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Redefining Aquaculture Safety with Artificial Intelligence: Design Innovations, Trends, and Future Perspectives
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Exploring Nationwide Oyster Aquaculture Data: An Index to Compare Regulatory, Production, and Economic Attributes of Oyster Aquaculture Among U.S. States and Regions
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Human Trophic Level and Trade Openness: Insights from Global Seafood Consumption Patterns
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Evidence for a Greater Pleistocene Distribution for the Copper Redhorse in North America (Catostomidae: Moxostoma hubbsi)
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Fungal Protein from Non-Food Bioresources in Diets for Rainbow Trout (Oncorhynchus mykiss)
Journal Description
Fishes
Fishes
is an international, peer-reviewed, scientific, open access journal published monthly online by MDPI. It covers fishes and aquatic animals research. The Iberian Society of Ichthyology (SIBIC) and the Brazilian Society of Aquaculture and Aquatic Biology (Aquabio) are affiliated with Fishes and their members receive a discount on the article processing charges.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubAg, FSTA, and other databases.
- Journal Rank: JCR - Q2 (Marine and Freshwater Biology)
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 17.4 days after submission; acceptance to publication is undertaken in 2.6 days (median values for papers published in this journal in the second half of 2024).
- Recognition of Reviewers: reviewers who provide timely, thorough peer-review reports receive vouchers entitling them to a discount on the APC of their next publication in any MDPI journal, in appreciation of the work done.
- Testimonials: See what our editors and authors say about Fishes.
- Companion Journal: Aquaculture Journal
Impact Factor:
2.1 (2023);
5-Year Impact Factor:
2.4 (2023)
Latest Articles
Dietary Incorporation of Natural and Synthetic Reproductive Inhibitors: Exploring Their Impact on Sex Characteristics in Cyprinus carpio (Common Carp)
Fishes 2025, 10(6), 284; https://doi.org/10.3390/fishes10060284 (registering DOI) - 9 Jun 2025
Abstract
The present study was designed to evaluate the effect of supplementation with papaya seeds (PSM), fish testes powder (FTP), and 17α-methyltestosterone (MT) on the reproductive parameters, growth performance, digestive enzymes, and histology of Cyprinus carpio. In the present study, fries (2–3 days
[...] Read more.
The present study was designed to evaluate the effect of supplementation with papaya seeds (PSM), fish testes powder (FTP), and 17α-methyltestosterone (MT) on the reproductive parameters, growth performance, digestive enzymes, and histology of Cyprinus carpio. In the present study, fries (2–3 days old) were acclimatized for 2 days and then equally distributed into one control and six treatment groups and fed with one control and six experimental diets for 30 days, followed by a control diet for 60 days in each group with triplicates. These diets included control (T0), different levels of 17α-methyltestosterone (T1: 60 mg/kg; T2: 70 mg/kg), papaya seed powder (T3: 6 g/kg; T4: 7 g/kg), and fish (tilapia) testes powder (T5: 70%; T6: 80%). The treatment groups receiving papaya seed meal (PSM) showed significant improvements in growth performance, with a significant increase in final body weight. The best zootechnical performances (PER, SGR, and CF) were observed in fish fed with papaya seed compared to the control group. Reproductive analysis showed significant variations between treatment groups, with a large number of female C. carpio observed in the control group. Fish treated with T4 increased the sex percentage in favor of male fish by achieving 90% male phenotype followed by T6 with 88% male. Diets based on papaya seeds and fish testes powder significantly reduced the reproductive performance by reducing GSI, which affected the gonadal histology. The results revealed a visible effect of 17 α-MT and PSM feeding on the gonad structure. There were significant elevations in protease enzyme activity in T6 compared to the control (p < 0.05), and the highest amylase activity was observed in T3. Natural resources are not only more cost-effective but also environmentally friendly and readily available; they are a superior choice over synthetic alternatives for controlling the prolific breeding of C. carpio.
Full article
(This article belongs to the Section Sustainable Aquaculture)
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Open AccessArticle
Fecundity Study and Histological Analysis of the Gonads of the Sea Cucumber Holothuria tubulosa (Echinodermata: Holothuroidea) in the Central Aegean Sea, Greece: Insights into Reproductive Biology
by
Athina Balatsou, Chrysoula Apostologamvrou and Dimitris Vafidis
Fishes 2025, 10(6), 283; https://doi.org/10.3390/fishes10060283 (registering DOI) - 8 Jun 2025
Abstract
The Atlanto-Mediterranean sea cucumber Holothuria tubulosa is a species of great ecological and commercial importance, making it a primary target for collection in the Mediterranean region. This study investigated the reproductive biology of H. tubulosa (Gmelin, 1793) in a coastal area of the
[...] Read more.
The Atlanto-Mediterranean sea cucumber Holothuria tubulosa is a species of great ecological and commercial importance, making it a primary target for collection in the Mediterranean region. This study investigated the reproductive biology of H. tubulosa (Gmelin, 1793) in a coastal area of the Central Aegean Sea (Eastern Mediterranean) over a one-year period, from June 2021 to May 2022. Monthly sampling was conducted via dives at depths up to 10 m, alongside the recording of environmental and biometric data. Histological analysis revealed a synchronous annual reproductive cycle, with gonadal maturation beginning in April and peak sexual maturity observed in July and August, followed by a single spawning event from August to September. The sex ratio was 1:1.31 (male: female), and the size at first maturity was 255.3 mm. These findings provide essential insights into the reproductive physiology of H. tubulosa and further contribute to the development of sustainable stock management strategies for sea cucumbers in the Hellenic Seas.
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(This article belongs to the Section Biology and Ecology)
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Open AccessArticle
Effect of the Inclusion of Natural Pigments on the Performance and Gene Expression of Immune Response and Oxidative Stress of Oreochromis niloticus Cultured in a Biofloc System
by
Andres Elias Castro-Castellon, Maria del Carmen Monroy-Dosta, Aida Hamdan-Partida, Martha Patricia Hernandez-Vergara, Jorge Castro-Mejía, German Castro-Mejia, Arnulfo Misael Martinez-Meingüer and José Antonio Mata-Sotres
Fishes 2025, 10(6), 282; https://doi.org/10.3390/fishes10060282 (registering DOI) - 8 Jun 2025
Abstract
Tilapia (Oreochromis niloticus) is one of the most important species in aquaculture, so the optimization of its culture by using sustainable strategies is fundamental. The aim of this study was to evaluate the effects of incorporating natural pigments (carrot and beetroot
[...] Read more.
Tilapia (Oreochromis niloticus) is one of the most important species in aquaculture, so the optimization of its culture by using sustainable strategies is fundamental. The aim of this study was to evaluate the effects of incorporating natural pigments (carrot and beetroot meal) as carbon sources in a biofloc system on the growth, immune response, and oxidative stress of O. niloticus. The experiment comprised four treatments: clear water as control (CT), biofloc with molasses (TBM), biofloc with carrot meal (TBC), and biofloc with beetroot meal (TBB). Results showed that biofloc helped to maintain optimal water quality and high survival rates, but specifically, TBC treatment achieved the highest growth rates and feed conversion ratio, along with elevated leukocyte counts, indicating improved health and immunity. Gene expression analysis revealed enhanced antioxidant activity (sod, gpx) and modulated immune responses (tnf-α, il-1β), particularly under thermal stress. Carrot meal emerged as an effective carbon source in biofloc systems, promoting growth, immune resilience, and oxidative stress resistance in tilapia, while beetroot meal improved pigmentation. These findings highlight the potential of natural pigments to enhance aquaculture sustainability and productivity.
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(This article belongs to the Special Issue Fish Hematology)
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Open AccessArticle
Richness and Distribution of Mexican Pacific Cephalopods (Mollusca, Cephalopoda)
by
Brian Urbano and Denise Arroyo-Lambaer
Fishes 2025, 10(6), 281; https://doi.org/10.3390/fishes10060281 (registering DOI) - 7 Jun 2025
Abstract
Cephalopods have been widely studied around the globe. However, some areas are poorly understood. In Mexico, there is a significant lack of knowledge, particularly in the coastal zone of the eastern Pacific Ocean, where most studies have focused on commercial fisheries. An exhaustive
[...] Read more.
Cephalopods have been widely studied around the globe. However, some areas are poorly understood. In Mexico, there is a significant lack of knowledge, particularly in the coastal zone of the eastern Pacific Ocean, where most studies have focused on commercial fisheries. An exhaustive review of documents (articles, books, theses, and regional reports) dealing with the cephalopods of the eastern Pacific in general and of Pacific Mexico in particular was undertaken along with an examination of malacological collections and databases available in Mexico and the USA. As a result, we obtained 3752 records corresponding to 3339 taxonomic records, featuring two superorders, six orders, 29 families, 60 genera, and 105 species. Of these, 89 species occurring in Mexican waters were confirmed, 76% pelagic, 21% in strictly benthic habitats, 2% benthopelagic, and 1% corresponding to demersal species. We proposed a modification for the distribution of 21 species and found 10 new records for Mexican waters.
Full article
(This article belongs to the Section Taxonomy, Evolution, and Biogeography)
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Open AccessArticle
Quinolone Resistance and Prevalence of the Related Genes in Photobacterium damselae subsp. damselae Recovered from Diseased Fish in Eastern China
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Xiangyun Yang, Chen Shen, Suming Zhou, Liyun Jin, Yajun Wang and Fei Yin
Fishes 2025, 10(6), 280; https://doi.org/10.3390/fishes10060280 (registering DOI) - 7 Jun 2025
Abstract
Photobacterium damselae subsp. damselae is a well-recognized marine animal pathogen. Herein, 70 P. damselae subsp. damselae isolates were investigated for quinolone susceptibility and prevalence of the genes including quinolone resistance-determining regions (QRDRs) and plasmid-mediated quinolone resistance (PMQR) genes. A total of 18/70 isolates
[...] Read more.
Photobacterium damselae subsp. damselae is a well-recognized marine animal pathogen. Herein, 70 P. damselae subsp. damselae isolates were investigated for quinolone susceptibility and prevalence of the genes including quinolone resistance-determining regions (QRDRs) and plasmid-mediated quinolone resistance (PMQR) genes. A total of 18/70 isolates exhibited high-level resistance, and 23/70 isolates exhibited moderate resistance according to the MIC values. QRDR analysis showed that double mutants in both GyrA (Ser83Ile) and ParC (6/17 Ser80Phe or 11/17 Ser80Tyr) were detected in 94.4% (17/18) high-level quinolone resistance P. damselae subsp. damselae strains. PMQR detection showed that 60.0% (42/70) carried at least one PMQR (1/42 qnrB coexistence with aac(6′)-Ib-cr, 1/42 qnrS coexistence with aac(6′)-Ib-cr, 44/46 qnrS). QnrA, QnrC, qnrD and qepA were not detected in all strains. Among the 42 PMQR-positive strains, 24 showed fluoroquinolones MICs ≤ 0.5 mg/L and 13 MICs ≥ 2 mg/L, all carrying QRDR mutations. For the twenty-eight non-PMQR strains, twenty-three showed fluoroquinolone MICs ≤ 0.5 mg/L without QRDR mutations, and five MICs ≥ 2 mg/L carrying QRDR mutations. In conclusion, qnrS (qnrS2 allele) is the major PMQR widespread in P. damselae subsp. damselae isolated from eastern China; however, QRDR mutation plays a marked role in mediating fluoroquinolone resistance.
Full article
(This article belongs to the Section Fish Pathology and Parasitology)
Open AccessArticle
Assessing Fish Diversity in the Chishui River Using Environmental DNA (eDNA) Metabarcoding
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Jing Gao, Jing Zhang, Chengrong Pan, Sheng Xu, Yajie Wu, Wei Lv, Min Hong, Yuxin Hu and Yingru Wang
Fishes 2025, 10(6), 279; https://doi.org/10.3390/fishes10060279 (registering DOI) - 7 Jun 2025
Abstract
Since 2017, a fishing ban in the Chishui River (China) has reduced human disturbances, yet the early-stage recovery of fish resources remains unquantified. Here, we applied environmental DNA (eDNA) metabarcoding to assess fish diversity and restoration status across its upper, middle, and lower
[...] Read more.
Since 2017, a fishing ban in the Chishui River (China) has reduced human disturbances, yet the early-stage recovery of fish resources remains unquantified. Here, we applied environmental DNA (eDNA) metabarcoding to assess fish diversity and restoration status across its upper, middle, and lower reaches. An analysis of operational taxonomic units (OTUs) revealed higher unique than shared OTUs among reaches, indicating significant spatial partitioning of fish communities. The upper reaches exhibited the highest diversity due to reduced human activity, attributed to greater species richness, while the middle and lower reaches showed similar community structures. Key findings include the following: (1) the detection of rare endemic species (Schizothorax) and non-native Oreochromis DNA, suggesting invasion risks; (2) the investigation revealed a predominance of small-bodied fish species, indicating that large-bodied fish populations in the Chishui River (China) remained relatively scarce; (3) the recovery of demersal fish DNA from surface waters, confirming eDNA’s broad detection capacity. The results indicate that the fishing ban has contributed to the partial recovery of the fish community in the Chishui River (China). However, risks of biological invasion (e.g., Oreochromis species) remain, and large-bodied fish are still relatively scarce. To ensure effective conservation, it is critical to strengthen the monitoring and evaluation of the fishing ban’s effectiveness and implement timely measures to prevent invasive species proliferation.
Full article
(This article belongs to the Section Genetics and Biotechnology)
Open AccessArticle
Morphometric, Nutritional, and Blood Analyses in Hybrid Striped Bass (Morone chrysops x Morone saxatilis, Walbaum 1972) Reared in a Recirculating Aquaculture System (RAS) Implant in Sicily, Italy
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Francesca Aragona, Syed Sikandar Habib, Francesco Fazio, Alessandro Zumbo, Antonino Costa, Kristian Riolo, Alessia Giannetto and Vincenzo Parrino
Fishes 2025, 10(6), 278; https://doi.org/10.3390/fishes10060278 - 6 Jun 2025
Abstract
Hybrid striped bass (HSB), a cross between white bass (Morone chrysops) and striped bass (Morone saxatilis), has garnered attention in aquaculture due to its adaptability, rapid growth, and high market value. This study investigates the morphometric, nutritional, and blood
[...] Read more.
Hybrid striped bass (HSB), a cross between white bass (Morone chrysops) and striped bass (Morone saxatilis), has garnered attention in aquaculture due to its adaptability, rapid growth, and high market value. This study investigates the morphometric, nutritional, and blood characteristics of HSB reared in a recirculating aquaculture system (RAS) in Sicily, Italy, over a 22-month grow-out period. The fish were managed under standardized feeding and water quality protocols, with weekly monitoring of the physicochemical parameters. A total of 21 clinically healthy fish, averaging 571.33 ± 129.32 in body weight, were randomly sampled in the spring season from a commercial RAS facility equipped with biological filtration, UV sterilization, and seasonally regulated water parameters. The results revealed strong positive correlations between the morphometric parameters and blood indices, such as red blood cell (RBC) count, hemoglobin (Hb) levels, and hematocrit (Hct), highlighting their importance as health indicators. The proximate composition revealed an average moisture content of 75.55 ± 1.49, crude protein at 20.29 ± 0.26, total lipid at 4.25 ± 0.97, and ash content at 1.69 ± 0.17. Additionally, statistical analyses, including a principal component analysis (PCA), identified relationships between body size, nutritional content, and blood parameters, emphasizing the role of body size in influencing nutritional and health outcomes. The findings of this study are crucial for optimizing farming protocols and improving the health and productivity of HSB in RAS under Mediterranean conditions.
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(This article belongs to the Special Issue Fish Hematology)
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Open AccessArticle
Effects of Dietary ARA/EPA Ratio on Growth Performance, Antioxidant Capacity and Lipid Metabolism-Related Genes of Juvenile Fat Greenling (Hexagrammos otakii)
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Fengzhi Lu, Yafeng Guo, Dandan Cui, Wenyuan Hua, Shuai Wang, Lei Peng, Yan Chen, Jian Han and Wei Wang
Fishes 2025, 10(6), 277; https://doi.org/10.3390/fishes10060277 - 6 Jun 2025
Abstract
Essential fatty acids are extremely important nutrients in the diet of fish, and the balance between arachidonic acid (ARA) and eicosapentaenoic acid (EPA) is crucial for the healthy growth of fish. Six isonitrogenous and isolipidic basal diets were given to 540 juvenile fat
[...] Read more.
Essential fatty acids are extremely important nutrients in the diet of fish, and the balance between arachidonic acid (ARA) and eicosapentaenoic acid (EPA) is crucial for the healthy growth of fish. Six isonitrogenous and isolipidic basal diets were given to 540 juvenile fat greenling (Hexagrammos otakii) (31.4 ± 1.5 g) for 8 weeks to investigate the effects of dietary ARA/EPA ratio on growth performance, antioxidant capacity and lipid metabolism-related genes of juvenile H. otakii. The control group (A) had 7% fish oil added as the main fat source, while the experimental groups had 4% fish oil as the basic fat source, with varying proportions of ARA and EPA concentrates added to formulate five diets with varying ARA/EPA ratios (B 2.66; C 1.34; D 1.01; E 0.47; F 0.19). The experimental results revealed that adding ARA and EPA to the diet increased the percent weight gain (PWG) and feed conversion ratio (FCR) of juvenile H. otakii, and the PWG and FCR were greatest under Group E dietary conditions. The specific activities (U/mg protein) of superoxide dismutase (SOD), catalase (CAT), and total antioxidant capacity (T-AOC) in the liver, as well as serum SOD and CAT were significantly higher in Groups D and E than those in other groups (p < 0.05). Malondialdehyde (MDA, nmol/g protein) content in the liver and serum was significantly lower in Group E than that in other groups (p < 0.05). Moreover, groups D and E exhibited significant increases in the specific activities (U/mg protein) of intestinal trypsin, lipase, and amylase, as well as in the intestinal villus length (p < 0.05). The incorporation of ARA and EPA into the feed reduced the expression levels of fat synthesis genes such as fas, scd1, accα, and srebp1, as well as the expression of lipolysis genes atgl and hsl. However, it also increased the expression of the lipolytic genes cpt1 and ppara. The ARA/EPA ratios in the dietary were 0.47 and 1.01, respectively, which are appropriate for enhancing growth efficiency, antioxidant enzyme activity, intestinal digestive enzyme activity and lipid metabolism regulation.
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(This article belongs to the Section Nutrition and Feeding)
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Catch Losses and Reduction of Bycatch for Jellyfish Using Marine Mammal Bycatch Reduction Devices in Midwater Trawl Gear
by
Jung-Mo Jung, Hyun-Young Kim, Bong-Jin Cha, Sung-Jae Kim, Tae-Suk Kim, Gyeong-Cheol Hyun and Kyu-Suk Choi
Fishes 2025, 10(6), 276; https://doi.org/10.3390/fishes10060276 - 6 Jun 2025
Abstract
The National Institute of Fisheries Science in Korea is developing marine mammal bycatch reduction devices (BRDs) for midwater trawl gear. In this study, we tested two BRD-type guide nets (inclined net panel) with 30° and 45° tilt angles to prevent marine mammals from
[...] Read more.
The National Institute of Fisheries Science in Korea is developing marine mammal bycatch reduction devices (BRDs) for midwater trawl gear. In this study, we tested two BRD-type guide nets (inclined net panel) with 30° and 45° tilt angles to prevent marine mammals from reaching the codend and facilitating their escape from the net. Fishing operations were conducted along the east and south coasts of South Korea, and cameras were installed in front of the BRDs to monitor their performance. The catch loss of herring with the 30° guide net was 13% and 11% in number and weight. The catch loss of hairtail was 53% and 51% in number and weight with the 30° guide net. Mackerel showed a 97% catch loss in number and weight with the 45° guide net. The 30° guide net resulted in lower catch loss for rudderfish and jack mackerel compared to the 45° guide net. The jellyfish discard rate of the BRD was 5% and 7% in number and weight with the 30° guide net and 12% and 11% with the 45° guide net, indicating that the 30° guide net was more effective at discarding jellyfish. Mesh selectivity was not strongly related to target species body length.
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(This article belongs to the Special Issue Sustainable Fisheries Dynamics)
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Mercury and Selenium Trophic Transfer in the Mexican California Current Ecosystem Using a Top Predator as a Model
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Maria Emilia Rechimont, Felipe Amezcua, Jorge Ricardo Ruelas-Inzunza, Roberto Cruz-Garcìa, Juan Roberto Felipe Vallarta-Zárate and Felipe Amezcua-Linares
Fishes 2025, 10(6), 275; https://doi.org/10.3390/fishes10060275 - 5 Jun 2025
Abstract
Research on the trophic transfer of trace elements in food chains, particularly toxic elements like mercury (Hg) and essential elements like selenium (Se), is crucial for understanding their impact on human health. In this work, we assessed the transfer of Hg and Se
[...] Read more.
Research on the trophic transfer of trace elements in food chains, particularly toxic elements like mercury (Hg) and essential elements like selenium (Se), is crucial for understanding their impact on human health. In this work, we assessed the transfer of Hg and Se in the blue shark (Prionace glauca), a top predator with economic importance. Muscle samples from sharks, as well as their main prey (squid, red shrimp, sardine, and mackerel), were analyzed for Hg and Se concentrations. The Hg levels of sharks were below the recommended legal limit for seafood consumption in Mexico (1 µg·g−1 ww), while Se levels were significantly lower than previously reported for the species. Biomagnification was evaluated in this species by calculating biomagnification factors (BMF) for Hg and Se based on predator-prey element concentrations. Hg showed a BMF of 2.8, indicating biomagnification, while Se had a BMF of 0.2, suggesting biodilution. Trophic transfer factor models supported these findings, showing a positive correlation of Hg concentration with trophic level and a negative correlation with Se. However, while a hazard quotient under one does not pose a risk for consumption, a Se:Hg molar ratio under one estimated in the muscle tissue indicates that Hg levels along this food web should be approached with caution.
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(This article belongs to the Section Environment and Climate Change)
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A Hydroacoustic Assessment of the Density, Size, and Biomass of Fish in a Freshwater Reservoir After Non-Classical Biomanipulation
by
Aihuan Guo, Qingping Lian, Pengcheng Sheng, Aiju Zhang, Julin Yuan and Kohji Iida
Fishes 2025, 10(6), 274; https://doi.org/10.3390/fishes10060274 - 5 Jun 2025
Abstract
Monitoring changes in fishery resources, such as the density and growth of fish, following large-scale fish stocking in a reservoir is important. In this study, BioSonics DT-X (201 kHz) was used to assess the seasonal changes in the density, size distribution, and biomass
[...] Read more.
Monitoring changes in fishery resources, such as the density and growth of fish, following large-scale fish stocking in a reservoir is important. In this study, BioSonics DT-X (201 kHz) was used to assess the seasonal changes in the density, size distribution, and biomass of fish in Duihekou Reservoir, Zhejiang province, China, in 2020. The fish density was significantly lower in spring (3.33 ind./1000 m3) than in summer (75.24 ind./1000 m3), autumn (56.22 ind./1000 m3), and winter (20.37 ind./1000 m3) (p < 0.01). No significant difference in fish density was apparent between summer and autumn. Additionally, the average target strength (TS) values in spring (−41.05 dB) were significantly higher than in summer (−44.66 dB) and autumn (−45.55 dB) (p < 0.01), but significantly higher in winter (−38.12 dB) than in the other seasons (p < 0.01); no significant difference was observed between the summer and autumn values (p > 0.01). The fish biomass in winter (14.3 g/m3) was 13 times that in spring (1.1 g/m3). These results indicate that large-scale fish stocking can effectively adapt to reservoir habitats to achieve growth. The catch composition revealed silver carp (Hypophthalmichthys molitrix) and bighead carp (Aristichthys nobilis) to be dominant species, mostly comprising young individuals. Stock enhancement plays a critical role in reshaping the fishery population structure in a reservoir. These findings enhance our understanding of fishery resource changes in reservoirs after non-classical biomanipulation and demonstrate how hydroacoustic techniques can be successfully used to quantify the density and size distribution of fish for more effective fishery management.
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(This article belongs to the Section Fishery Economics, Policy, and Management)
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Modelling the Spatial Distribution of Dosidicus gigas in the Southeast Pacific Ocean at Multiple Temporal Scales Based on Deep Learning
by
Mingyang Xie, Bin Liu, Xinjun Chen, Wei Yu, Jintao Wang and Jiawen Xu
Fishes 2025, 10(6), 273; https://doi.org/10.3390/fishes10060273 - 5 Jun 2025
Abstract
With the advent of the big data era in ocean remote sensing and fisheries, there is a growing demand for finer temporal scales to predict spatial distribution of the jumbo flying squid (Dosidicus gigas). This can help reduce fuel costs and
[...] Read more.
With the advent of the big data era in ocean remote sensing and fisheries, there is a growing demand for finer temporal scales to predict spatial distribution of the jumbo flying squid (Dosidicus gigas). This can help reduce fuel costs and provide higher quality and faster decision-making. Therefore, this study employed a deep neural network (DNN) model, using sea surface temperature, sea surface height, sea surface salinity, and photosynthetically active radiation as input factors, with catch per unit effort as the output factor. We construct five cases with temporal scales of 3, 6, 10, 15, and 30 days using data spanning 10 years (2012–2021). Additionally, the performance of DNN was compared with those of traditional methods such as generalized additive model (GAM), extreme gradient boosting (XGBoost), and artificial neural network (ANN). The results demonstrated that the DNN model had the best performance. As the temporal scale decreased, the mean squared error and the mean absolute error increased, whereas the area under the precision−recall curve decreased, indicating a decline in model performance. The interpretability analysis indicated that spatial and temporal factors significantly contributed to the model, with longitude exhibiting the highest contribution. To improve the accuracy of finer temporal scales, future research should focus on reducing noise in the data and address the presence-only nature of fishery data, particularly by cleaning the unsampled portions.
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(This article belongs to the Section Fishery Facilities, Equipment, and Information Technology)
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Fish Fauna, Ecological Quality and Conservation Challenges in the Balkan Transboundary Lake Dojran
by
Spase Shumka, Olga Petriki, Laura Shumka and Enkeleda Berberi
Fishes 2025, 10(6), 272; https://doi.org/10.3390/fishes10060272 - 4 Jun 2025
Abstract
The European Water Framework Directive (WFD) 2000/60/EC emphasizes the use of fish communities as key indicators for assessing the ecological quality of freshwater ecosystems. Despite over two decades of WFD implementation, many Balkan countries lack standardized ecological assessment indices, particularly for fish fauna.
[...] Read more.
The European Water Framework Directive (WFD) 2000/60/EC emphasizes the use of fish communities as key indicators for assessing the ecological quality of freshwater ecosystems. Despite over two decades of WFD implementation, many Balkan countries lack standardized ecological assessment indices, particularly for fish fauna. This situation complicates efforts to monitor and manage aquatic ecosystems, especially transboundary waters facing significant environmental pressures. In this context, our study assesses fish communities and ecological quality in Lake Dojran, a transboundary lake shared by Greece and North Macedonia. Fish sampling was independently conducted by each country (North Macedonia in 2021 and Greece in 2023), using benthic multi-mesh gillnets following standardized European methodologies (CEN 2005). A total of 12 out of 16 historically recorded fish species were confirmed. Higher catch per unit effort (CPUE) values were observed in 2021 (282.50 specimens/gillnet, biomass 6321.81 g/gillnet) compared to 2023 (207.83 specimens/gillnet, 2378.67 g/gillnet). Dominant species included Alburnus macedonicus and Perca fluviatilis. No significant differences were found in CPUE values based on either number of specimens (NPUE) or biomass (BPUE) across the different depth zones. Using the Greek Lake Fish Index (GLFI), ecological quality based on fish fauna was classified as “good” in 2021 and “high” in 2023, reflecting the low relative contribution of both introduced numerical abundance and omnivorous species biomass in total catches. This study contributes valuable baseline data for transboundary ecological management and conservation strategies, supporting efforts aligned with WFD objectives.
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(This article belongs to the Section Biology and Ecology)
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Open AccessArticle
Improving Aquaculture Worker Safety: A Data-Driven FTA Approach with Policy Implications
by
Su-Hyung Kim, Seung-Hyun Lee, Kyung-Jin Ryu and Yoo-Won Lee
Fishes 2025, 10(6), 271; https://doi.org/10.3390/fishes10060271 - 4 Jun 2025
Abstract
Worker safety has been relatively overlooked in the rapidly growing aquaculture industry. To address this gap, industrial accident compensation insurance data—mainly from floating cage and seaweed farming—were analyzed to quantify accident types and frequencies, with a focus on human elements as root causes.
[...] Read more.
Worker safety has been relatively overlooked in the rapidly growing aquaculture industry. To address this gap, industrial accident compensation insurance data—mainly from floating cage and seaweed farming—were analyzed to quantify accident types and frequencies, with a focus on human elements as root causes. Basic causes were selected based on IMO Resolution A/Res.884 and assessed through a worker awareness survey. Fault Tree Analysis (FTA), a Formal Safety Assessment technique, was applied to evaluate risks associated with these causes. The analysis identified organization at the farm site (23.3%), facility and equipment factors (22.8%), and people factors (21.4%) as the primary causes. Among secondary causes, personal negligence (13.2%), aging gear and poor maintenance (11.4%), and insufficient risk training (10.4%) were the most significant. Selective removal of these causes reduced the probability of human element-related accidents from 64.6% to 48.6%. While limited in scope to Korean data and self-reported surveys, the study demonstrates the value of combining quantitative data with worker perspectives. It provides foundational data for developing tailored safety strategies and institutional improvements—such as standardized procedures, multilingual education, and inclusive risk management—for sustainable safety in aquaculture.
Full article
(This article belongs to the Special Issue Safety Management in Fish Farming: Challenges and Further Trends)
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Research on Carbon Sink Effect of Marine Shellfish and Algae in China
by
Peng Zheng, Tianrang Chu, Wei Zhao and Yongquan Liu
Fishes 2025, 10(6), 270; https://doi.org/10.3390/fishes10060270 - 4 Jun 2025
Abstract
Global warming has increasingly become a widespread concern of the international community, and one of the key approaches to achieving carbon neutrality goals lies in the carbon sequestration capacity of oceans. Therefore, scientifically and accurately measuring the carbon sink capacity of marine fisheries
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Global warming has increasingly become a widespread concern of the international community, and one of the key approaches to achieving carbon neutrality goals lies in the carbon sequestration capacity of oceans. Therefore, scientifically and accurately measuring the carbon sink capacity of marine fisheries and studying its spatial effects are particularly crucial for mitigating global climate change. Marine fisheries encompass categories such as fish, shellfish, algae, and crustaceans. Given that marine fisheries-based carbon sinks are non-feed fisheries, with cultivated shellfish and algae being highly representative, this paper primarily focuses on the carbon sink capacity of shellfish and algae as the main assessment criteria for marine fisheries carbon sinks, aiming to apply this research to other countries worldwide to assist in addressing global warming. Thus, based on panel data of shellfish and algae cultivation in nine coastal provinces of China from 2007 to 2021, this paper employs the “removable carbon sink” model to calculate the carbon sink capacity of Chinese marine shellfish and algae aquaculture industry and utilizes the spatial Durbin model to analyze its spatial effects. The research findings are as follows: (1) The spatial distribution of carbon sink capacity in China’s marine shellfish and algae is uneven. (2) Moran’s Index indicates that the carbon sink capacity of marine shellfish and algae exhibits positive spatial correlation, but the degree of spatial agglomeration is unstable. Fujian Province has the highest average carbon sink capacity at 446,451.21 tons, while regions such as Hainan, Hebei, and Jiangsu have relatively lower average carbon sink capacities, with Hainan Province’s being only 3627.57 tons, sufficiently demonstrating the characteristic of uneven spatial distribution. (3) Through decomposition using the spatial Durbin model, it is found that the direct effects of marine shellfish and algae aquaculture production, technological input, technological promotion, and fishery disaster situations are positive, with the result for marine shellfish and algae aquaculture production being 1.617, significantly positive at the 1% level. The result for labor input is −0.847, with a negative direct effect. From the perspective of indirect effects, the indirect effects of marine shellfish and algae aquaculture production, technological input, and technological promotion are positive, with aquaculture production at 1.185, still significantly positive at the 1% level. The result for labor input is −2.140, with a negative indirect effect. These research conclusions provide important references for the formulation of global marine carbon sink-related policies, helping countries optimize resource allocation, strengthen regional collaboration, and increase investment in science and technology. Consequently, they can promote the sustainable development of marine shellfish and algae aquaculture industries, and contribute to enhancing marine carbon sink capacity and achieving global carbon neutrality goals.
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(This article belongs to the Special Issue Fisheries Monitoring and Management)
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Open AccessArticle
Influence of Eucommia ulmoides Extract on the Growth, Glucose Metabolism, and Antioxidant Capacity of Largemouth Bass (Micropterus salmoides)
by
Shengqi Zhao, Dongyu Huang, Mingchun Ren, Jiaze Gu and Hualiang Liang
Fishes 2025, 10(6), 269; https://doi.org/10.3390/fishes10060269 - 3 Jun 2025
Abstract
This study aimed to evaluate the impact of Eucommia ulmoides extract (EE) supplementation on the expression of genes related to glucose metabolism and antioxidant capacity of M. salmoides in response to different starch levels. In order to evaluate the effect of EE on
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This study aimed to evaluate the impact of Eucommia ulmoides extract (EE) supplementation on the expression of genes related to glucose metabolism and antioxidant capacity of M. salmoides in response to different starch levels. In order to evaluate the effect of EE on fish metabolism and especially to enhance the metabolism of M. salmoides towards glucose metabolism, especially in high and low starch formulations, we designed six experimental feed groups: PC (high-starch control), NC (low-starch control), and four groups supplemented with EE on the basis of PC, with EE concentrations of 0.05%, 0.10%, 0.15%, and 0.20%, respectively. Each feed was administered to fish with an average weight of 36.98 ± 0.08 g, which were cultured for seven weeks, and the water temperature was 31–33 °C. The results demonstrated that increasing the EE concentration in the feed significantly influenced fish growth without affecting the body composition. Regarding the antioxidant activity, the highest CAT (catalase) enzyme activity in the intestine was recorded in the 0.15% EE group. Additionally, the mRNA expression of the antioxidant gene keap1 (kelch-like ECH-associated protein1) increased with higher EE supplementation, and sod (superoxide dismutase) mRNA expression was significantly elevated in the 0.10% EE group compared to that in the PC group. A plasma biochemical analysis revealed a significant increase in the ALP (alkaline phosphatase) activity in the 0.05% EE group relative to the PC group, while the TG (triglycerides) levels progressively decreased as the EE levels increased. Furthermore, the GLU (glucose) levels were significantly reduced in both the EE-supplemented and NC groups compared to those in the PC group. Among the genes associated with glucose metabolism, both gk (glucokinase) and pepck (phosphoenol pyruvate carboxykinase) exhibited a pattern of initially decreasing, followed by an increase, as the EE levels rose, with the pepck (phosphoenol pyruvate carboxykinase) expression being lowest in the 0.10% EE group. In conclusion, appropriate EE supplementation in the diet may promote growth performance, enhance antioxidant capacity, and support the expression of genes related to glucose metabolism of M.salmoides in response to different starch levels.
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(This article belongs to the Special Issue Largemouth Bass Aquaculture)
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Open AccessArticle
Characterization of Immune Response Against Mycobacterium marinum Infection in Coho Salmon (Oncorhynchus kisutch)
by
Le Li, Danlei Xu, Xiaoqing Yu, Chunlei Gai, Haibin Ye and Jing Diao
Fishes 2025, 10(6), 268; https://doi.org/10.3390/fishes10060268 - 3 Jun 2025
Abstract
Mycobacterium marinum is an opportunistic pathogen prevalent in aquatic environments, causing significant morbidity in fish, including Coho salmon (Oncorhynchus kisutch), a species increasingly cultured in Chinese salmonid aquaculture. This study investigated the immune response of Coho salmon to M. marinum infection
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Mycobacterium marinum is an opportunistic pathogen prevalent in aquatic environments, causing significant morbidity in fish, including Coho salmon (Oncorhynchus kisutch), a species increasingly cultured in Chinese salmonid aquaculture. This study investigated the immune response of Coho salmon to M. marinum infection and the bacterial proliferation dynamics in the liver and kidney. Transcriptome analysis revealed 5028 differentially expressed genes (DEGs) in the kidney and 3419 DEGs in the liver at 6 weeks post-infection. Gene Ontology and KEGG enrichment analysis highlighted pathways such as cytokine–cytokine receptor interaction, metabolic pathways, and Toll-like receptor signaling in the kidney, while the DEGs in the liver were enriched in metabolic pathways, immune system processes, and stress and defense responses. The temporal expression profiling of 15 immune-related genes, including acute-phase proteins (serum amyloid A-5 and hepcidin), cytokines (TNF-α, IL-1β, IL-17A), chemokines (CXCL13 and CCL19), pattern recognition receptors (Toll-like receptor 13), and other immune-related genes, showed significant upregulation against M. marinum infection, with stronger responses in the liver. Furthermore, it was found that there was a progressive proliferation of M. marinum in the infected liver and kidney from approximately 2.5 log10 cfu/g at week 2 to about 6 log10 cfu/g by 6 weeks, with a significantly higher load in the liver. These findings provide critical insights into the immune mechanisms of Coho salmon against M. marinum and the pathogen’s tissue-specific proliferation, offering a foundation for developing targeted control strategies against M. marinum in aquaculture.
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(This article belongs to the Special Issue Microbial Pathogens, Disease Control and Veterinary Drug Use in Aquaculture)
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Open AccessArticle
Fasting Meets the Forecast: Thermal Conditions Influence Post-Mortem Muscle Traits in Rainbow Trout (Oncorhynchus mykiss)
by
Andrea Martínez Villalba, Álvaro De la Llave-Propín, Jesús De la Fuente, Elisabet González de Chavarri, María Teresa Díaz, Montserrat Fernández-Muela, Almudena Cabezas, Roberto González-Garoz, Morris Villarroel and Rubén Bermejo-Poza
Fishes 2025, 10(6), 267; https://doi.org/10.3390/fishes10060267 - 3 Jun 2025
Abstract
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In aquaculture, pre-slaughter fasting reduces stress and improves muscle quality. Fasting periods of 55–58 degree days (°C d) enhance muscle structure and post-mortem biochemistry in rainbow trout (Oncorhynchus mykiss), although optimal durations vary with temperature. This study investigated the effects of
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In aquaculture, pre-slaughter fasting reduces stress and improves muscle quality. Fasting periods of 55–58 degree days (°C d) enhance muscle structure and post-mortem biochemistry in rainbow trout (Oncorhynchus mykiss), although optimal durations vary with temperature. This study investigated the effects of fasting from none to extended durations on 495 rainbow trout under summer (22 °C) and winter (8 °C) conditions. In summer, elevated temperatures increased muscle glycogen, leading to lower pH and delayed rigor mortis (RM), especially in fasted groups, where RM peaked at 24 h post-mortem. In winter, RM occurred earlier. Prolonged fasting increased acetylcholinesterase (AChE) activity, with high baseline levels in non-fasted summer fish. Muscle lightness at 0 h post-mortem was highest in non-fasted winter fish but declined to summer levels in fasted groups. Antioxidant enzyme activity (glutathione-S-transferase, glutathione peroxidase) increased with fasting in winter, while summer heat masked responses. The expression of genes for mineralocorticoid receptors and heat shock proteins remained stable in warm conditions. Summer delayed metabolic decline due to higher glycogen-triggered excessive AChE activity from heat stress. Winter supported faster metabolic adjustment and more regulated enzyme activity. These findings highlight the need to adjust fasting strategies seasonally to optimize muscle traits, especially under thermal variations.
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Open AccessArticle
Biogeographic Variation Analysis of Phenotypic and Nutritional Quality Traits of Cultured Conger myriaster Along the Yellow Sea Coast of China
by
Yan Chen, Meijun Tao, Bao Shi, Shenglei Han, Binghua Liu, Lianshun Wang, Kewen Yan, Xinyu Zhao and Mingze Liu
Fishes 2025, 10(6), 266; https://doi.org/10.3390/fishes10060266 - 3 Jun 2025
Abstract
Aquaculture has become increasingly important as a source of high-quality animal protein and fatty acids for humans. This study investigated the morphological traits, general nutritional component, amino acid composition, fatty acid composition, and antioxidant enzyme activity of artificially cultured whitespotted conger Conger myriaster
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Aquaculture has become increasingly important as a source of high-quality animal protein and fatty acids for humans. This study investigated the morphological traits, general nutritional component, amino acid composition, fatty acid composition, and antioxidant enzyme activity of artificially cultured whitespotted conger Conger myriaster from three different suppliers, Haiyang Yellow Sea Fisheries Co., Ltd. (YT), Rizhao Rongwang aquatic science and technology Co., Ltd. (RZ), and Weihai Shenghang aquatic science and technology Co., Ltd. (WH), based on the Yellow Sea coast in China. Of the 19 morphological traits, total length, body length, and vertical eye diameter were significantly different in the C. myriaster of YT, RZ, and WH (p < 0.05). The hepatosomatic index (HSI) of YT was significantly lower than that of RZ and WH (p < 0.05), and the gonadosomatic index (GSI) was not significantly different. The moisture, crude lipid, and crude ash contents in YT were significantly different from those in RZ and WH (p < 0.05). The methionine (Met) of RZ was significantly higher than that of YT and WH (p < 0.05). C. myriaster from YT, RZ, and WH were detected to have 26, 27, and 26 fatty acids, respectively. The docosahexaenoic acid (DHA) and eicosapentaenoic acid (EPA) contents of YT were significantly higher than those of RZ and WH (p < 0.05). There were no significant differences in the antioxidant enzyme activities of C. myriaster from YT, RZ and WH (p > 0.05). The results showed that there are differences in the morphological traits, general nutritional component proximate composition, and amino acid and fatty acid compositions of cultured C. myriaster from different regions.
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(This article belongs to the Special Issue Environmental Physiology of Aquatic Animals)
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Evaluation of Apparent Nutrient Digestibility of Novel and Conventional Feed Ingredients in Sobaity Seabream (Sparidentex hasta) for Sustainable Aquaculture
by
Seemab Zehra, Aboobucker S. Abul Kasim, Reda Saleh, Paulo De Mello, Ali Alshaikhi, Joseph Laranja, Yousef Alhafedh, Brett D. Glencross, Majed A. Alghamdi and Asaad Widaa Mohamed
Fishes 2025, 10(6), 265; https://doi.org/10.3390/fishes10060265 - 3 Jun 2025
Abstract
This study aimed to evaluate the apparent digestibility coefficients (ADCs) for nutrients and energy of seven conventional and alternative feed ingredients (poultry feather meal, fermented feather meal, mealworm meal, defatted black soldier fly, Chlorella, poultry by-product meal, and corn meal) when fed to
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This study aimed to evaluate the apparent digestibility coefficients (ADCs) for nutrients and energy of seven conventional and alternative feed ingredients (poultry feather meal, fermented feather meal, mealworm meal, defatted black soldier fly, Chlorella, poultry by-product meal, and corn meal) when fed to Sobaity seabream (Sparidentex hasta), with the goal of identifying sustainable, digestible, and nutritionally viable ingredients for aquaculture feed formulations. A reference diet (RF) was formulated to meet the nutrient requirements of Sobaity seabream while test diets were prepared to contain 70% RF and 30% of the test ingredients. Sobaity seabream (200 ± 8.0 g) were fed the diets for seven days before fecal matter was collected by stripping. The whole length of the digestibility trial was 21 days. The ingredient apparent digestibility of dry matter (34.8–70.4%), crude protein (52.8–107.8%), crude lipid (67.7–112.9%), and energy (52.2–86.1%) were affected by test ingredients (p < 0.01). The dry matter digestibility of mealworm meal was the highest (70.4%) compared to other ingredients. Feather meal, Chlorella, and black soldier fly meal had significantly lower values of dry matter digestibility. Dry matter and crude protein were significantly more digestible in fermented feather meal than the feather meal without fermentation. The crude protein digestibility was significantly higher (107.8%) for mealworm meal. However, feather meal has shown a significantly lower value (52.8%) for crude protein digestibility compared to other ingredients. Energy digestibility showed a significant positive correlation with dry matter digestibility (r = 0.870). The energy digestibility of mealworm meal was significantly higher (86.1%, p < 0.05) than other ingredients. Feather meal had the lowest energy digestibility (52.2%) with no statistically significant difference from Chlorella, corn meal, and black soldier fly meal. This study indicates that mealworm meal is the most easily digestible protein source for Sobaity seabream and should be prioritized in their diets. Fermentation enhances the digestibility of feather meal and is recommended when using it. Ingredients with a lower digestibility, like feather meal, chlorella, and black soldier fly meal, should be used in moderation or undergo further processing to improve nutrient availability.
Full article
(This article belongs to the Special Issue Advances in Aquaculture Feed Additives)

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