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Targets

Targets is an international, peer-reviewed, open access journal on chemical measurement science, biology, material science, pharmacy, clinical diagnostics, molecular medicine and biomedicine published quarterly online by MDPI.

All Articles (77)

Single-Cell Transcriptomics and Computational Frameworks for Target Discovery in Cancer

  • Martina Tarozzi,
  • Nicolas Riccardo Derus and
  • Gastone Castellani
  • + 2 authors

Single-cell transcriptomics has redefined our understanding of cancer by exposing the complexity of tumor ecosystems and their therapeutic vulnerabilities. scRNA-seq studies have identified lineage hierarchies, immune evasion programs, and resistance-associated states across solid and liquid tumors, informing biomarker development and drug discovery. Advanced computational frameworks integrate these data with longitudinal profiling, RNA velocity, and network diffusion to prioritize targets and predict therapeutic response. Emerging multi-omics approaches further expand the scope of precision oncology by linking genetic alterations, protein-level markers, and spatial context to functional states. This narrative review aims to synthesize current applications of single-cell transcriptomics for target discovery, highlight computational frameworks that translate high-dimensional data into actionable insights, and explore how multi-omics integration is shaping future directions. By bridging molecular complexity with target prioritization, these approaches hold promise for translating single-cell insights into clinically actionable biomarkers and therapeutic strategies for personalized cancer treatment and rational drug development.

3 February 2026

Overview of scRNA-seq analysis pipeline for target discovery. The workflow begins with preprocessing (QC, normalization, dimensionality reduction), followed by the core bioinformatic analysis (clustering, cell type annotation, differential gene expression, functional analysis). Advanced modules such as trajectory inference, RNA velocity, and ligand–receptor interaction mapping provide deeper biological insights. Target nomination occurs after differential expression and pathway/network prioritization, integrating multi-omics evidence to identify druggable candidates.

Comprehensive Roles of ZIP and ZnT Zinc Transporters in Metabolic Inflammation

  • Susmita Barman,
  • Seetur R. Pradeep and
  • Krishnapura Srinivasan

Zinc homeostasis is fundamental to metabolic health, orchestrated by the coordinated actions of two major zinc transporter families: ZIP (Zrt- and Irt-like proteins) and ZnT (zinc transporters). ZIP transporters facilitate zinc influx into the cytosol from the extracellular space or from the lumen of intracellular organelles, whereas ZnT transporters control zinc efflux from the cytosol to the extracellular space or facilitate its sequestration into intracellular vesicles and organelles, concurrently harboring the meticulous intracellular zinc homeostasis. This equilibrium is essential for all critical functions like cellular response, metabolic control, and immune pathway alteration. Disruption of this homeostasis is a driver of different pathological alterations like metabolic inflammation, a chronic low-grade inflammatory state underlying obesity; type 2 diabetes; and nonalcoholic fatty liver disease. Recent studies revealed that ZIP and ZnT transporters dynamically regulate metabolic and inflammatory cues, with their tissue-specific expression varying by tissue and acclimating to different physiological and pathological conditions. Recent advanced research in molecular and genetic understanding has helped to deepen our knowledge of the interplay of activity between ZIP and ZnT transporters and their crosstalk in metabolic tissues, underscoring the potential therapeutic prospect for restoring zinc balance and ameliorating metabolic inflammation. This review provides a comprehensive overview that covers the function, regulation, and interactive crosstalk of ZIP and ZnT zinc transporters in metabolic tissues and their pathological conditions.

27 January 2026

Zinc transporters and signaling pathways in metaflammation. Hyperglycemia, metabolic overload, saturated fatty acids (SFAs), oxidized LDL (OxLDL), and damage-associated molecular patterns (DAMPs) stimulate pattern recognition receptors, including Toll-like receptors (TLRs), inducing metabolic stress in β-cells, hepatocytes, adipocytes, and macrophages. The stress revises the activity and expression of ZIP (influx) and ZnT (efflux) zinc transporters, resulting in transient elevation and redistribution of intracellular labile Zn2+ (“zinc waves”). Modifications in zinc pools, characterized by shifts in intracellular free zinc concentration, act as signaling mechanisms that control immune cell activity and inflammatory responses. Pro-inflammatory cytokines upregulate ZIPs and modulate zinc homeostasis in metabolic and immunological organs, creating a positive feedback loop involving cytokine signaling, TLR activation, zinc transporters, and zinc reservoirs. Metaflammation/persistent low-grade inflammation in metabolic tissues is the foundation for several metabolism-associated diseases, including obesity, insulin resistance, and type 2 diabetes.

The indole scaffold represents a privileged structural motif in medicinal chemistry, celebrated for its remarkable chemical versatility, biological ubiquity, and clinical relevance. This review provides a comprehensive analysis of the recent research on the indole nucleus, emphasizing its physicochemical properties, reactivity patterns, and capacity to interact with a wide array of biological targets. Found in key endogenous compounds such as serotonin and melatonin, indole serves as a cornerstone in neurochemical signaling, circadian regulation, and chrono-metabolic homeostasis. Beyond its physiological roles, synthetic indole derivatives have shown extensive therapeutic potential across diverse domains, including oncology, infectious diseases, neurodegenerative disorders, immunomodulation, and metabolic syndromes. The review explores structure–activity relationships (SAR), pharmacokinetics, and the molecular mechanisms by which indole-based compounds exert their tremendous effects, that are ranging from enzyme inhibition to receptor modulation. Special focus is given to current clinical applications and emerging strategies for enhancing drug specificity, bioavailability, and safety through indolic frameworks. Additionally, we highlight the translational potential of indole-containing molecules in personalized medicine, underscoring opportunities for future drug discovery. By integrating insights from medicinal chemistry, biochemistry, pharmacology, and clinical science, this review affirms the indole ring’s enduring value as a central scaffold in therapeutic innovation.

21 January 2026

Indole scaffold (blue color) and some biologically active derivatives (green color with the indole highlighted in blue) of endogenous and exogenous origin, encompassing tryptophan, serotonin, melatonin, indole-3-propionic acid, and clinically relevant indole alkaloids such as reserpine, vincristine, and vinblastine.

Head and neck cancer (HNC) patients frequently experience alterations in the oral environment following radiotherapy, including xerostomia and impaired mucosal integrity, which may favour fungal overgrowth. This study aimed to characterise oral Candida colonisation in radiotherapy-treated HNC patients and compare it with that of healthy individuals. Unstimulated saliva samples from 61 HNC patients and 100 controls were cultured on chromogenic agar, and isolates were identified using API 20C AUX or MALDI-TOF. Salivary flow was measured to quantify xerostomia. A representative subset of isolates (10 per group) underwent antifungal susceptibility testing by disk diffusion according to CLSI/EUCAST criteria. Candida colonisation was significantly higher in HNC patients than in controls (64.6% vs. 20%, p < 0.001), with greater species diversity and increased detection of non-albicans yeasts, including C. tropicalis, C. parapsilosis, C. glabrata, and C. krusei. All HNC patients exhibited reduced salivary flow. Azole resistance was more frequent among HNC isolates (26%) than among controls (10%), whereas all isolates remained susceptible to amphotericin B and nystatin. These findings indicate that radiotherapy-associated xerostomia substantially alters the oral mycobiota and underscore the importance of routine species-level identification and antifungal susceptibility testing in HNC patients to guide clinical decision-making.

21 January 2026

The mean fungal load of yeast CFU/mL in the healthy controls compared with the HNC group.

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Recent Progress in Bioimaging and Targeted Therapy
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Recent Progress in Bioimaging and Targeted Therapy

Editors: Huangxian Ju, Ying Liu, Huanghao Yang, Zong Dai

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Targets - ISSN 2813-3137