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Microbiology Research, Volume 16, Issue 3

2025 March - 19 articles

Cover Story: The human gut microbiota is a complex community that influences human physiology through its metabolic activities and interactions with the host. The development of the microbiota is affected by factors like genetics, geography, socio-economic status, diet, and antibiotic use. However, the modulation of the microbiota across life stages is not yet well understood. While previous studies have examined variations in core bacterial taxa, no studies have explored the division and relationships between bacteria in the microbiota of individuals from different age groups. In this study, we compared the intestinal microbiota across age groups, identifying life stages in which it evolves in composition and diversity, and predicted the metabolic roles of different bacterial groups, highlighting their importance to human health. View this paper
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Articles (19)

  • Article
  • Open Access
1 Citations
4,059 Views
21 Pages

Shotgun Metagenomics Reveals Metabolic Potential and Functional Diversity of Microbial Communities of Chitu and Shala Soda Lakes in Ethiopia

  • Gessesse Kebede Bekele,
  • Ebrahim M. Abda,
  • Fassil Assefa Tuji,
  • Abu Feyisa Meka and
  • Mesfin Tafesse Gemeda

Soda lakes are extreme saline–alkaline environments that harbor metabolically versatile microbial communities with significant biotechnological potential. This study employed shotgun metagenomics (NovaSeq PE150) to investigate the functional di...

  • Article
  • Open Access
1 Citations
3,357 Views
20 Pages

Antisense Oligonucleotide-Capped Gold Nanoparticles as a Potential Strategy for Tackling Antimicrobial Resistance

  • Cesar Rodolfo Garza-Cardenas,
  • Angel Leon-Buitimea,
  • A. A. Siller-Ceniceros and
  • Jose Ruben Morones-Ramirez

Multidrug-resistant (MDR) bacterial pathogens pose a serious threat to global health, underscoring the urgent need for innovative therapeutic strategies. In this work, we designed and characterized thiol-modified antisense oligonucleotide-capped gold...

  • Article
  • Open Access
4 Citations
5,764 Views
14 Pages

The development of microbial-based biostimulants to enhance the growth of crops and support a healthy and sustainable soil requires the isolation and large-scale industrial culture of effective microorganisms. In this study, work was undertaken to is...

  • Brief Report
  • Open Access
1 Citations
2,363 Views
14 Pages

Effect of Tilapia Parvovirus (TiPV) on Fish Health: An In Vitro Approach

  • Vikash Kumar,
  • Basanta Kumar Das,
  • Anupam Adhikari,
  • Kampan Bisai and
  • Biswajit Mandal

Tilapia Parvovirus (TiPV) is a rising pathogen responsible for high mortality in tilapia aquaculture. Understanding TiPV’s pathogenesis is crucial for developing effective management strategies. This study aimed to elucidate TiPV pathogenesis b...

  • Review
  • Open Access
4 Citations
3,106 Views
22 Pages

Microbial Metallophores in the Productivity of Agroecosystems

  • Lily X. Zelaya-Molina,
  • Ismael F. Chávez-Díaz,
  • José A. Urrieta-Velázquez,
  • Marco A. Aragón-Magadan,
  • Cristo O. Puente-Valenzuela,
  • Mario Blanco-Camarillo,
  • Sergio de los Santos-Villalobos and
  • Juan Ramos-Garza

Microbial metallophores are low-molecular-weight chelating agents produced by microorganisms to acquire essential metal ions. Their biosynthesis, transport, and regulation involve complex processes, specialized enzymatic machinery, and intricate regu...

  • Systematic Review
  • Open Access
2 Citations
19,229 Views
14 Pages

Prevention of Recurrent Urinary Tract Infection in Women: An Update

  • Elizabeth Corrales-Acosta,
  • Eulalia Cuartiella Zaragoza,
  • Mar Monzó Pérez,
  • Sheila Benítez Perdomo,
  • Juan Guillermo Corrales-Riveros and
  • Mariela Corrales

Recurrent urinary tract infection (rUTI) is a significant public health problem in women. General measures to prevent recurrence include behavioral changes and increased fluid intake, cranberry ingest, use of methenamine hippurate, antibiotic prophyl...

  • Article
  • Open Access
1 Citations
1,556 Views
11 Pages

Invasive infection by Streptococcus agalactiae (GBS) is a significant cause of death in newborn babies. In Thailand, data on strain distribution in GBS, specific virulence genes, and susceptibility patterns are limited. Therefore, our study aimed to...

  • Article
  • Open Access
2 Citations
2,229 Views
15 Pages

The study of the metagenomes of bacterial communities in saline areas is relevant in connection with the global salinization of agricultural lands. The aim of this study was to investigate the biodiversity and structure of rhizobacterial communities...

  • Article
  • Open Access
3 Citations
4,637 Views
15 Pages

Antimicrobial Activity and the Synergy Potential of Cinnamomum aromaticum Nees and Syzygium aromaticum (L.) Merr. et Perry Essential Oils with Antimicrobial Drugs

  • Soraia El Baz,
  • Bouchra Soulaimani,
  • Imane Abbad,
  • Zineb Azgaou,
  • El Mostapha Lotfi,
  • Mustapha Malha and
  • Noureddine Mezrioui

Antimicrobial resistance is a growing global challenge, rendering many standard treatments ineffective. Essential oils (EOs) of cinnamon (Cinnamomum aromaticum Nees) and clove (Syzygium aromaticum (L.) Merr. et Perry) may offer an alternative solutio...

  • Article
  • Open Access
1 Citations
5,499 Views
18 Pages

A Comprehensive Methodology for Identifying Pseudomonas aeruginosa Strains Exhibiting Biofilm and Virulence Factor Traits and Assessment of Biofilm Resistance Against Commercial Disinfectant

  • Maha Guesmi,
  • Mohamed Ben Hmida,
  • Salma Smaoui,
  • Mariem Ayadi,
  • Salma Maalej,
  • Salma Toumi,
  • Sami Aifa,
  • Khawla Kammoun,
  • Férièle Messadi-Akrout and
  • Sami Mnif

In this study, biofilm formation and the production of key virulence factors were systematically evaluated across 33 strains of Pseudomonas aeruginosa isolated from diverse hospital environments in Tunisia. Among these, 13 strains demonstrated strong...

  • Communication
  • Open Access
1,654 Views
16 Pages

Functional and Taxonomic Insights into Root Endophytic Bacterial Communities in Hybrid Tomato and Finger Millet: Implications for Crop Resilience and Growth

  • Surendirakumar Kannaiah,
  • Ramganesh Selvarajan,
  • Salam Nirmalashachi Chanu,
  • Radha Raman Pandey and
  • Akebe Luther King Abia

Root endophytic microbial communities play a key role in plant health and productivity, yet the extent to which these communities vary across different crop species remains underexplored. This study aimed to investigate the root endophytic bacterial...

  • Article
  • Open Access
2,052 Views
20 Pages

Quantitative Differences in the Human Intestinal Microbiota Through the Stages of Life: Infants, Children, Adults and the Elderly

  • Jelena Štšepetova,
  • Natalja Šebunova,
  • Tiia Voor,
  • Hiie Soeorg,
  • Merle Rätsep,
  • Reet Mändar,
  • Marika Mikelsaar and
  • Epp Sepp

The aim of this study was to compare the human intestinal microbiota in different age groups, elucidating the precise stages of life in which the gut microbiota evolves its specific characteristics in terms of composition and diversity, as well as as...

  • Article
  • Open Access
1 Citations
1,359 Views
21 Pages

Biocontrol of Cassida vittata Vill. (Coleoptera: Chrysomelidae) in Sugar Beet Crops Using Streptomyces sp. Strains

  • Mohamed El Aalaoui,
  • Said Rammali,
  • Fatima Zahra Kamal,
  • Bouchaib Bencharki,
  • Alin Ciobică,
  • Mihai Hogas,
  • Bogdan Novac and
  • Mohamed Sbaghi

Cassida vittata Vill. is a major pest of sugar beet crops worldwide. This study evaluated the efficacy of Streptomyces sp. strains E23-2, E23-9, E23-3, and E25-12 in managing this pest under both laboratory bioassays (26 ± 2 °C, 60 ±...

  • Case Report
  • Open Access
2 Citations
1,991 Views
15 Pages

Multidrug-Resistant Extraintestinal Pathogenic Escherichia coli Exhibits High Virulence in Calf Herds: A Case Report

  • Di-Di Zhu,
  • Xin-Rui Li,
  • Teng-Fei Ma,
  • Jia-Qi Chen,
  • Chuan-Hui Ge,
  • Shao-Hua Yang,
  • Wei Zhang,
  • Jiu Chen,
  • Jia-Jia Zhang and
  • Hong-Jun Yang
  • + 2 authors

Extraintestinal pathogenic Escherichia coli (ExPEC) is a group of Escherichia coli strains that can cause severe infectious diseases outside the gastrointestinal tract, such as urinary tract infections, meningitis, septicemia, etc. We report a case o...

  • Case Report
  • Open Access
5,789 Views
12 Pages

Human Toxocariasis: Presenting a Case Report of Eosinophilic Myocarditis Associated with Toxocara canis Infection and a Literature Review

  • Anna Nikopoulou,
  • Lazaros Sideras,
  • Athanasia Marina Peristeri,
  • Panagiota Ligda,
  • Olympia Akritidou and
  • Smaragda Sotiraki

Toxocariasis is a parasitic zoonosis caused by ascarid nematodes of dogs (Toxocara canis) or cats (Toxocara cati). Transmission to humans can occur in various ways, most commonly through the ingestion of infective embryonated eggs in soil or on veget...

  • Article
  • Open Access
1,525 Views
11 Pages

N-Acyl Homoserine Lactone-Degrading Bacillus sp. Improves the Survival of Penaeus vannamei Larvae Challenged with Vibrio harveyi

  • Reinaldo González,
  • Héctor Cabrera,
  • Yufeng Niu,
  • Alessandra Roncarati,
  • Adrian Toledo,
  • Yulaine Corrales,
  • Yanelis Quevedo,
  • Livio Galosi,
  • Peter Bossier and
  • Amilcar Arenal

This study aimed to isolate AHL-degrading bacteria from the intestine of Penaeus vannamei and evaluate their ability to control pathogenic Vibrio harveyi in P. vannamei larvae. Twenty-seven isolates were obtained from the digestive tract of healthy P...

  • Article
  • Open Access
1,775 Views
21 Pages

Broad Spectrum Antimicrobial Activity of Bacteria Isolated from Vitis vinifera Leaves

  • Camilla Mandorino,
  • Flavia Angela Maria Maggiolini,
  • Margherita D’Amico,
  • Annalisa Prencipe,
  • Antonella Salerno,
  • Carlo Bergamini,
  • Carlo Pazzani,
  • Maria Francesca Cardone and
  • Antonio Domenico Marsico

It is known that plant-associated microorganisms must be considered as key drivers for plant health, productivity, community composition, and ecosystem functioning. Much attention has been paid to the exploration of the plant-associated microbiome in...

  • Article
  • Open Access
1 Citations
1,622 Views
14 Pages

Unveiling the Kadaknath Gut Microbiome: Early Growth Phase Spatiotemporal Diversity

  • Amruta Nair,
  • Swapnil Prakash Doijad,
  • Mangesh Vasant Suryavanshi,
  • Anwesha Dey,
  • Satya Veer Singh Malik,
  • Bas E. Dutilh and
  • Sukhadeo Baliram Barbuddhe

The early growth phase is a critical period for the development of the chicken gut microbiome. In this study, the spatiotemporal diversity of the gastrointestinal microbiota, shifts in taxonomic composition, and relative abundances of the main bacter...

  • Article
  • Open Access
3 Citations
1,258 Views
14 Pages

The Potential Role of rpoS and ompR in the Acid Resistance and Desiccation Tolerance of Cronobacter malonaticus Strains

  • Abdlrhman M. Alsonosi,
  • Khaled M. Ibrahim,
  • Bassam A. Elgamoudi,
  • Mahmoud B. Agena and
  • Stephen J. Forsythe

In this study, the acid resistance and desiccation tolerance of 20 strains of Cronobacter malonaticus were explored, and their genetic variances with respect to their survival in stressful conditions were identified by genomic analysis. The strains s...

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Microbiol. Res. - ISSN 2036-7481