Journal Description
Biology
Biology
is an international, peer-reviewed, open access journal of biological sciences published semimonthly online by MDPI. The Spanish Society for Nitrogen Fixation (SEFIN) and Federation of European Laboratory Animal Science Associations (FELASA) are affiliated with Biology and their members receive discounts on the article processing charges.
- Open Access— free for readers, with article processing charges (APC) paid by authors or their institutions.
- High Visibility: indexed within Scopus, SCIE (Web of Science), PubMed, PMC, PubAg, CAPlus / SciFinder, and other databases.
- Journal Rank: JCR - Q1 (Biology) / CiteScore - Q1 (General Agricultural and Biological Sciences )
- Rapid Publication: manuscripts are peer-reviewed and a first decision is provided to authors approximately 14.2 days after submission; acceptance to publication is undertaken in 2.6 days (median values for papers published in this journal in the first half of 2026).
- Recognition of Reviewers: Reviewers whose reports are timely and of high quality receive an APC discount voucher for a future publication in an MDPI journal. Become a reviewer.
- Journal Cluster of Biochemistry and Molecular Biology: Current Issues in Molecular Biology, International Journal of Molecular Sciences, Genes, Biomolecules, Biology, Cells, Proteomes, Non-Coding RNA, Epigenomes, Methods and Protocols, Journal of Molecular Pathology, BioChem, DNA, Stresses, Receptors and Kinases and Phosphatases.
Impact Factor:
4.3 (2025);
5-Year Impact Factor:
4.6 (2025)
Latest Articles
A View from Inside and Outside the Tree: Using Different Techniques to Assess the Use of Black Woodpecker Cavities in Forests
Biology 2026, 15(19), 1687; https://doi.org/10.3390/biology15191687 (registering DOI) - 22 Sep 2026
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Large cavities are important for maintaining forest biodiversity. However, accurately assessing cavity use and identifying the communities of organisms associated with these structures remain challenging and are still insufficiently studied. Between 2022 and 2026, tree cavities excavated by the Black Woodpecker (Dryocopus
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Large cavities are important for maintaining forest biodiversity. However, accurately assessing cavity use and identifying the communities of organisms associated with these structures remain challenging and are still insufficiently studied. Between 2022 and 2026, tree cavities excavated by the Black Woodpecker (Dryocopus martius) in northeastern Poland were monitored using two complementary techniques: camera traps installed near cavity entrances and an action camera used to inspect cavity interiors. The aim of this study was to assess the diversity of animal communities associated with Black Woodpecker cavities and to compare the effectiveness of the two monitoring methods. In total, 32 bird species, six mammal species, and 11 insect species were recorded as using Black Woodpecker cavities. Inspections of cavity interiors confirmed breeding by 19 bird species and 4 mammal species, and 4 insect species. Camera traps recorded 29 bird species, four mammal species, and one species of social insect at cavity entrances. Over half (51.7%) of the bird species recorded at cavity entrances were not detected inside the cavities, whereas 17.6% of bird species confirmed to breed in the cavities were not detected by camera traps. Camera traps also did not allow for the identification of bat species or the detection of insects other than hornets. The results demonstrate that the assemblages of animals associated with Black Woodpecker cavities differed depending on the monitoring method used. Traditional observation methods may underestimate the diversity of cavity-associated fauna, particularly species that remain hidden inside cavities or use them only during specific stages of their life cycle. The two modern techniques used in this study provided complementary information and should therefore be considered together when assessing the diversity and use of tree cavities by forest fauna.
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Open AccessArticle
Rice Bran as a Sustainable Feed Material Substitute to Improve the Meat Quality in Late-Stage Wenchang Chicken
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Jie Liu, Limin Wei, Qiqi Guo, Jingli Yuan, Yan Zhang, Xiuping Wang and Quanwei Liu
Biology 2026, 15(19), 1686; https://doi.org/10.3390/biology15191686 - 22 Sep 2026
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The growing competition between humans and livestock for corn-soybean based feed calls for sustainable alternatives like rice bran. This study assessed substituting feed with rice bran (0%, 5%, 10%, 15%, 20%) in diets for slow-growing Wenchang chickens, a prized Chinese yellow-feathered breed. Up
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The growing competition between humans and livestock for corn-soybean based feed calls for sustainable alternatives like rice bran. This study assessed substituting feed with rice bran (0%, 5%, 10%, 15%, 20%) in diets for slow-growing Wenchang chickens, a prized Chinese yellow-feathered breed. Up to 15% substitution maintained final body weight and average daily gain, but 20% substitution reduced body weight. Feed intake rose significantly at 10–20% substitution. Substituting 15–20% rice bran for feed significantly reduced abdominal fat without affecting slaughter performance or serum biochemical indicators. Meat quality had trade-offs: thigh muscle redness improved at 15%, and breast muscle fibers changed, but water-holding capacity decreased with increased cooking loss. Breast muscle intramuscular fat and inosinic acid increased, while fatty acid profiles changed, reducing both beneficial (e.g., oleic acid) and undesirable trans fatty acids at ≥10%, and saturated fatty acids in thigh muscle at 15%. Moreover, in the 20% group, alanine and glycine levels in breast muscles were notably lower than in the control and 5% groups. Additionally, the 15–20% group showed a significant reduction in total amino acids, the 10–20% group showed a significant reduction in flavor amino acids, and various free amino acids in thigh muscles were also reduced compared to the control group. Rice bran affected meat quality and nutrition, with mixed effects. Notably, incorporating a 10% rice bran substitute in the diet can improve meat quality traits in slow-growing yellow-feathered broiler chickens without impacting production performance.
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Open AccessArticle
Morphology, Distribution and Sexual Dimorphism of Sensilla in the Tea Leaf Beetle Basilepta melanopus (Coleoptera: Eumolpidae)
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Dingran Zhang, Huan Qiu, Yuetong Guan, Wenzheng Tang, Rongrong Tan, Xun Chen, Hongjuan Wang, Danjuan Huang, Lijin An, Lin Du, Fen Zhu, Long Jiao and Yingxin Mao
Biology 2026, 15(19), 1685; https://doi.org/10.3390/biology15191685 - 22 Sep 2026
Abstract
The tea leaf beetle Basilepta melanopus is a devastating leaf-feeding pest of tea plants, with its infestation area and damage severity in Chinese tea plantations continuously increasing. Characterizing the morphology and distribution of sensilla provides a morphological basis for understanding the behavioral mechanisms
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The tea leaf beetle Basilepta melanopus is a devastating leaf-feeding pest of tea plants, with its infestation area and damage severity in Chinese tea plantations continuously increasing. Characterizing the morphology and distribution of sensilla provides a morphological basis for understanding the behavioral mechanisms underlying host recognition, mate localization, and environmental perception of this pest. In this study, the morphology, ultrastructural characteristics, distribution and sexual dimorphism of sensilla on antennae, mouthparts, legs, and external genitalia of B. melanopus adults were examined by stereomicroscopy and scanning electron microscopy (SEM). Nine types and thirty-nine subtypes of sensilla were observed. These include various types on the antennae, including Böhm bristles, sensilla chaetica, sensilla trichodea, sensilla basiconica, sensilla auricillica, sensilla coeloconica, and sensillar pits, and many subtypes. The two types of sensilla unique to the mouthparts are sensilla styloconica and sensilla campaniformia. Sensilla chaetica and sensilla trichodea are also found on the tarsi. In addition, sensilla trichodea and sensilla basiconica were identified on the external genitalia of the female insect. On the male external genitalia, four types of sensilla were observed: sensilla trichodea, sensilla chaetica, sensilla basiconica, and sensilla coeloconica. There were also differences in the number and size of sensilla between males and females. This study investigated the relationship between the sensilla of B. melanopus and its key behavioral activities, namely feeding and oviposition, through detailed morphological observations and systematic analysis of these sensory structures. The findings provide a conceptual framework and offer novel perspectives for future research on the behavioral ecology and integrated management of this species.
Full article
(This article belongs to the Special Issue Research on Morphology and Sensorimotor Systems of Insect Antennae)
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Open AccessArticle
Corncob-Derived Xylo-Oligosaccharides Attenuate Acrylamide-Induced Gut–Liver Toxicity in Mice, Associated with Modulation of Gut Microbiota and SCFA Metabolism
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Le He, Yanjuan Chen, Ruiping Luo, Zhongke Sun, Erting Liu, Lili Li and Zonghao Yue
Biology 2026, 15(19), 1684; https://doi.org/10.3390/biology15191684 - 22 Sep 2026
Abstract
Acrylamide (AA) is a common foodborne toxicant formed during the thermal processing of starch-rich foods and poses significant risks to the gut–liver axis. Although corncob-derived xylo-oligosaccharides (XOS) have emerged as promising prebiotics with multiple bioactivities, their protective effects against foodborne toxicants have not
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Acrylamide (AA) is a common foodborne toxicant formed during the thermal processing of starch-rich foods and poses significant risks to the gut–liver axis. Although corncob-derived xylo-oligosaccharides (XOS) have emerged as promising prebiotics with multiple bioactivities, their protective effects against foodborne toxicants have not been explored. This study investigated the ameliorative effects of dietary corncob-derived XOS on AA-induced gut–liver toxicity and the underlying mechanisms in mice. Female C57BL/6J mice were gavaged with AA and concurrently fed diets with or without 7.0% XOS for 7 weeks. The results showed that XOS effectively alleviated AA-induced gut–liver toxicity, as evidenced by attenuated intestinal and hepatic inflammation (decreased pro-inflammatory cytokines IL-6 in colon, TNF-α, and IL1-β in liver; increased anti-inflammatory IL-10 in colon and liver), restored intestinal barrier integrity (upregulated Zo-1, Occludin, and Claudin-1 mRNA, along with increased goblet cell numbers and mucus secretion), and ameliorated hepatic oxidative stress (upregulated Nrf2/Nqo1/Ho1 mRNA expression, restored CAT activity, and reduced H2O2 accumulation). 16S sequencing revealed that XOS supplementation significantly increased the Shannon index in AA-exposed mice compared with the AA group, suggesting enhanced cecal microbial diversity, although AA exposure did not significantly reduce α-diversity. Further analysis showed that XOS reshaped the community composition, particularly by reducing pro-inflammatory genera (Dubosiella, Desulfovibrio, Faecalibaculum, and Faecalimonas) and enriching short chain fatty acid (SCFA)-producing bacteria (Bifidobacterium, norank_f__Muribaculaceae, and Akkermansia). Furthermore, XOS significantly elevated SCFA levels in AA-treated mice, including acetic, propionic, butyric, valeric, and isovaleric acids. Collectively, these findings demonstrate that dietary XOS ameliorates AA-induced gut–liver toxicity in mice when co-administered with AA. This protective effect was associated with modulation of the gut microbiota and SCFA metabolism, providing a basis for future studies exploring the potential of XOS against foodborne contaminant toxicity.
Full article
(This article belongs to the Section Toxicology)
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Open AccessReview
Nodulation Signaling Pathway 2: A Proposed Multifunctional Signaling Hub for Coordinating Plant Architecture, Rhizosphere Chemistry, and Symbiotic Associations Under Nutrient Stress
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Yanting Wang, Yanni Zhao, Ranran Liu, Shulei Wang and Yuanfeng Li
Biology 2026, 15(19), 1683; https://doi.org/10.3390/biology15191683 - 22 Sep 2026
Abstract
Under nutrient stress, plants adjust shoot branching, root remodeling, and symbiotic associations to optimize survival and growth. The GRAS-type transcription factor NODULATION SIGNALING PATHWAY 2 (NSP2) participates in these responses through context-dependent interactions with partners: NSP1, MYB40, and SLR1, and is indirectly repressed
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Under nutrient stress, plants adjust shoot branching, root remodeling, and symbiotic associations to optimize survival and growth. The GRAS-type transcription factor NODULATION SIGNALING PATHWAY 2 (NSP2) participates in these responses through context-dependent interactions with partners: NSP1, MYB40, and SLR1, and is indirectly repressed by SMAX1 via NSP1 and SLR1. NSP2 functions differ among species: it directly binds DNA in rice (Oryza sativa) strigolactone (SL) biosynthesis, whereas in M. truncatula it acts as a co-regulator in nodulation and flavonoid regulation, with NSP1 or MYB40 providing DNA-binding activity; the NSP2–MYB module also appears conserved in barley (Hordeum vulgare). Through these partnerships, NSP2 is proposed to coordinate three interconnected modules influencing plant architecture, rhizosphere chemistry, and symbiotic associations. The NSP1–NSP2 heterodimer activates SL biosynthesis under phosphate deficiency, remodeling root/shoot architecture and balancing N/P uptake in rice. The NSP1–NSP2–SLR1–SMAX1 quaternary module integrates phosphate, gibberellin, and karrikin signals to orchestrate arbuscular mycorrhizal symbiosis in rice. Under nitrogen limitation and rhizobial infection, the NSP2–MYB40 module enhances flavonoid biosynthesis to promote rhizobial nodulation in Medicago truncatula. These findings suggest that the NSP2-centered network could be targeted to improve nutrient-use efficiency, although further field validation is required.
Full article
(This article belongs to the Special Issue Plant Mineral Nutrition: Enhancing Plant Resilience)
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Open AccessFeature PaperArticle
Acute Neuromuscular Responses and Interlimb Asymmetry Following 5 km and Half-Marathon Running in Recreational Runners
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Danijela Kuna, Petar Šušnjara and Klara Findrik
Biology 2026, 15(19), 1682; https://doi.org/10.3390/biology15191682 - 22 Sep 2026
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Acute neuromuscular responses to running may vary according to exercise duration and physiological demands. This study compared changes in vastus medialis contractile properties, quadriceps maximal voluntary isometric contraction (MVIC), and interlimb asymmetry following 5 km and half-marathon running trials. Twenty-eight male recreational runners
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Acute neuromuscular responses to running may vary according to exercise duration and physiological demands. This study compared changes in vastus medialis contractile properties, quadriceps maximal voluntary isometric contraction (MVIC), and interlimb asymmetry following 5 km and half-marathon running trials. Twenty-eight male recreational runners (36.96 ± 11.35 years) completed both trials 10 days apart. Maximal radial displacement (Dm), contraction time (Tc), and contraction velocity (Vc) were assessed using tensiomyography, while quadriceps MVIC was assessed using isometric dynamometry before and after each trial. Absolute interlimb asymmetry and its direction were also analysed. The unadjusted analysis showed a greater pre-to-post increase in Dm following the half-marathon; however, the effect of the running trial on post-running Dm was not significant after adjustment for baseline Dm. Tc and MVIC decreased after both trials, whereas Vc increased, with no significant running trial × time interactions for these outcomes. TMG- and MVIC-derived absolute interlimb asymmetry remained unchanged. Acute post-running responses differed according to the neuromuscular characteristic assessed rather than consistently according to running distance. Changes in contractile properties and maximal force-generating capacity were not accompanied by a systematic increase in the magnitude of between-leg differences.
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Open AccessSystematic Review
Molecular Stress Biomarkers in Aquaculture: A Systematic Review
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Alba Sellés-Egea, David G. Valcarce and Vanesa Robles
Biology 2026, 15(19), 1681; https://doi.org/10.3390/biology15191681 - 22 Sep 2026
Abstract
This systematic review of the literature aimed to explore the molecular biomarkers used for the detection of stress in the aquaculture sector over the last decade. Relevant studies were retrieved from the Web of Science, Scopus and PubMed databases, which were last searched
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This systematic review of the literature aimed to explore the molecular biomarkers used for the detection of stress in the aquaculture sector over the last decade. Relevant studies were retrieved from the Web of Science, Scopus and PubMed databases, which were last searched on 13 June 2025. After screening according to predefined eligibility criteria and PRISMA 2020, 64 peer-reviewed original research articles published between 2015 and 2025 were included. The included studies were qualitatively synthesised. These studies evaluated molecular biomarkers of stress across 31 fish species, with Salmo salar being the most frequently studied, followed by Oncorhynchus mykiss. China, Spain and Canada contributed the largest numbers of included studies. In total, 20 different stressors were identified. Temperature was the most frequently investigated stressor, followed by stocking density, hypoxia and exposure to various chemicals. Publication activity has grown over the last decade, with a clear increase since 2020. This systematic review was conducted to integrate current knowledge and emerging evidence on molecular markers in teleost fish, aiming to provide a comprehensive understanding of both established biomarkers and novel molecular candidates identified through recent studies. Although considerable heterogeneity was observed among fish species, stress protocols and biomarker assessment methods, the evidence supports the growing value of integrated biomarker approaches for stress assessment in aquaculture. Overall, the evidence supports integrated, context-specific biomarker approaches that combine molecular endpoints with established physiological indicators to improve stress assessment in aquaculture.
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(This article belongs to the Section Marine and Freshwater Biology)
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Open AccessArticle
Effect of Nano- and Microparticulate Fermented Fish Protein Hydrolysate Diets on Growth, Digestive Function, Intestinal Development, and Gene Expression in Common Carp (Cyprinus carpio) Larvae
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Zohaib Noor, Faisal Ahmad Lodhi, Waqar Younas, Fahim Ullah Khan, Zaigham Hassan, Muhammad Rizwan, Saif Ullah, Fida Ullah Khan, Fathul Bari and Md. Fakhrul Islam
Biology 2026, 15(19), 1680; https://doi.org/10.3390/biology15191680 - 22 Sep 2026
Abstract
The early larval stage is a major bottleneck in freshwater aquaculture because conventional live feeds are not always available for optimum nutrient availability and digestibility to satisfy the nutritional requirements of developing larvae. This study evaluated the effects of micro- and nano-particulate fermented
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The early larval stage is a major bottleneck in freshwater aquaculture because conventional live feeds are not always available for optimum nutrient availability and digestibility to satisfy the nutritional requirements of developing larvae. This study evaluated the effects of micro- and nano-particulate fermented and fish protein hydrolysate-based diets on growth, digestive enzyme activity, intestinal morphology, and immune-related gene expression in common carp (Cyprinus carpio) larvae. Four experimental diets, namely fish hydrolysate-based micro-feed (FHMF), fermented micro-feed (FMF), fish hydrolysate-based nano-feed (FHNF), and fermented nano-feed (FNF), were compared with a basal diet. Feed characterization confirmed the successful production of micro- (5–15 µm) and nano-sized (90–105 nm) particles with distinct physicochemical properties. Three-day-old hatchlings were reared for 45 days, and growth performance, survival, digestive enzyme activities, intestinal histomorphology, and gene expression were analyzed. Diet type significantly influenced all measured parameters (p < 0.001). Among the treatments, FNF consistently produced the highest growth, survival, digestive enzyme activities, villus development, and muscular layer thickness. Growth-related genes (GH, IGF-1, and ghrelin) and immune-related genes (lysozyme, TNF, IL-1β, IL-10, and TGF-β) also followed an upregulated trend. These findings demonstrate that nanoparticulate fermented feed is a promising nutritional strategy for enhancing larval growth, digestion, immune competence, and production efficiency in common carp aquaculture.
Full article
(This article belongs to the Special Issue State of the Art in Fish Nutrition: Antimicrobials, Immunostimulants, Synbiotics and Alternative Protein Sources)
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Open AccessArticle
Tree Diversity, Floristic Composition, and Forest Structure in Three Permanent Montane Forest Plots in Northern Peru
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Rosalynn Yohanna Rivera López, Carlos Reynel Rodriguez, Jürgen Homeier, Helge Walentowski and Jaris Veneros
Biology 2026, 15(19), 1679; https://doi.org/10.3390/biology15191679 - 22 Sep 2026
Abstract
Tropical montane forests provide essential ecosystem services and are of considerable ecological importance. However, knowledge gaps remain regarding how tree diversity, floristic composition, and forest structure vary among permanent plots across the sampled elevational range (2169–2519 m a.s.l.). We established three independent 1
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Tropical montane forests provide essential ecosystem services and are of considerable ecological importance. However, knowledge gaps remain regarding how tree diversity, floristic composition, and forest structure vary among permanent plots across the sampled elevational range (2169–2519 m a.s.l.). We established three independent 1 ha permanent forest plots, with a single plot representing each sampled elevation (2169, 2347, and 2519 m a.s.l.). Because each sampled elevation was represented by a single plot, this design does not provide replication for formal statistical testing of elevational trends; therefore, differences among the three plots were interpreted descriptively. All trees with DBH ≥ 10 cm were inventoried to characterize tree diversity, floristic composition, and forest structure. Diversity was estimated using Hill numbers, and floristic differentiation was assessed using non-metric multidimensional scaling (NMDS). A total of 2336 individuals belonging to 46 families, 75 genera, and 147 species were recorded. Alpha diversity differed among plots, with values ranging from 49 to 67 species (q = 0), 17.2 to 24.6 (q = 1), and 10.7 to 13.6 (q = 2). P-OC1 showed the highest observed species richness and floristic diversity among the three plots. Lauraceae was the most diverse family, while the ecological importance of dominant families, as indicated by FIVI, varied among plots. Comparison with nine additional permanent plots from montane forests of northern, central, and southern Peru revealed floristic differentiation among plots in the NMDS ordination (stress = 0.068). Neither elevation (R2 = 0.280, p = 0.223) nor species richness (R2 = 0.044, p = 0.826) was significantly associated with the ordination. This study establishes an ecological baseline for the three permanent plots evaluated and expands the available information on the diversity, composition, and structure of montane forests in northern Peru.
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(This article belongs to the Section Ecology)
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Graphical abstract
Open AccessReview
N6-Methyladenosine and 5-Methylcytosine Epitranscriptomic Regulation of Male Reproduction and Fertility
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Sana M. Salih, Ayman Al-Hendy and Qiwei Yang
Biology 2026, 15(19), 1678; https://doi.org/10.3390/biology15191678 - 22 Sep 2026
Abstract
Functional spermatozoa production depends on spermatogenesis, a complex developmental process that requires precise regulation of gene expression at multiple levels. Although considerable progress has been made in understanding the transcriptional and epigenetic mechanisms governing germ cell development, post-transcriptional regulation mediated by RNA modifications
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Functional spermatozoa production depends on spermatogenesis, a complex developmental process that requires precise regulation of gene expression at multiple levels. Although considerable progress has been made in understanding the transcriptional and epigenetic mechanisms governing germ cell development, post-transcriptional regulation mediated by RNA modifications has recently emerged as an important component of male fertility regulation. Epitranscriptomics, the study of chemical RNA modifications and their associated regulatory proteins, has revealed diverse roles for RNA modifications in spermatogenesis, sperm maturation, fertilization, and early embryonic development. Among more than 170 RNA modifications identified to date, N6-methyladenosine (m6A) and 5-methylcytosine (m5C) are well characterized in the male reproductive system. Distinct groups of regulatory proteins function to deposit, remove, and recognize these modifications, thereby controlling RNA fate and metabolism. Functional studies in genetic knockout animal models show that disrupting key epitranscriptomic regulators contributes to abnormal germ cell development at multiple developmental stages. Notably, adverse environmental exposure reprograms the germ cell epitranscriptome, leading to abnormal spermatogenesis and male infertility. In light of recent advances, this narrative review summarizes current progress in male fertility, with particular emphasis on m6A and m5C RNA modifications. Finally, it outlines future perspectives on RNA modification studies in male fertility. Deeper mechanistic insights into male infertility can contribute to the development of new targeted therapies.
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(This article belongs to the Section Developmental and Reproductive Biology)
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Open AccessArticle
Multi-Species Transcriptomics of the Mammalian Stomach Reveals Conserved Programs and Ruminant Chamber Specialization
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Qi-Xuan Huang, Zhi-Hui Wang, Wen-Tian Wei, Si-Rui Liu, Yi-Lin Bai, Yue-Yu Bai, Meng-Hua Li and Song-Song Xu
Biology 2026, 15(19), 1677; https://doi.org/10.3390/biology15191677 - 22 Sep 2026
Abstract
The mammalian stomach has conserved digestive functions but also shows major anatomical and physiological differences among species. However, broad comparative transcriptomic analyses across mammals and across ruminant stomach chambers remain limited. Here, we collected and integrated 111 bulk RNA-seq datasets from 11 mammalian
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The mammalian stomach has conserved digestive functions but also shows major anatomical and physiological differences among species. However, broad comparative transcriptomic analyses across mammals and across ruminant stomach chambers remain limited. Here, we collected and integrated 111 bulk RNA-seq datasets from 11 mammalian species (humans, mice, monkeys, dogs, horses, donkeys, pigs, cattle, deer, goats, and sheep) and analyzed 12,048 shared one-to-one orthologous genes. We identified 56 conserved genes mainly involved in translation, ribosome biogenesis, protein homeostasis, and mitochondrial function. Pairwise comparisons revealed extensive transcriptional differences, with 2070–7110 differentially expressed genes across species pairs, together with distinct species-associated transcription-factor activity patterns. We also identified 25 ruminant-enriched genes associated with epithelial differentiation, ion transport, mucosal defense, and metabolism. Analysis of 69 samples from the rumen, reticulum, omasum, and abomasum of sheep, goats, cattle, and deer showed clear chamber-associated transcriptomic differences. The abomasum had a distinct expression program, with 235 enriched genes related to hormone regulation, secretion, transport, and digestion. Weighted gene co-expression network analysis further identified different gene programs in the forestomach and abomasum. Together, these findings reveal conserved, species-associated, and chamber-associated transcriptional features of the mammalian stomach and provide a useful framework for understanding its molecular diversity.
Full article
(This article belongs to the Section Evolutionary Biology)
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Open AccessArticle
Genome-Wide Characterization of Phosphate Transporters Reveals Differential Regulation of Growth and Medicinal Metabolite Accumulation Under Phosphorus Deficiency in Ginkgo biloba
by
Yadi Chen, Chi Zhang, Fangmei Cheng, Qingtao Xu and Weixing Li
Biology 2026, 15(19), 1676; https://doi.org/10.3390/biology15191676 - 22 Sep 2026
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Ginkgo biloba L. (G. biloba) is an important medicinal tree species rich in bioactive flavonoids and terpene lactones. Phosphate transporters (PHTs) play essential roles in phosphate uptake, transport, and homeostasis; however, their characteristics and functions in G. biloba remain unclear. In
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Ginkgo biloba L. (G. biloba) is an important medicinal tree species rich in bioactive flavonoids and terpene lactones. Phosphate transporters (PHTs) play essential roles in phosphate uptake, transport, and homeostasis; however, their characteristics and functions in G. biloba remain unclear. In this study, 21 non-redundant GbPHT genes were identified from the G. biloba genome and classified into five subfamilies, including PHT1, PHT2, PHT3, PHT4, and PHO, containing five, one, four, six, and five members, respectively. Promoter analysis revealed abundant cis-elements associated with light, hormone, and stress responses, suggesting complex regulatory patterns of GbPHT genes. To investigate the effects of phosphorus availability on growth and medicinal metabolites, G. biloba seedlings were subjected to normal phosphorus and phosphorus deficiency treatments. Phosphorus deficiency significantly inhibited root development, biomass accumulation, and photosynthetic performance. However, phosphorus deficiency markedly enhanced flavonoid accumulation in leaves and terpene lactone accumulation in roots, accompanied by increased expression of key structural genes involved in their biosynthetic pathways. Furthermore, transient overexpression of GbPHT1-1 in G. biloba leaves promoted flavonoid accumulation and upregulated flavonoid biosynthetic genes. Collectively, this study provides the first comprehensive characterization of the G. biloba PHT family and reveals that phosphorus deficiency coordinates growth restriction with enhanced medicinal secondary metabolite accumulation. These findings provide new insights into phosphorus adaptation and nutrient regulation of medicinal quality in G. biloba.
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Open AccessArticle
Whole-Genome Re-Sequencing Identifies Male-Associated Markers and a Marker-Enriched Region on Chromosome 14 in Siniperca scherzeri
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Jianbo Zheng, Xiaohai Zhang, Xiaohui Xu, Shili Liu, Wenping Jiang, Chao Zhu, Cancan Huang and Fei Li
Biology 2026, 15(19), 1675; https://doi.org/10.3390/biology15191675 - 22 Sep 2026
Abstract
Sex-specific markers are important for genetic sex identification and sex-control breeding in aquaculture. Siniperca scherzeri (Steindachner, 1892) is an economically important freshwater fish with female-biased sexual size dimorphism, but its sex-associated genomic architecture remains poorly characterized. Here, whole-genome resequencing of 10 females and
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Sex-specific markers are important for genetic sex identification and sex-control breeding in aquaculture. Siniperca scherzeri (Steindachner, 1892) is an economically important freshwater fish with female-biased sexual size dimorphism, but its sex-associated genomic architecture remains poorly characterized. Here, whole-genome resequencing of 10 females and 10 males generated approximately 480 Gb of clean data and identified 55 candidate male-associated fragments using a read-presence/absence screening strategy. PCR testing identified seven candidate male-associated markers that showed male-specific amplification and complete concordance with phenotypic sex in the tested S. scherzeri cohort. Marker4, Marker5, and Marker18 showed the same amplification pattern in the tested Siniperca chuatsi (Basilewsky, 1855) and Siniperca knerii (Garman, 1912) samples. The seven amplicons mapped to a marker-enriched interval at 20.677–20.695 Mb on chromosome 14. Marker18 overlapped a partial candidate amh-family gene model; however, no male-specific sequence variant, sex-biased expression, or functional role was tested. Because all S. scherzeri samples originated from one farmed cohort of unknown pedigree and the PCR assays lacked dedicated no-template and internal amplification controls, the observed concordance should not be interpreted as established diagnostic performance. The data support a male-associated marker cluster on chromosome 14, rather than establishing a Y-specific sex-determining region or a differentiated sex chromosome. Independent population validation with appropriate assay controls, together with genome-wide structural, expression, and functional analyses, is required.
Full article
(This article belongs to the Section Bioinformatics)
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Open AccessArticle
Aquatic and Terrestrial Environmental Correlates of Eurasian Water Shrew (Neomys fodiens) Habitat Use in the Lesser Khingan Mountains
by
Yao Zhao, Haoying Bian, Zhuo Wang, Zhitao Liu, Juncheng Li and Peng Liu
Biology 2026, 15(18), 1674; https://doi.org/10.3390/biology15181674 - 21 Sep 2026
Abstract
Understanding habitat selection is essential for predicting species distributions and developing effective conservation strategies, particularly for semi-aquatic mammals. However, habitat requirements of the Eurasian water shrew (Neomys fodiens, EWS) remain poorly understood in northeastern China. We investigated habitat use by comparing
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Understanding habitat selection is essential for predicting species distributions and developing effective conservation strategies, particularly for semi-aquatic mammals. However, habitat requirements of the Eurasian water shrew (Neomys fodiens, EWS) remain poorly understood in northeastern China. We investigated habitat use by comparing 44 used and 44 control plots in the Lesser Khingan Mountains during winter and spring. Aquatic and terrestrial environmental characteristics were evaluated separately using generalized linear models and multimodel inference, and supported predictors were subsequently combined in an integrated model. Habitat use decreased significantly with increasing distance from water (β = −0.333, p = 0.008), was higher in still-water than in fast-flowing habitats (β = 1.728, p = 0.04), and was substantially lower at upper-slope than at lower-slope sites (β = −2.712, p = 0.02). The integrated model received stronger support (AICc = 101.62) than the aquatic (AICc = 106.21) and terrestrial (AICc = 110.50) models and showed the highest discriminatory performance (AUC = 0.853). This advantage was retained under repeated stratified 10-fold cross-validation, with a mean AUC of 0.786 ± 0.013. These findings indicate that EWS habitat use is better characterized by considering aquatic and terrestrial environmental characteristics jointly rather than separately and highlight the importance of the aquatic–terrestrial interface for habitat assessment and conservation of this semi-aquatic species in northeastern China.
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(This article belongs to the Section Conservation Biology and Biodiversity)
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Open AccessReview
From Association to Causality: Next-Generation GWAS, Pangenomes, and Multi-Omics Driving Gene Discovery and Precision Breeding in Cereal Crops
by
Helmy M. Youssef, Radwa Y. Helmi, Andreas Börner, Mahmoud M. Sakr and Mohamed El-Soda
Biology 2026, 15(18), 1673; https://doi.org/10.3390/biology15181673 - 21 Sep 2026
Abstract
Genome-wide association studies (GWASs) have become a central tool in plant genomics, providing high-resolution access to the genetic architecture of complex traits in cereal crops. This review observes the application of GWASs to biotic and abiotic stress responses and nutritional quality in rice
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Genome-wide association studies (GWASs) have become a central tool in plant genomics, providing high-resolution access to the genetic architecture of complex traits in cereal crops. This review observes the application of GWASs to biotic and abiotic stress responses and nutritional quality in rice (Oryza sativa), wheat (Triticum aestivum), maize (Zea mays), and barley (Hordeum vulgare). However, conventional SNP-based GWASs may overlook structural and presence–absence variation, and significant associations do not by themselves identify the causal gene or variant. Recent methodological developments, including multi-locus and environment-aware models, can improve the detection of complex genetic effects, while pan-genomic and graph-based references broaden the range of genomic variation available for association analysis. Integrating GWASs with transcriptomics, metabolomics, and proteomics provides additional functional evidence for candidate-gene prioritization and interpretation of associated loci. Fine mapping and functional validation, including genome-editing approaches, further help to test candidate-gene function. Together, these advances strengthen the progression from statistical association to biological interpretation and breeding-relevant genetic variation. This review discusses their current applications, limitations, and potential for improving cereal breeding.
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(This article belongs to the Section Plant Science)
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Open AccessReview
Exercise and Intestinal Barrier Integrity: Molecular Mechanisms and Therapeutic Potential in Gut Health and Disease
by
Wenqian Yang, Yuqian Liu, Haitao Wang and Guang Yang
Biology 2026, 15(18), 1672; https://doi.org/10.3390/biology15181672 - 21 Sep 2026
Abstract
The intestinal barrier (IB) is a critical interface that maintains internal homeostasis. Its functional compromise—termed intestinal hyperpermeability—permits luminal antigens such as lipopolysaccharide to enter the circulation, triggering metabolic endotoxemia and low-grade systemic inflammation that underpin both intestinal and extra-intestinal diseases. This narrative review
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The intestinal barrier (IB) is a critical interface that maintains internal homeostasis. Its functional compromise—termed intestinal hyperpermeability—permits luminal antigens such as lipopolysaccharide to enter the circulation, triggering metabolic endotoxemia and low-grade systemic inflammation that underpin both intestinal and extra-intestinal diseases. This narrative review was based on a comprehensive literature search of PubMed, Web of Science, and Scopus databases up to July 2026, using keywords related to exercise, intestinal barrier, tight junction proteins, inflammation, oxidative stress, gut microbiota, and short-chain fatty acids. The synthesis indicates that regular moderate-intensity continuous training (30–60 min/session, 3–5 sessions/week) enhances barrier integrity through upregulation of tight junction proteins, suppression of TLR4/NF-κB-driven inflammation, activation of Nrf2-mediated antioxidant defenses, and beneficial remodeling of gut microbiota composition and short-chain fatty acid production. Exercise also induces peripheral–gut crosstalk mediated by myokines and vagal cholinergic signaling. The relationship between exercise volume and barrier function follows a J-shaped dose–response curve, with moderate exercise conferring protection while excessive high-intensity or prolonged exercise transiently increases permeability via splanchnic hypoperfusion and hypoxia-induced epithelial stress. Exercise shows preliminary therapeutic potential as an adjunctive intervention in inflammatory bowel disease, irritable bowel syndrome, and metabolic-associated fatty liver disease, with systemic benefits extending through the gut–liver and gut–brain axes. However, clinical translation remains limited by small sample sizes, short follow-up periods, and heterogeneous protocols. Future research should prioritize large-scale randomized controlled trials, precision exercise prescriptions, and synergistic exercise–probiotic co-interventions to establish definitive clinical guidelines.
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(This article belongs to the Section Physiology)
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Open AccessArticle
Temporal Variation and Region- and Sex-Specific Expression of GABAA Receptor Subunits in the Mouse Suprachiasmatic Nucleus
by
Janelle Chong, James F. Cheeseman, Matthew D. M. Pawley, David Cumin, Nicola Ludin, Andrea Kwakowsky and Guy R. Warman
Biology 2026, 15(18), 1671; https://doi.org/10.3390/biology15181671 - 21 Sep 2026
Abstract
GABAergic neurotransmission plays a central role in regulating the mammalian circadian clock. However, the precise contribution of GABA type A receptor (GABAAR) subunits to timekeeping within the suprachiasmatic nucleus (SCN) remains incompletely defined. Here, we investigated the spatiotemporal expression patterns of
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GABAergic neurotransmission plays a central role in regulating the mammalian circadian clock. However, the precise contribution of GABA type A receptor (GABAAR) subunits to timekeeping within the suprachiasmatic nucleus (SCN) remains incompletely defined. Here, we investigated the spatiotemporal expression patterns of four GABAAR subunits (α1, α5, β3, and γ2) in the SCN of male and female C57BL/6 mice. Our aim was to determine whether these subunits exhibit circadian, regional, and sex-specific variation under entrained (LD12:12) and free-running (DD) conditions. Fluorescence immunohistochemistry revealed the expression of all four subunits in the SCN, with several displaying rhythmic profiles. The α1 subunit peaked during the day in both sexes and was preferentially expressed in the shell region. The α5 subunit also varied across time but lacked strong regional specificity. Temporal variation in β3 and γ2 expression was observed in males but not females, indicating potential sex-dependent regulation. Notably, the γ2 subunit showed a dynamic shift in regional distribution over the circadian cycle, with higher shell expression during the day and core enrichment at night. Under DD conditions, rhythmic expression of the α1 and γ2 subunits persisted, suggesting endogenous control independent of external light cues. However, overall amplitude and regional specificity were reduced in the absence of light. These findings demonstrate that GABAAR subunit expression within the SCN is regulated by circadian phase, SCN subregion, and biological sex. This study provides new insight into the molecular architecture of the SCN and supports the hypothesis that subunit-specific GABAergic signalling contributes to the temporal organisation of the circadian clock. Further investigation into the functional significance of these subunit patterns will help clarify their roles in SCN synchrony, photic entrainment, and sex-specific circadian regulation.
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(This article belongs to the Special Issue Neurogenetics of Behaviour—2nd Edition)
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Open AccessArticle
Effects of 16-Day Fluoxetine and pCPA Exposure on the Velocity of the Invasive Crayfish Procambarus clarkii
by
Daniel Oliveira, Filipe Banha, Pedro Anastácio and Marta C. Soares
Biology 2026, 15(18), 1670; https://doi.org/10.3390/biology15181670 - 21 Sep 2026
Abstract
Fluoxetine, a selective serotonin reuptake inhibitor (SSRI), is one of the most detected antidepressants in wastewater, managing to enter watersheds where it is taken up by freshwater fauna. Here we asked if the serotonergic system affects the locomotive capabilities of Procambarus clarkii,
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Fluoxetine, a selective serotonin reuptake inhibitor (SSRI), is one of the most detected antidepressants in wastewater, managing to enter watersheds where it is taken up by freshwater fauna. Here we asked if the serotonergic system affects the locomotive capabilities of Procambarus clarkii, a prolific worldwide invasive crayfish species, thanks in part to its dispersal rates. For this, we exposed adult crayfish to 1 µg/L and 100 µg/L solutions of fluoxetine and para-chlorophenylalanine (pCPA, a tryptophan hydroxylase inhibitor) and measured their velocity after 8 and 16 days on a two-metre-long metal gutter. Overall, our treatment effects were revealed to be non-significant, suggesting P. clarkii has high tolerance to fluoxetine and pCPA and that at environmentally significant concentrations fluoxetine may not affect P. clarkii locomotion. Though our study was of limited scope and further research is needed with revised set-ups, these results can help us better understand the impact of ambient fluoxetine on this invasive species.
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(This article belongs to the Special Issue Biological Invasions in Freshwater Ecosystems)
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Open AccessArticle
Seizure-Inducible Risks of In Vivo Optogenetic Manipulations
by
Xutao Zhu, Zhijian Zhang, Yu Tian, Li Wang, Yue Liu, Ronghui Li, Pengjie Wen, Jie Wang, Liping Wang, Qing Liu and Fuqiang Xu
Biology 2026, 15(18), 1669; https://doi.org/10.3390/biology15181669 - 21 Sep 2026
Abstract
Optogenetic manipulation is pivotal in basic neuroscience research and in studying neuropsychiatric disorders, enabling the activation or inhibition of neuronal populations with millisecond precision. However, this technique can induce artificial neuronal hypersynchronization that is rarely observed under physiological conditions. Given that epileptic seizures
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Optogenetic manipulation is pivotal in basic neuroscience research and in studying neuropsychiatric disorders, enabling the activation or inhibition of neuronal populations with millisecond precision. However, this technique can induce artificial neuronal hypersynchronization that is rarely observed under physiological conditions. Given that epileptic seizures arise from abnormally synchronized neuronal discharges, the potential for optogenetic stimulation to trigger seizures and confound experimental outcomes warrants close examination. Here, using electrophysiological and behavioral recordings, we demonstrate that even single-trial optogenetic stimulation of CaMKII-positive neurons in the hippocampal CA1 region, anterior piriform cortex (APC), or lateral/medial entorhinal cortex (LEnt or MEnt) can induce seizure-like discharges and behaviors in adult male C57BL/6 mice. Repeated stimulation in the APC, LEnt, or MEnt elicited more severe seizure-like activity. Furthermore, stimulation protocols characterized by high power, long duration, high frequency, and medium pulse width were more prone to inducing such events. Additionally, we found that CA1 stimulation could impair subsequent contextual fear memory. These findings provide critical cautions and practical guidelines for the design and implementation of in vivo optogenetic experiments in neuroscience research.
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(This article belongs to the Section Neuroscience)
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Open AccessReview
Seasonality of Cytokines in Inflammatory Disease: Exploring Molecular Parallels with the Yellow Emperor’s Inner Canon
by
Yang Liu, Ye Zeng and Bingmei M. Fu
Biology 2026, 15(18), 1668; https://doi.org/10.3390/biology15181668 - 20 Sep 2026
Abstract
Inflammatory cytokines are well-established drivers of organ-specific pathology, yet their seasonal patterning remains poorly integrated into a single explanatory framework. This review examines whether classical descriptions of Bi syndrome in the Yellow Emperor’s Inner Canon (YEIC), translated using previously proposed molecular correspondences (Cold/IL-1,
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Inflammatory cytokines are well-established drivers of organ-specific pathology, yet their seasonal patterning remains poorly integrated into a single explanatory framework. This review examines whether classical descriptions of Bi syndrome in the Yellow Emperor’s Inner Canon (YEIC), translated using previously proposed molecular correspondences (Cold/IL-1, Dampness/IL-6, Wind/NF-κB, Evil/LPS) and treated here as a working hypothesis, are consistent with the contemporary biomedical literature. For each YEIC season-tissue pairing, relevant evidence was retrieved from PubMed covering seasonal disease epidemiology, cytokine mechanisms, and clinical progression; correspondence with the YEIC’s descriptions was assessed qualitatively across five seasonal domains rather than through a literature review with predefined inclusion criteria. IL-1, IL-6, and NF-κB predominance was mapped thematically onto seasonal cycles of tissue involvement—bone (winter), tendons (spring), vasculature (summer), muscle (late summer), and skin (autumn)—with proposed progression to related visceral injuries. This correspondence is imperfect in at least one domain: cardiovascular disease shows a larger winter, rather than summer, peak in the broader literature, and the framework has not been tested against competing explanations such as temperature, vitamin D status, infection cycles, or behavior. These findings suggest, without establishing, that IL-1, IL-6, and NF-κB may offer a shared explanatory thread across conditions conventionally treated as etiologically distinct. The YEIC, reinterpreted through a molecular lens, offers a hypothesis-generating model requiring prospective, comparative validation.
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(This article belongs to the Special Issue Cutting-Edge Biomechanics: Unlocking the Future of Biomedical Engineering)
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