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14 pages, 5827 KB  
Article
Effect of High Temperature Precipitation and Heating Dissolution on Microstructure and Mechanical Properties of Alloy 2618
by Yuan Yao, Jianhua Wang, Xuping Su, Ya Liu, Cengjie Shi, Shiyun He and Zhiwei Li
Materials 2026, 19(5), 903; https://doi.org/10.3390/ma19050903 - 27 Feb 2026
Viewed by 395
Abstract
This study employs high-temperature precipitation combined with heating dissolution to redistribute solute atoms near the grain boundaries of alloy 2618, regulating the width of the precipitation-free zone at the grain boundaries and the aging precipitates in their vicinity. Microscopy techniques, including high-resolution scanning [...] Read more.
This study employs high-temperature precipitation combined with heating dissolution to redistribute solute atoms near the grain boundaries of alloy 2618, regulating the width of the precipitation-free zone at the grain boundaries and the aging precipitates in their vicinity. Microscopy techniques, including high-resolution scanning electron microscopy and transmission electron microscopy, were used to observe the grain-boundary structure of the alloy. A universal electronic tensile testing machine and an impact tester were used to evaluate the mechanical properties of the alloy. The results show that solution treatment at 535 °C for 30 min, followed by high-temperature precipitation at 470 °C for 10 min and subsequent heating dissolution at 535 °C for 10 min, significantly narrowed the width of the precipitation-free zone at the grain boundaries of alloy 2618. The number of precipitated phases in the vicinity of the grain boundaries increased. Compared with the conventional solution aging treatment of alloy 2618, the tensile strength and impact toughness of the alloy subjected to high-temperature precipitation, heating dissolution, and aging increased by 5.0% and 23.7%, respectively. Thus, the synergistic effects of high-temperature precipitation and heating dissolution effectively improved the grain-boundary structure and enhanced the overall mechanical properties of alloy 2618. Full article
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24 pages, 1850 KB  
Review
VLEO Satellite Development and Remote Sensing: A Multidomain Review of Engineering, Commercial, and Regulatory Solutions
by Ramson Nyamukondiwa, Walter Peeters and Sradha Udayakumar
Aerospace 2026, 13(2), 121; https://doi.org/10.3390/aerospace13020121 - 27 Jan 2026
Viewed by 2657
Abstract
Very Low Earth Orbit (VLEO) satellites, operating at altitudes below 450 km, provide tremendous potential in the domain of remote sensing. Their proximity to Earth offers high resolution, low latency, and rapid revisit rates, allowing continuous monitoring of dynamic systems and real-time delivery [...] Read more.
Very Low Earth Orbit (VLEO) satellites, operating at altitudes below 450 km, provide tremendous potential in the domain of remote sensing. Their proximity to Earth offers high resolution, low latency, and rapid revisit rates, allowing continuous monitoring of dynamic systems and real-time delivery of vertically integrated earth observation products. Nonetheless, the application of VLEO is not yet fully realized due to numerous complexities associated with VLEO satellite development, considering atmospheric drag, short satellite lifetimes, and social, political, and legal regulatory fragmentation. This paper reviews the recent technological developments supporting sustainable VLEO operations with regards to aerodynamic satellite design, atomic oxygen barriers, and atmospheric-breathing electric propulsion (ABEP). Furthermore, the paper provides an overview of the identification of regulatory and economic barriers that extort additional costs for VLEO ranging from frequency band allocation and space traffic management to life-cycle cost and uncertain commercial demand opportunities. Nevertheless, the commercial potential of VLEO operations is widely acknowledged, and estimated to lead to an economic turnover in the order of 1.5 B USD in the next decade. Learning from the literature and prominent past experiences such as the DISCOVERER and CORONA programs, the study identifies key gaps and proposes a roadmap to sustainable VLEO development. The proposed framework emphasizes modular and serviceable satellite platforms, hybrid propulsion systems, and globally harmonized governance in space. Ultimately, public–private partnerships and synergies across sectors will determine whether VLEO systems become part of the broader space infrastructure unlocking new capabilities for near-Earth services, environmental monitoring, and commercial innovation at the edge of space. Full article
(This article belongs to the Section Astronautics & Space Science)
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33 pages, 1141 KB  
Review
The Protonic Brain: Nanoscale pH Dynamics, Proton Wires, and Acid–Base Information Coding in Neural Tissue
by Valentin Titus Grigorean, Catalina-Ioana Tataru, Cosmin Pantu, Felix-Mircea Brehar, Octavian Munteanu and George Pariza
Int. J. Mol. Sci. 2026, 27(2), 560; https://doi.org/10.3390/ijms27020560 - 6 Jan 2026
Viewed by 1523
Abstract
Emerging research indicates that neuronal activity is maintained by an architectural system of protons in a multi-scale fashion. Proton architecture is formed when organelles (such as mitochondria, endoplasmic reticulum, lysosomes, synaptic vesicles, etc.) are coupled together to produce dynamic energy domains. Techniques have [...] Read more.
Emerging research indicates that neuronal activity is maintained by an architectural system of protons in a multi-scale fashion. Proton architecture is formed when organelles (such as mitochondria, endoplasmic reticulum, lysosomes, synaptic vesicles, etc.) are coupled together to produce dynamic energy domains. Techniques have been developed to visualize protons in neurons; recent advances include near-atomic structural imaging of organelle interfaces using cryo-tomography and nanoscale resolution imaging of organelle interfaces and proton tracking using ultra-fast spectroscopy. Results of these studies indicate that protons in neurons do not diffuse randomly throughout the neuron but instead exist in organized geometric configurations. The cristae of mitochondrial cells create oscillating proton micro-domains that are influenced by the curvature of the cristae, hydrogen bonding between molecules, and localized changes in dielectric properties that result in time-patterned proton signals that can be used to determine the metabolic load of the cell and the redox state of its mitochondria. These proton patterns also communicate to the rest of the cell via hydrated aligned proton-conductive pathways at the mitochon-dria-endoplasmic reticulum junctions, through acidic lipid regions, and through nano-tethered contact sites between mitochondria and other organelles, which are typically spaced approximately 10–25 nm apart. Other proton architectures exist in lysosomes, endosomes, and synaptic vesicles. In each of these organelles, the V-ATPase generates steep concentration gradients across their membranes, controlling the rate of cargo removal from the lumen of the organelle, recycling receptors from the surface of the membrane, and loading neurotransmitters into the vesicles. Recent super-resolution pH mapping has indicated that populations of synaptic vesicles contain significant heterogeneity in the amount of protons they contain, thereby influencing the amount of neurotransmitter released per vesicle, the probability of vesicle release, and the degree of post-synaptic receptor protonation. Additionally, proton gradients in each organelle interact with the cytoskeleton: the protonation status of actin and microtubules influences filament stiffness, protein–protein interactions, and organelle movement, resulting in the formation of localized spatial structures that may possess some type of computational significance. At multiple scales, it appears that neurons integrate the proton micro-domains with mechanical tension fields, dielectric nanodomains, and phase-state transitions to form distributed computing elements whose behavior is determined by the integration of energy flow, organelle geometry, and the organization of soft materials. Alterations to the proton landscape in neurons (e.g., due to alterations in cristae structure, drift in luminal pH, disruption in the hydration-structure of the cell, or imbalance in the protonation of cytoskeletal components) could disrupt the intracellular signaling network well before the onset of measurable electrical or biochemical pathologies. This article will summarize evidence indicating that proton–organelle interaction provides a previously unknown source of energetic substrate for neural computation. Using an integrated approach combining nanoscale proton energy, organelle interface geometry, cytoskeletal mechanics, and AI-based multiscale models, this article outlines current principles and unresolved questions related to the subject area as well as possible new approaches to early detection and precise intervention of pathological conditions related to altered intracellular energy flow. Full article
(This article belongs to the Special Issue Molecular Synapse: Diversity, Function and Signaling)
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37 pages, 1846 KB  
Review
Visualization Techniques for Spray Monitoring in Unmanned Aerial Spraying Systems: A Review
by Jungang Ma, Hua Zhuo, Peng Wang, Pengchao Chen, Xiang Li, Mei Tao and Zongyin Cui
Agronomy 2026, 16(1), 123; https://doi.org/10.3390/agronomy16010123 - 4 Jan 2026
Cited by 4 | Viewed by 1531
Abstract
Unmanned Aerial Spraying Systems (UASS) has rapidly advanced precision crop protection. However, the spray performance of UASSs is influenced by nozzle atomization, rotor-induced airflow, and external environmental conditions. These factors cause strong spatiotemporal coupling and high uncertainty. As a result, visualization-based monitoring techniques [...] Read more.
Unmanned Aerial Spraying Systems (UASS) has rapidly advanced precision crop protection. However, the spray performance of UASSs is influenced by nozzle atomization, rotor-induced airflow, and external environmental conditions. These factors cause strong spatiotemporal coupling and high uncertainty. As a result, visualization-based monitoring techniques are now essential for understanding these dynamics and supporting spray modeling and drift-mitigation design. This review highlights developments in spray visualization technologies along the “droplet–airflow–target” chain mechanism in UASS spraying. We first outline the physical fundamentals of droplet formation, liquid-sheet breakup, droplet size distribution, and transport mechanisms in rotor-induced flow. Dominant processes are identified across near-field, mid-field, and far-field scales. Next, we summarize major visualization methods. These include optical imaging (PDPA/PDIA, HSI, DIH), laser-based scattering and ranging (LD, LiDAR), and flow-field visualization (PIV). We compare their spatial resolution, measurement range, 3D reconstruction capabilities, and possible sources of error. We then review wind-tunnel trials, field experiments, and point-cloud reconstruction studies. These studies show how downwash flow and tip vortices affect plume structure, canopy disturbance, and deposition patterns. Finally, we discuss emerging intelligent analysis for large-scale monitoring—such as image-based droplet recognition, multimodal data fusion, and data-driven modeling. We outline future directions, including unified feature systems, vortex-coupled models, and embedded closed-loop spray control. This review is a comprehensive reference for advancing UASS analysis, drift assessment, spray optimization, and smart support systems. Full article
(This article belongs to the Special Issue New Trends in Agricultural UAV Application—2nd Edition)
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20 pages, 6671 KB  
Article
A Nanosecond-Scale, High-Spatiotemporal-Resolution, Near-UV–Visible Imaging System for Advanced Optical Diagnostics with Application to Rotating Detonation Engines
by Junhui Ma, Wen Dai, Dongqi Chen, Jingling Hu, Dong Yang, Lingxue Wang, Dezhi Zheng, Yingchen Shi, Haocheng Wen and Bing Wang
Photonics 2025, 12(12), 1233; https://doi.org/10.3390/photonics12121233 - 16 Dec 2025
Cited by 1 | Viewed by 863
Abstract
The combustion diagnostics of rotating detonation engines (RDE) based on excited-state hydroxyl radical (OH*) chemiluminescence imaging is an important method used to characterize combustion flow fields. Overcoming the limitations of imaging devices to achieve nanosecond-scale temporal resolution is crucial for observing the propagation [...] Read more.
The combustion diagnostics of rotating detonation engines (RDE) based on excited-state hydroxyl radical (OH*) chemiluminescence imaging is an important method used to characterize combustion flow fields. Overcoming the limitations of imaging devices to achieve nanosecond-scale temporal resolution is crucial for observing the propagation of high-frequency detonation waves. In this work, a nanosecond-scale imaging system with an ultra-high spatiotemporal resolution was designed and constructed. The system employs four near ultraviolet (NUV)-visible ICMOS, equipped with a high-gain, dual-microchannel plate (MCP) architecture fabricated using a new atomic layer deposition (ALD) process. The system has a maximum electronic gain of 107, a minimum integration time of 3 ns, a minimum interval time 4 ns, and an imaging resolution of 1608 × 1104 pixels. Using this system, high-spatiotemporal-resolution visualization experiments were conducted on RDE, fueled by H2–oxygen-enriched air and NH3–H2–oxygen-enriched air. The results enable the observation of the detonation wave structure, the cellular structure, and the propagation velocity. In combination with optical flow analysis, the images reveal vortex structures embedded within the cellular structure. For NH3-H2 mixed fuel, the results indicate that detonation wave propagation is more unstable than in H2 combustion, with a larger bright gray area covering both the detonation wave and the product region. The experimental results demonstrate that high spatiotemporal OH* imaging enables non-contact, full-field measurements, providing valuable data for elucidating RDE combustion mechanisms, guiding model design, and supporting NH3 combustion applications. Full article
(This article belongs to the Special Issue Optical Measurement Systems, 2nd Edition)
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24 pages, 13828 KB  
Article
Characterization of Iron Oxide Nanoparticles Inside the Myxococcus xanthus Encapsulin
by Harry B. McDowell, Egbert Hoiczyk and Thomas Walther
Nanomaterials 2025, 15(23), 1793; https://doi.org/10.3390/nano15231793 - 28 Nov 2025
Viewed by 1023
Abstract
Encapsulins are microbial protein nanocompartments that spatially organize and sequester specific biochemical processes, including iron storage. While their protein shells have been extensively characterized, the composition and structure of their mineral cores remain less understood. Here, we use bright field transmission electron microscopy [...] Read more.
Encapsulins are microbial protein nanocompartments that spatially organize and sequester specific biochemical processes, including iron storage. While their protein shells have been extensively characterized, the composition and structure of their mineral cores remain less understood. Here, we use bright field transmission electron microscopy (BF TEM), high-angle annular dark-field scanning TEM (HAADF STEM), energy-dispersive X-ray (EDX), and electron energy-loss spectroscopy (EELS) in STEM to characterize the iron-containing mineral granules within the Myxococcus xanthus encapsulin system at near atomic resolution. We find that the internal nanoparticles are smaller (~2 nm) and more numerous (up to ~2200 per encapsulin) than previously reported. These nanoparticles are typically amorphous and have a composition consistent with FePO4 (measured Fe:P ratio of ≈1:1.2). Each encapsulin contains on average ~8500 iron atoms, corresponding to a volumetric density of 2.1 atoms/nm3. Phosphorus incorporation inhibits crystallization, whereas growth in phosphorus-free media leads to the formation of nano-crystalline goethite [α-FeO(OH)]. Full article
(This article belongs to the Section Synthesis, Interfaces and Nanostructures)
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22 pages, 4991 KB  
Review
Meta-Optics for Optical Engineering of Next-Generation AR/VR Near-Eye Displays
by Junoh Lee and Sun-Je Kim
Micromachines 2025, 16(9), 1026; https://doi.org/10.3390/mi16091026 - 7 Sep 2025
Cited by 5 | Viewed by 6681
Abstract
Meta-optics, enabled by metasurfaces consisting of two-dimensional arrays of meta-atoms, offers ultrathin and multi-functional control over the vectorial wavefront of light at subwavelength scales. The unprecedented optical element technology is a promising candidate to overcome key limitations in augmented reality (AR) and virtual [...] Read more.
Meta-optics, enabled by metasurfaces consisting of two-dimensional arrays of meta-atoms, offers ultrathin and multi-functional control over the vectorial wavefront of light at subwavelength scales. The unprecedented optical element technology is a promising candidate to overcome key limitations in augmented reality (AR) and virtual reality (VR) near-eye displays particularly in achieving compact, eyeglass-type form factors with a wide field-of-view, a large eyebox, high resolution, high brightness, and reduced optical aberrations, at the same time. This review highlights key performance bottlenecks of AR/VR displays in the perspective of optical design, with an emphasis on their practical significance for advancing current technologies. We then examine how meta-optical elements are applied to VR and AR systems by introducing and analyzing the major milestone studies. In case of AR systems, particularly, two different categories, free-space and waveguide-based architectures, are introduced. For each category, we summarize studies using metasurfaces as lenses, combiners, or waveguide couplers. While meta-optics enables unprecedented miniaturization and functionality, it also faces several remaining challenges. The authors suggest potential technological directions to address such issues. By surveying recent progress and design strategies, this review provides a comprehensive perspective on the role of meta-optics in advancing the optical engineering of next-generation AR/VR near-eye displays. Full article
(This article belongs to the Special Issue Advances in Nanophotonics: Physics, Materials, and Applications)
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16 pages, 1120 KB  
Article
Simulated Photoabsorption Spectra for Singly and Multiply Charged Ions
by Stephan Fritzsche, Aloka Kumar Sahoo, Lalita Sharma and Stefan Schippers
Atoms 2025, 13(9), 77; https://doi.org/10.3390/atoms13090077 - 3 Sep 2025
Cited by 1 | Viewed by 1322
Abstract
Simulated (or measured) photoabsorption spectra often provide the first indication of how matter interacts with light when irradiated by some radiation source. In addition to the direct, often slowly varying photoabsorption cross-section as a function of the incident photon frequency, such spectra typically [...] Read more.
Simulated (or measured) photoabsorption spectra often provide the first indication of how matter interacts with light when irradiated by some radiation source. In addition to the direct, often slowly varying photoabsorption cross-section as a function of the incident photon frequency, such spectra typically exhibit numerous resonances and edges arising from the interaction of the radiation field with the subvalence or even inner-shell electrons. Broadly speaking, these resonances reflect photoexcitation, with its subsequent fluorescence, or the autoionization of bound electrons. Here, a (relativistic) cascade model is developed for estimating the photoabsorption of (many) atoms and multiply charged ions with a complex shell structure across the periodic table. This model helps distinguish between level- and shell-resolved, as well as total photoabsorption, cross-sections, starting from admixtures of selected initial-level populations. Examples are shown for the photoabsorption of C+ ions near the 1s − 2p excitation threshold and for Xe2+ ions in the photon energy range from 10 to 200 eV. While the accuracy and resolution of the predicted photoabsortion spectra remain limited due to the additive treatment of resonances and because of missing electronic correlations in the representation of the levels involved, the present implementation is suitable for ions with quite different open-shell structures and may support smart surveys of resonances along different isoelectronic sequences. Full article
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46 pages, 7349 KB  
Review
Convergence of Thermistor Materials and Focal Plane Arrays in Uncooled Microbolometers: Trends and Perspectives
by Bo Wang, Xuewei Zhao, Tianyu Dong, Ben Li, Fan Zhang, Jiale Su, Yuhui Ren, Xiangliang Duan, Hongxiao Lin, Yuanhao Miao and Henry H. Radamson
Nanomaterials 2025, 15(17), 1316; https://doi.org/10.3390/nano15171316 - 27 Aug 2025
Cited by 8 | Viewed by 3650
Abstract
Uncooled microbolometers play a pivotal role in infrared detection owing to their compactness, low power consumption, and cost-effectiveness. This review comprehensively summarizes recent progress in thermistor materials and focal plane arrays (FPAs), highlighting improvements in sensitivity and integration. Vanadium oxide (VOx) [...] Read more.
Uncooled microbolometers play a pivotal role in infrared detection owing to their compactness, low power consumption, and cost-effectiveness. This review comprehensively summarizes recent progress in thermistor materials and focal plane arrays (FPAs), highlighting improvements in sensitivity and integration. Vanadium oxide (VOx) remains predominant, with Al-doped films via atomic layer deposition (ALD) achieving a temperature coefficient of resistance (TCR) of −4.2%/K and significant 1/f noise reduction when combined with single-walled carbon nanotubes (SWCNTs). Silicon-based materials, such as phosphorus-doped hydrogenated amorphous silicon (α-Si:H), exhibit a TCR exceeding −5%/K, while titanium oxide (TiOx) attains TCR values up to −7.2%/K through ALD and annealing. Emerging materials including GeSn alloys and semiconducting SWCNT networks show promise, with SWCNTs achieving a TCR of −6.5%/K and noise equivalent power (NEP) as low as 1.2 mW/√Hz. Advances in FPA technology feature pixel pitches reduced to 6 μm enabled by vertical nanotube thermal isolation, alongside the 3D heterogeneous integration of single-crystalline Si-based materials with readout circuits, yielding improved fill factors and responsivity. State-of-the-art VOx-based FPAs demonstrate noise equivalent temperature differences (NETD) below 30 mK and specific detectivity (D*) near 2 × 1010 cm⋅Hz 1/2/W. Future advancements will leverage materials-driven innovation (e.g., GeSn/SWCNT composites) and process optimization (e.g., plasma-enhanced ALD) to enable ultra-high-resolution imaging in both civil and military applications. This review underscores the central role of material innovation and system optimization in propelling microbolometer technology toward ultra-high resolution, high sensitivity, high reliability, and broad applicability. Full article
(This article belongs to the Section Nanoelectronics, Nanosensors and Devices)
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11 pages, 3073 KB  
Article
Observation of Light-Driven CO2 Photoreduction by Fluorescent Protein mRuby
by Jianshu Dong, Jiachong Xie and Qian Cao
Catalysts 2025, 15(6), 535; https://doi.org/10.3390/catal15060535 - 27 May 2025
Cited by 2 | Viewed by 1465
Abstract
As one of the key processes of photosynthesis, carbon fixation and reduction is one of the most important biochemical reactions on planet Earth. Yet, reducing oxidized carbon elements through directly harnessing solar energy by using water-soluble, simple enzymes continues to be challenging. Here, [...] Read more.
As one of the key processes of photosynthesis, carbon fixation and reduction is one of the most important biochemical reactions on planet Earth. Yet, reducing oxidized carbon elements through directly harnessing solar energy by using water-soluble, simple enzymes continues to be challenging. Here, CO2 and bicarbonate were found to be transformed into methanol by fluorescent protein mRuby by using light as the single energy input. The binding of substrates to mRuby chromophore was supported by crystallography and light spectrometry. Gas chromatography showed the generation of methanol in mRuby-bicarbonate aqueous solution upon sunlight illumination. Atomic-resolution serial structures of mRuby showed snapshots of the step-by-step reduction of bicarbonate and CO2. The amino, imino, or carboxylate group of residues near the chromophore was within hydrogen bonding distances of the substrates, respectively. A decrease in fluorescence was observed upon binding of bicarbonate, and the energy liberated from fluorescence was presumably utilized for methanol production. This research represents an exciting example of sunlight-driven photobiocatalysis by water-soluble small proteins. The new, green, and sustainable mechanisms uncovered here indicated great promises to harness solar energy straightforwardly, for, i.e., fuel production and green chemistry. Full article
(This article belongs to the Collection Catalytic Conversion and Utilization of Carbon-Based Energy)
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23 pages, 12531 KB  
Article
Detailed Numerical Simulation of Planar Liquid Sheet Atomization: Instability Dynamics, Ligament Formation, and Self-Destabilization Mechanisms
by Ziting Zhao, Chenglin Zhou, Jianfeng Zou, Jiaqi Sun and Yufeng Yao
Fire 2025, 8(5), 195; https://doi.org/10.3390/fire8050195 - 13 May 2025
Cited by 2 | Viewed by 1703
Abstract
The primary atomization of planar liquid sheets near nozzle exits plays a critical role in the study of pressure-swirl atomizers, yet its intrinsic destabilization and breakup mechanisms remain insufficiently characterized due to the multi-scale nature of gas–liquid interactions, significantly limiting the predictive capacity [...] Read more.
The primary atomization of planar liquid sheets near nozzle exits plays a critical role in the study of pressure-swirl atomizers, yet its intrinsic destabilization and breakup mechanisms remain insufficiently characterized due to the multi-scale nature of gas–liquid interactions, significantly limiting the predictive capacity of current widely adopted atomization models. This study utilizes three-dimensional direct numerical simulations (DNSs) with adaptive mesh refinement and the Volume-of-Fluid (VOF) method to examine the instability and disintegration of a spatially developing planar liquid sheet under operating conditions representative of aero-engine combustors (thickness h=100 μm, We=2544, Re=886). Adaptive grid resolution (minimum cell size 2.5 μm) enables precise resolution of multi-scale interface dynamics while maintaining mass conservation errors below 0.1‱. High-fidelity simulations reveal distinct atomization cascades originating from the jet tip, characterized by liquid sheet roll-up, interface expanding, interface tearing, and ligament/droplet formation. Through extraction and surface characterization of representative shed liquid ligaments, we quantify temporal and spatial variations between ligaments propagating toward and away from the jet core region. Key findings demonstrate that ligament impingement on the liquid core serves as the dominant mechanism for surface wave destabilization, surpassing the influence of initial gas–liquid shear at the nozzle exit. Spectral analysis of upstream surface waves reveals a pronounced correlation between high-wavenumber disturbances and the mean diameter of shed ligaments. These results challenge assumptions in classical atomization models (e.g., LISA) by highlighting self-destabilization mechanisms driven by droplet–ligament interactions. This work provides critical insights for refining engineering atomization models through physics-based ligament diameter prediction criteria. Full article
(This article belongs to the Special Issue Turbulent Spray Combustion: Mechanism Research and Modeling)
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14 pages, 12903 KB  
Article
Biochemical and Structural Characterization of Glyoxylate Reductase/Hydroxypyruvate Reductase from Bacillus subtilis
by Thang Quyet Nguyen, Thai Huu Duong, Jin Kuk Yang and Wonchull Kang
Crystals 2025, 15(4), 298; https://doi.org/10.3390/cryst15040298 - 25 Mar 2025
Cited by 1 | Viewed by 2047
Abstract
D-2-hydroxyacid dehydrogenases (2HADHs) catalyze the reversible reaction of 2-ketocarboxylic acid to the corresponding (R)-2-hydroxycarboxylic acids using NAD(P)H cofactor. As the preference of the cofactor and substrate varies among homologs, biochemical characterization is required to understand this enzyme. Here, we analyzed the biochemical properties [...] Read more.
D-2-hydroxyacid dehydrogenases (2HADHs) catalyze the reversible reaction of 2-ketocarboxylic acid to the corresponding (R)-2-hydroxycarboxylic acids using NAD(P)H cofactor. As the preference of the cofactor and substrate varies among homologs, biochemical characterization is required to understand this enzyme. Here, we analyzed the biochemical properties of Bacillus subtilis glyoxylate reductase/hydroxypyruvate reductase (BsGRHPR), which catalyzes the reduction of both glyoxylate (EC 1.1.1.26) and hydroxypyruvate (EC 1.1.1.81). Enzyme kinetics showed a preference for hydroxypyruvate over glyoxylate, with a seven-fold higher specificity constant. In addition, BsGRHPR displayed a strict preference for NADPH over NADH as a cofactor. The crystal structures of BsGRHPR in complex with formate were determined in the presence and absence of the cofactor at near-atomic resolution. Structural comparisons revealed conformational changes upon cofactor binding and key residues, such as Asp80, R157, R179, R239, Asp263, and Arg296. In addition, substrate-binding analysis highlighted conserved residues, including Val77, Gly78, His287, and S290. Our structures suggest that Glu137, His287, Ser290, and Arg296 serve as gatekeepers at the entrance of the tunnel. This comprehensive characterization of BsGRHPR elucidates its substrate specificity, cofactor preference, and catalytic mechanism, contributing to a broader understanding of GRHPR family enzymes, with potential implications for metabolic engineering applications. Full article
(This article belongs to the Special Issue Crystallography of Enzymes)
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45 pages, 4640 KB  
Review
Structural Virology: The Key Determinants in Development of Antiviral Therapeutics
by Tanuj Handa, Ankita Saha, Aarthi Narayanan, Elsa Ronzier, Pravindra Kumar, Jitin Singla and Shailly Tomar
Viruses 2025, 17(3), 417; https://doi.org/10.3390/v17030417 - 14 Mar 2025
Cited by 8 | Viewed by 7770
Abstract
Structural virology has emerged as the foundation for the development of effective antiviral therapeutics. It is pivotal in providing crucial insights into the three-dimensional frame of viruses and viral proteins at atomic-level or near-atomic-level resolution. Structure-based assessment of viral components, including capsids, envelope [...] Read more.
Structural virology has emerged as the foundation for the development of effective antiviral therapeutics. It is pivotal in providing crucial insights into the three-dimensional frame of viruses and viral proteins at atomic-level or near-atomic-level resolution. Structure-based assessment of viral components, including capsids, envelope proteins, replication machinery, and host interaction interfaces, is instrumental in unraveling the multiplex mechanisms of viral infection, replication, and pathogenesis. The structural elucidation of viral enzymes, including proteases, polymerases, and integrases, has been essential in combating viruses like HIV-1 and HIV-2, SARS-CoV-2, and influenza. Techniques including X-ray crystallography, Nuclear Magnetic Resonance spectroscopy, Cryo-electron Microscopy, and Cryo-electron Tomography have revolutionized the field of virology and significantly aided in the discovery of antiviral therapeutics. The ubiquity of chronic viral infections, along with the emergence and reemergence of new viral threats necessitate the development of novel antiviral strategies and agents, while the extensive structural diversity of viruses and their high mutation rates further underscore the critical need for structural analysis of viral proteins to aid antiviral development. This review highlights the significance of structure-based investigations for bridging the gap between structure and function, thus facilitating the development of effective antiviral therapeutics, vaccines, and antibodies for tackling emerging viral threats. Full article
(This article belongs to the Section Viral Immunology, Vaccines, and Antivirals)
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16 pages, 5313 KB  
Article
The In Situ Structure of T-Series T1 Reveals a Conserved Lambda-Like Tail Tip
by Yuan Chen, Hao Xiao, Junquan Zhou, Zeng Peng, Yuning Peng, Jingdong Song, Jing Zheng and Hongrong Liu
Viruses 2025, 17(3), 351; https://doi.org/10.3390/v17030351 - 28 Feb 2025
Cited by 4 | Viewed by 10989
Abstract
It is estimated that over 60% of known tailed phages are siphophages, which are characterized by a long, flexible, and non-contractile tail. Nevertheless, entire high-resolution structures of siphophages remain scarce. Using cryo-EM, we resolved the structures of T-series siphophage T1, encompassing its head, [...] Read more.
It is estimated that over 60% of known tailed phages are siphophages, which are characterized by a long, flexible, and non-contractile tail. Nevertheless, entire high-resolution structures of siphophages remain scarce. Using cryo-EM, we resolved the structures of T-series siphophage T1, encompassing its head, connector complex, tail tube, and tail tip, at near-atomic resolution. The density maps enabled us to build the atomic models for the majority of T1 proteins. The T1 head comprises 415 copies of the major capsid protein gp47, arranged into an icosahedron with a triangulation number of seven, decorated with 80 homologous trimers and 60 heterotrimers along the threefold and quasi-threefold axes of the icosahedron. The T1 connector complex is composed of two dodecamers (a portal and an adaptor) and two hexamers (a stopper and a tail terminator). The flexible tail tube comprises approximately 34 hexameric rings of tail tube. The extensive disulfide bond network along the successive tail rings may mediate the flexible bending. The distal tip of T1, which is cone-shaped and assembled by proteins gp33, gp34, gp36, gp37, and gp38, displays structural similarity to that of phage lambda. In conjunction with previous studies of lambda-like siphophages, our structure will facilitate further exploration of the structural and mechanistic aspects of lambda-like siphophages. Full article
(This article belongs to the Section Bacterial Viruses)
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13 pages, 807 KB  
Article
High-Resolution Fourier Transform Spectra of Atomic Sulfur: Testing of Modified Quantum Defect Theory
by Vladislav E. Chernov, Nikolai L. Manakov, Alexei V. Meremianin, Alexander V. Naskidashvili, Svatopluk Civiš, Martin Ferus, Petr Kubelík, Ekaterina M. Zanozina and Oxana V. Zetkina
Atoms 2025, 13(2), 16; https://doi.org/10.3390/atoms13020016 - 8 Feb 2025
Viewed by 1586
Abstract
QDT (quantum defect theory) is an effective technique for calculating processes involving highly excited (Rydberg) states of atoms, ions, and molecules with one valence electron outside filled shells, whose spectrum generally resembles a hydrogen-like atom’s spectrum. At the expense of some modification of [...] Read more.
QDT (quantum defect theory) is an effective technique for calculating processes involving highly excited (Rydberg) states of atoms, ions, and molecules with one valence electron outside filled shells, whose spectrum generally resembles a hydrogen-like atom’s spectrum. At the expense of some modification of QDT, in this paper, we extend its applicability to describe low- and intermediate-excited levels of atoms with more complex spectra (on the example of atomic sulfur S I). Transitions between just such states are responsible for the infrared (IR) spectra of atoms. While the quantum defects (QDs) of the highly excited Rydberg levels are determined by the energies of individual levels near the ionization threshold, the radial wave functions of low excited electronic states, in the framework of our modification of QDT, include the QD dependence on energy over a wide energy range; this dependence is determined from the whole spectral series. We show that, outside the atomic core domain, the electron radial functions calculated using modified semi-phenomenological QDT agree well with ab initio calculations. As another assessment of QDT accuracy, we show satisfactory agreement of the probabilities of dipole transitions in S I, taken from the NIST Atomic Spectra Database, with our QDT calculations. We perform an indirect experimental verification of QDT on the basis of spectra of S I in gas-discharge plasma measured by time-resolved high-resolution Fourier transfer spectroscopy (FTS). The Boltzmann plot built from our measured spectra demonstrates that QDT provides a satisfactory approximation for calculating the experimental lines’ intensities. Full article
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