), available potassium (AK), sand, silt, and clay) were used to evaluate the whole tillage layer soil quality index (SQI). The results showed that the whole tillage soil physicochemical indexes in Jilin Province were generally above the moderate level, and nutrient contents increased from West to East among the regions. The minimum data set SQI (SQI-MDS) of the top-tillage and sub-tillage layers were 0.22–0.98 (0.46) and 0.23–0.93 (0.55), respectively. The suitable ranges of MDS parameters for reasonable tillage layers were as follows: top-tillage layer SOM ≥ 34.5 g kg−1, 31.5% ≤ sand ≤ 53.5%, AP ≥ 32.1 mg kg−1, and TK ≥ 15.18 g kg−1; sub-tillage layer 31.3% ≤ sand ≤ 51.2%, TN ≥ 1.48 g kg−1, 6.4 ≤ pH ≤ 7.1, and AK ≥ 157.6 mg kg−1. In summary, the SQI and evaluation indexes of the top-tillage and sub-tillage layers in different ecological zones are varied. It is necessary to adjust the evaluation index thresholds in combination with the actual conditions to establish a more accurate evaluation index system of the whole tillage soil quality. Full article
(This article belongs to the Section Farming Sustainability)
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19 pages, 1811 KiB  
Article
Postharvest LED Treatment of Tomatoes Harvested at an Early Stage of Coloration
by Maria Grzegorzewska, Justyna Szwejda-Grzybowska, Monika Mieszczakowska-Frąc and Bożena Matysiak
Agronomy 2024, 14(11), 2727; https://doi.org/10.3390/agronomy14112727 - 19 Nov 2024
Viewed by 472
Abstract
The tomato plant is one of the most important vegetable crops, with a global production of around 188 million tones. The greatest losses in quantity and quality occur during storage, transport, and sale. The aim of the study was to determine the effect [...] Read more.
The tomato plant is one of the most important vegetable crops, with a global production of around 188 million tones. The greatest losses in quantity and quality occur during storage, transport, and sale. The aim of the study was to determine the effect of irradiation on the quality and storability of the tomato ‘Tomimaru Muchoo’. Fruit harvested at the turning ripening stage were illuminated for the first two weeks at 15 °C with four visible LED light spectra, with different percentages of blue, green, and red light (BGR). The illumination times were 4 and 8 h per day (hpd). After illumination, the tomatoes were stored at 20 °C in the dark for 4 weeks. Immediately after 14 d of illumination, all tomatoes were fully ripe, although they showed varying red color intensity. In addition, all fruit retained very good quality and freshness. During further storage at 20 °C, there was a gradual decrease in tomato quality. However, LED lighting helped delay softening, reduce rotting, and thus maintain better tomato quality. Longer daily irradiation (8 h) delayed tomato senescence to a greater extent than shorter irradiation (4 hpd). Comparing the spectra, the greatest reduction in softening and rotting occurred in tomatoes illuminated with the spectrum containing the highest amount of blue light (56%). These tomatoes also maintained the lowest color index (a*/b*) throughout storage at 20 °C, which was especially evident in tomatoes that had been illuminated for 8 hpd. The light treatment influenced the maintenance of higher levels of ascorbic acid and antioxidant activity in tomatoes. However, irradiation did not increase the polyphenol content of tomatoes or reduce the lycopene levels in the fruit. Overall, the results showed that LED irradiation during storage improves storability and affects the health-promoting components of tomato fruit. It is a promising tool for reducing losses of horticultural produce. Full article
(This article belongs to the Special Issue Light Environment Regulation of Crop Growth)
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13 pages, 762 KiB  
Article
Utilising Reclaimed Water for Papaya (Carica papaya L.) Cultivation in Cape Verde: A Detailed Case Study
by Vanessa Mendoza-Grimón, Regla Amorós, Juan Ramón Fernández-Vera, Ernestina Lopes da Veiga and Maria del Pino Palacios-Díaz
Agronomy 2024, 14(11), 2726; https://doi.org/10.3390/agronomy14112726 - 19 Nov 2024
Viewed by 530
Abstract
Papaya (Carica papaya L.) is essential for food security, providing economic benefits in tropical and subtropical regions. However, its high water requirements pose challenges, especially in water-scarce areas like Cape Verde. This study hypothesises that reclaimed water (RW) irrigation can promote papaya [...] Read more.
Papaya (Carica papaya L.) is essential for food security, providing economic benefits in tropical and subtropical regions. However, its high water requirements pose challenges, especially in water-scarce areas like Cape Verde. This study hypothesises that reclaimed water (RW) irrigation can promote papaya production and investigates how water can be managed to ensure sustainability and increase agricultural productivity. An experiment was conducted using Carica papaya L. var Solo-nº8, focusing on subsurface drip irrigation (SDI) with RW. Three irrigation treatments were compared, namely, T1: RW with SDI; T2: RW with drip irrigation (DI); and T3: conventional water (CW) with SDI. The study evaluated crop yields and water use efficiency (WUE) over 13 months, monitoring soil and water quality and papaya growth and yields. Despite quality concerns, RW maintained soil fertility and ensured sustainable reuse. Papaya demonstrated high adaptability and productivity under experimental conditions. T1 significantly increased the cumulative fruit yield (69 t/ha) compared to T2 (65 t/ha) and T3 (62.7 t/ha). T1 also had the highest WUE (5.97 kg/m3), demonstrating the effectiveness of RW and SDI in optimising water use. The results indicate that RW can be a viable alternative to conventional water sources, providing new insights into sustainable agricultural practices and improving food security in arid and semi-arid regions. Full article
(This article belongs to the Special Issue Effect of Brackish and Marginal Water on Irrigated Agriculture)
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18 pages, 1615 KiB  
Article
Effect of Biochar and Wood Distillate on Vegeto-Productive Performances of Tomato (Solanum lycopersicum L.) Plants, var. Solarino, Grown in Soilless Conditions
by Anna Agosti, Samreen Nazeer, Lorenzo Del Vecchio, Leandra Leto, Andrea Di Fazio, Jasmine Hadj-Saadoun, Alessia Levante, Massimiliano Rinaldi, Rohini Dhenge, Camilla Lazzi, Martina Cirlini and Benedetta Chiancone
Agronomy 2024, 14(11), 2725; https://doi.org/10.3390/agronomy14112725 - 19 Nov 2024
Viewed by 511
Abstract
Nowadays, tomato, a commercially important crop, is increasingly cultivated in a soilless cultivation system to counteract climate change. Normally, this system uses cocopeat as a substrate, but its high cost and environmental impact have led to growing interest in alternatives like biochar (BC). [...] Read more.
Nowadays, tomato, a commercially important crop, is increasingly cultivated in a soilless cultivation system to counteract climate change. Normally, this system uses cocopeat as a substrate, but its high cost and environmental impact have led to growing interest in alternatives like biochar (BC). In addition, biostimulants, such as wood distillate (WD), a pyrolysis by-product, are increasingly being used to improve fruit yield and quality. BC was used to partially replace (2% and 5%) cocopeat in growth bags for soilless tomato cultivation. Moreover, WD (3 mL/L) was distributed in the substrate every two weeks. The effect of BC and WD on tomato plant growth, fruit quality, and substrate microbial community was investigated. The integration of BC and WD into a soilless growing system for tomato cultivation can improve the fruit quality and influence the microbial activity of the substrate. Replacing part of the cocopeat in the substrate with BC and using an agri-waste-derived biostimulant represent a step forward in making agriculture more sustainable. Full article
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17 pages, 2539 KiB  
Review
Effects of Straw and Green Manure Addition on Crop Yield, Soil Properties and CH4 Emissions: A Meta-Analysis
by Qi Jia, Hongjun Zheng, Zhaoji Shi, Xing Liu, Daolin Sun and Jiaen Zhang
Agronomy 2024, 14(11), 2724; https://doi.org/10.3390/agronomy14112724 - 19 Nov 2024
Viewed by 435
Abstract
The incorporation of organic amendments is widely acknowledged for its capacity to enhance soil fertility and boost crop productivity. However, whether the addition of organic amendments can improve soil quality and crop production, simultaneously causing methane emissions in paddy fields, deserves further investigation. [...] Read more.
The incorporation of organic amendments is widely acknowledged for its capacity to enhance soil fertility and boost crop productivity. However, whether the addition of organic amendments can improve soil quality and crop production, simultaneously causing methane emissions in paddy fields, deserves further investigation. In this meta-analysis, the effects of different organic amendments on soil nutrient levels, rice yield and CH4 emissions were evaluated in paddy fields based on 328 observations from 77 field trial studies. Our results revealed that the addition of organic amendments significantly increased soil organic carbon (9.47%), microbial biomass carbon (21.13%), microbial biomass nitrogen (28.91%), urease (25.07%) and β-glucosidase (24.41%). Moreover, straw addition significantly increased the CH4 emissions by 152.68% and rice yield by 7.16%; green manure addition significantly increased CH4 emissions by 71.62% and rice yield by 10.09%, respectively. Although both increased the CH4 emissions, green manure had the ability to improve the availability of N, which could improve rice uptake. The regression results showed that the variation in crop yield, soil nutrients and CH4 emissions are influenced through the types and quality of organic amendments. Overall, this study suggests that organic amendments are beneficial in maintaining soil quality and improving rice yield, whereas it also increased the CH4 emissions. These meta-analysis results may provide some references for optimizing organic amendments incorporated into the soil to sustain soil fertility and crop production while mitigating soil constraints and methane emissions. Full article
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16 pages, 1084 KiB  
Perspective
The Role of Bacillus sp. in Reducing Chemical Inputs for Sustainable Crop Production
by Luziane Ramos Sales and Everlon Cid Rigobelo
Agronomy 2024, 14(11), 2723; https://doi.org/10.3390/agronomy14112723 - 19 Nov 2024
Viewed by 799
Abstract
Bacillus species have emerged as promising agents for reducing chemical input in sustainable crop production. These bacteria possess diverse abilities, including nutrient cycling, phytohormone production, and stress tolerance enhancement in plants. Recent advances in omics technologies have revolutionized the understanding of Bacillus sp. [...] Read more.
Bacillus species have emerged as promising agents for reducing chemical input in sustainable crop production. These bacteria possess diverse abilities, including nutrient cycling, phytohormone production, and stress tolerance enhancement in plants. Recent advances in omics technologies have revolutionized the understanding of Bacillus sp. biology and expanded their potential applications. Bacillus-based products have demonstrated effectiveness in reducing nitrogen and phosphorus fertilizer requirements while maintaining or improving crop yields. However, their field performance may be inconsistent, highlighting the need for further research to optimize formulations and delivery methods. The compatibility with other agricultural inputs varies depending on the specific chemicals and conditions involved. The introduction of Bacillus sp. can significantly affect the soil microbiome, potentially promoting plant growth and microbial diversity. Strain specificity and host compatibility play crucial roles in determining the success of host–parasite interactions. The regulatory and safety aspects require further investigation to ensure the safe and sustainable use of Bacillus species in various applications. The integration of Bacillus-based products into existing crop management systems, following the principles of Integrated Pest Management and Integrated Crop Management, is essential for their successful implementation. This review provides a comprehensive overview of the current knowledge on Bacillus sp. for reducing chemical inputs for sustainable crop production, highlighting the challenges and opportunities for future research and application. Full article
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12 pages, 5399 KiB  
Article
Deciphering Codon Usage Patterns in the Mitochondrial Genome of the Oryza Species
by Yuyang Zhang, Yunqi Ma, Huanxi Yu, Yu Han and Tao Yu
Agronomy 2024, 14(11), 2722; https://doi.org/10.3390/agronomy14112722 - 18 Nov 2024
Viewed by 454
Abstract
Rice (Oryza) is a genus in the Gramineae family, which has grown widely all over the world and is a staple food source for people’s survival. The genetic information of rice has garnered significant attention in recent years, prompting numerous researchers [...] Read more.
Rice (Oryza) is a genus in the Gramineae family, which has grown widely all over the world and is a staple food source for people’s survival. The genetic information of rice has garnered significant attention in recent years, prompting numerous researchers to conduct extensive investigations in this field. But rice mitochondrial codon usage patterns have received little attention. The present study systematically analyzed the codon usage patterns and sources of variance in the mitochondrial genome sequences of five rice species by the CodonW and R software programs. Our results revealed that the GC content of codons in rice mitochondrial genome genes was determined to be 43.60%. Notably, the individual codon positions exhibited distinct GC contents: 48.00% for position 1, 42.65% for position 2, and 40.16% for position 3. These findings suggest the preference of the rice mitochondrial genome for codons ending in A or U. A weak codon bias was observed, with the effective number of codons (ENC) varying between 40.02 and 61.00, with an average value of 54.34. Subsequently, we identified 25 identical high-frequency codons in five rice mitochondrial genomes, with 11 codons ending in A and 12 codons ending in U. The regression lines in the neutrality plot exhibited slopes of less than 0.5 in five rice species, indicating a predominant role of natural selection, while mutation pressure remained relatively insignificant. In the PR2-plot analysis, most of the genes were located in the right half of the plot, indicating that the third base of the synonymous codon was preferred to end in G than C. Additionally, the ENC plot and ENC ratio analysis unveiled that codon preferences in the rice mitochondrial genome were predominantly influenced by natural selection rather than mutational pressure. The analysis of correspondence revealed distinct variations in the codon usage pattern across five rice mitochondrial genomes. Based on the RSCU values of species, a cluster tree was inconsistent with the mitochondrial genetic data, indicating that RSCU data could not be used as a basis for classification at the species level in the Oryza genus. These results will help decide the specific types of natural selection pressures influencing codon usage and improve the expression of exogenous genes in rice mitochondrial genomes by optimizing their codons. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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21 pages, 7768 KiB  
Article
Yield and Yield Parameters Response of Cabbage to Partial Root Drying and Conventional Deficit Irrigation
by Halil Demir, Harun Kaman, İlker Sönmez, Ufuk Uçan and İsmail Hakkı Akgün
Agronomy 2024, 14(11), 2721; https://doi.org/10.3390/agronomy14112721 - 18 Nov 2024
Viewed by 519
Abstract
Irrigation is one of the most important cultural practices in sustainable cabbage cultivation. While most studies on irrigation in cabbage have focused on conventional deficit irrigation (DI) practices, some plants’ water requirements under the partial root drying (PRD) technique are not yet very [...] Read more.
Irrigation is one of the most important cultural practices in sustainable cabbage cultivation. While most studies on irrigation in cabbage have focused on conventional deficit irrigation (DI) practices, some plants’ water requirements under the partial root drying (PRD) technique are not yet very clear. In this study, the possible responses of cabbage, such as growth, some quality, yield, yield parameters, water use efficiency (WUE), irrigation water use efficiency (IWUE), and yield response factor (ky), were investigated at four irrigation water levels (125%, 100%, 75%, and 50%) with DI and PRD techniques for 2 years. Irrigation treatments were carried out by the drip irrigation method, and the amount of irrigation water for the control (I-100) was calculated using the measurements taken from the Class-A evaporation container. A total of eight irrigation treatments—four conventional deficit irrigation (I-125, I-100, I-75, I-50) and four partial root drying (PRD-125, PRD-100, PRD75, PRD-50)—were considered in the study. ET values were determined between 47.69–60.78 mm in the first year and 80.11–101.37 mm in the second year. Total and marketable yield values, WUE and IWUE values, were significantly affected by the irrigation treatments. As a result of the research, the highest total and marketable yields were found in I-125, PRD-125, I-100, and PRD-100 treatments. It was important that WUE and IWUE values reached their highest levels in full irrigation and 25% more irrigation treatments as well as in deficit irrigation treatments. In conditions where irrigation water is scarce and expensive, I-75 and PRD-75 applications are also recommended. While an increase in cabbage head height and diameter was observed with increasing irrigation water level, SSC and L values increased at deficit irrigations. According to the correlation coefficients, a positive relationship was determined between marketable yield and head and stem diameter, head height, WUE, and ET for marketable yield. In addition, it was predicted that I-50 and PRD-50 treatments may also be advantageous if the “kc” plant coefficient cover percentage was increased. Full article
(This article belongs to the Special Issue Influence of Irrigation and Water Use on Agronomic Traits of Crop)
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23 pages, 1407 KiB  
Article
How Does Herbicide Resistance Change Farmer’s Weed Management Decisions? Evidence from the Roundup Ready Experiment
by Huichun Sun, Terrance Hurley, George B. Frisvold, Katherine Dentzman, David Ervin, Wesley Everman, Jeffrey Gunsolus, Jason Norsworthy and Micheal Owen
Agronomy 2024, 14(11), 2720; https://doi.org/10.3390/agronomy14112720 - 18 Nov 2024
Viewed by 683
Abstract
Adoption of diverse weed management practices is viewed as essential for slowing the spread of herbicide-resistant (HR) weeds. Yet, adoption of diverse tactics has remained low, while there has been explosive growth of resistant weeds. This study analyzes U.S.-farm-level data to identify factors [...] Read more.
Adoption of diverse weed management practices is viewed as essential for slowing the spread of herbicide-resistant (HR) weeds. Yet, adoption of diverse tactics has remained low, while there has been explosive growth of resistant weeds. This study analyzes U.S.-farm-level data to identify factors affecting adoption of diverse weed management practices. This study uses directed acyclic graphs (DAGs) to consider how practice adoption is influenced by different causal pathways between farmer and farm characteristics and farmer awareness of and concern over HR weeds. This study then uses multiple regression analysis to estimate the direct and indirect pathways that influence practice adoption. Respondents relied more heavily on herbicide-based weed control methods than on mechanical or cultural methods. Concern over herbicide resistance increased the number of practices farmers adopted and the percentage of acres where farmers implemented these practices. Practice adoption was negatively associated with increasing levels of farmer risk aversion. Technological optimism—belief that new herbicides would soon be developed to counter HR weeds—discouraged diverse herbicide use practices that combat resistance, but encouraged use of some non-chemical weed control methods. Perceived weed dispersal externalities (from weed mobility) led to more diverse weed management, running counter to hypotheses that greater mobility reduces incentives for individual resistance management. Full article
(This article belongs to the Section Weed Science and Weed Management)
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