Editor’s Choice Articles

Editor’s Choice articles are based on recommendations by the scientific editors of MDPI journals from around the world. Editors select a small number of articles recently published in the journal that they believe will be particularly interesting to readers, or important in the respective research area. The aim is to provide a snapshot of some of the most exciting work published in the various research areas of the journal.

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Review

22 pages, 762 KiB  
Review
Grafting Tomato as a Tool to Improve Salt Tolerance
by Hira Singh, Pradeep Kumar, Ashwani Kumar, Marios C. Kyriacou, Giuseppe Colla and Youssef Rouphael
Agronomy 2020, 10(2), 263; https://doi.org/10.3390/agronomy10020263 - 12 Feb 2020
Cited by 61 | Viewed by 9224
Abstract
Salinity in soil or water is a serious threat to global agriculture; the expected acreage affected by salinity is about 20% of the global irrigated lands. Improving salt tolerance of plants through breeding is a complex undertaking due to the number of traits [...] Read more.
Salinity in soil or water is a serious threat to global agriculture; the expected acreage affected by salinity is about 20% of the global irrigated lands. Improving salt tolerance of plants through breeding is a complex undertaking due to the number of traits involved. Grafting, a surgical mean of joining a scion and rootstock of two different genotypes with the desired traits, offers an alternative to breeding and biotechnological approaches to salt tolerance. Grafting can also be used to circumvent other biotic and abiotic stresses. Increasing salinity tolerance in tomato (Solanum lycopresicum L.), a highly nutritious and economical vegetable, will have greater impact on the vegetable industry, especially in (semi) arid regions where salinity in soil and water are more prevalent. Besides, plants also experience salt stress when water in hydroponic system is recycled for tomato production. Grafting high yielding but salt-susceptible tomato cultivars onto salt-resistant/tolerant rootstocks is a sustainable strategy to overcome saline stress. Selection of salt-tolerant rootstocks though screening of available commercial and wild relatives of tomato under salt stress conditions is a pre-requisite for grafting. The positive response of grafting exerted by tolerant rootstocks or scion-rootstock interactions on yield and fruit characteristics of tomato under saline conditions is attributed to several physiological and biochemical changes. In this review, the importance of tomato grafting, strategies to select appropriate rootstocks, scion-rootstock interaction for growth, yield and quality characteristics, as well as the tolerance mechanisms that (grafted) plants deploy to circumvent or minimize the effects of salt stress in root zones are discussed. The future challenges of grafting tomato are also highlighted. Full article
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16 pages, 1565 KiB  
Review
Non-Chemical Weed Management in Vegetables by Using Cover Crops: A Review
by Husrev Mennan, Khawar Jabran, Bernard H. Zandstra and Firat Pala
Agronomy 2020, 10(2), 257; https://doi.org/10.3390/agronomy10020257 - 11 Feb 2020
Cited by 62 | Viewed by 10662
Abstract
Vegetables are a substantial part of our lives and possess great commercial and nutritional value. Weeds not only decrease vegetable yield but also reduce their quality. Non-chemical weed control is important both for the organic production of vegetables and achieving ecologically sustainable weed [...] Read more.
Vegetables are a substantial part of our lives and possess great commercial and nutritional value. Weeds not only decrease vegetable yield but also reduce their quality. Non-chemical weed control is important both for the organic production of vegetables and achieving ecologically sustainable weed management. Estimates have shown that the yield of vegetables may be decreased by 45%–95% in the case of weed–vegetable competition. Non-chemical weed control in vegetables is desired for several reasons. For example, there are greater chances of contamination of vegetables by herbicide residue compared to cereals or pulse crops. Non-chemical weed control in vegetables is also needed due to environmental pollution, the evolution of herbicide resistance in weeds and a strong desire for organic vegetable cultivation. Although there are several ways to control weeds without the use of herbicides, cover crops are an attractive choice because these have a number of additional benefits (such as soil and water conservation) along with the provision of satisfactory and sustainable weed control. Several cover crops are available that may provide excellent weed control in vegetable production systems. Cover crops such as rye, vetch, or Brassicaceae plants can suppress weeds in rotations, including vegetables crops such as tomato, cabbage, or pumpkin. Growers should also consider the negative effects of using cover crops for weed control, such as the negative allelopathic effects of some cover crop residues on the main vegetable crop. Full article
(This article belongs to the Special Issue Ecologically Sustainable Weed Management in Cropping Systems)
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20 pages, 1855 KiB  
Review
A Conceptual Framework for Winter Dormancy in Deciduous Trees
by Erica Fadón, Eduardo Fernandez, Helen Behn and Eike Luedeling
Agronomy 2020, 10(2), 241; https://doi.org/10.3390/agronomy10020241 - 06 Feb 2020
Cited by 88 | Viewed by 11805
Abstract
The perennial life strategy of temperate trees relies on establishing a dormant stage during winter to survive unfavorable conditions. To overcome this dormant stage, trees require cool (i.e., chilling) temperatures as an environmental cue. Numerous approaches have tried to decipher the physiology of [...] Read more.
The perennial life strategy of temperate trees relies on establishing a dormant stage during winter to survive unfavorable conditions. To overcome this dormant stage, trees require cool (i.e., chilling) temperatures as an environmental cue. Numerous approaches have tried to decipher the physiology of dormancy, but these efforts have usually remained relatively narrowly focused on particular regulatory or metabolic processes, recently integrated and linked by transcriptomic studies. This work aimed to synthesize existing knowledge on dormancy into a general conceptual framework to enhance dormancy comprehension. The proposed conceptual framework covers four physiological processes involved in dormancy progression: (i) transport at both whole-plant and cellular level, (ii) phytohormone dynamics, (iii) genetic and epigenetic regulation, and (iv) dynamics of nonstructural carbohydrates. We merged the regulatory levels into a seasonal framework integrating the environmental signals (i.e., temperature and photoperiod) that trigger each dormancy phase. Full article
(This article belongs to the Special Issue Fruit and Nut Tree Phenology in a Warming World)
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25 pages, 6598 KiB  
Review
Local Solutions for Sustainable Food Systems: The Contribution of Orphan Crops and Wild Edible Species
by Teresa Borelli, Danny Hunter, Stefano Padulosi, Nadezda Amaya, Gennifer Meldrum, Daniela Moura de Oliveira Beltrame, Gamini Samarasinghe, Victor W. Wasike, Birgül Güner, Ayfer Tan, Yara Koreissi Dembélé, Gaia Lochetti, Amadou Sidibé and Florence Tartanac
Agronomy 2020, 10(2), 231; https://doi.org/10.3390/agronomy10020231 - 05 Feb 2020
Cited by 49 | Viewed by 11180
Abstract
Calls for a global food system transformation and finding more sustainable ways of producing healthier, safe and nutritious food for all have spurred production approaches such as sustainable intensification and biofortification with limited consideration of the copious amounts of orphan crops, traditional varieties [...] Read more.
Calls for a global food system transformation and finding more sustainable ways of producing healthier, safe and nutritious food for all have spurred production approaches such as sustainable intensification and biofortification with limited consideration of the copious amounts of orphan crops, traditional varieties and wild edible species readily available in many countries, mostly in and around smallholder farmers’ fields. This paper explores the potential role of locally available; affordable and climate-resilient orphan crops, traditional varieties and wild edible species to support local food system transformation. Evidence from Brazil, Kenya, Guatemala, India, Mali, Sri Lanka and Turkey is used to showcase a three-pronged approach that aims to: (i) increase evidence of the nutritional value and biocultural importance of these foods, (ii) better link research to policy to ensure these foods are considered in national food and nutrition security strategies and actions, and (iii) improve consumer awareness of the desirability of these alternative foods so that they may more easily be incorporated in diets, food systems and markets. In the seven countries, this approach has brought about positive changes around increasing community dietary diversity and increasing market opportunities for smallholder growers, as well as increased attention to biodiversity conservation. Full article
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21 pages, 3459 KiB  
Review
From Smart Farming towards Agriculture 5.0: A Review on Crop Data Management
by Verónica Saiz-Rubio and Francisco Rovira-Más
Agronomy 2020, 10(2), 207; https://doi.org/10.3390/agronomy10020207 - 03 Feb 2020
Cited by 438 | Viewed by 53548
Abstract
The information that crops offer is turned into profitable decisions only when efficiently managed. Current advances in data management are making Smart Farming grow exponentially as data have become the key element in modern agriculture to help producers with critical decision-making. Valuable advantages [...] Read more.
The information that crops offer is turned into profitable decisions only when efficiently managed. Current advances in data management are making Smart Farming grow exponentially as data have become the key element in modern agriculture to help producers with critical decision-making. Valuable advantages appear with objective information acquired through sensors with the aim of maximizing productivity and sustainability. This kind of data-based managed farms rely on data that can increase efficiency by avoiding the misuse of resources and the pollution of the environment. Data-driven agriculture, with the help of robotic solutions incorporating artificial intelligent techniques, sets the grounds for the sustainable agriculture of the future. This paper reviews the current status of advanced farm management systems by revisiting each crucial step, from data acquisition in crop fields to variable rate applications, so that growers can make optimized decisions to save money while protecting the environment and transforming how food will be produced to sustainably match the forthcoming population growth. Full article
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21 pages, 365 KiB  
Review
Extension of Avocado Fruit Postharvest Quality Using Non-Chemical Treatments
by Karen Munhuweyi, Semakaleng Mpai and Dharini Sivakumar
Agronomy 2020, 10(2), 212; https://doi.org/10.3390/agronomy10020212 - 02 Feb 2020
Cited by 39 | Viewed by 14355
Abstract
Developing postharvest management techniques using environmentally friendly and non-chemical approaches is key to extending the shelf life of avocados in a safer and health conscious manner. Avocados are prone to postharvest deterioration caused by mechanical damage, chilling injury, soft landing, uneven ripening and [...] Read more.
Developing postharvest management techniques using environmentally friendly and non-chemical approaches is key to extending the shelf life of avocados in a safer and health conscious manner. Avocados are prone to postharvest deterioration caused by mechanical damage, chilling injury, soft landing, uneven ripening and decay. Among the different cultivars of avocados commercially grown worldwide, the ‘Hass’ variety continues to be the most predominant due to its nutty flavour and functional properties. Most of the literature on postharvest decay and disorders affecting avocado fruit quality during storage and marketing is dedicated to the Hass avocado. Some of these postharvest problems are unique to the ‘Hass’ avocado can possibly be controlled by simply investing more research into other cultivars. These postharvest losses can be significantly controlled using eco-friendly technologies, such as modified atmosphere, physical heat treatments and most importantly investing in natural biodegradable products with naturally inherent antimicrobial properties. Thus, this review includes the recent research-based information on the use of non-chemical treatments on the improvement of fruit health and quality. Full article
32 pages, 1070 KiB  
Review
Towards a Sustainable Agriculture: Strategies Involving Phytoprotectants against Salt Stress
by José Ramón Acosta-Motos, Consuelo Penella, José A. Hernández, Pedro Díaz-Vivancos, María Jesús Sánchez-Blanco, Josefa María Navarro, María José Gómez-Bellot and Gregorio Barba-Espín
Agronomy 2020, 10(2), 194; https://doi.org/10.3390/agronomy10020194 - 01 Feb 2020
Cited by 38 | Viewed by 6566
Abstract
Salinity is one of the main constraints for agriculture productivity worldwide. This important abiotic stress has worsened in the last 20 years due to the increase in water demands in arid and semi-arid areas. In this context, increasing tolerance of crop plants to [...] Read more.
Salinity is one of the main constraints for agriculture productivity worldwide. This important abiotic stress has worsened in the last 20 years due to the increase in water demands in arid and semi-arid areas. In this context, increasing tolerance of crop plants to salt stress is needed to guarantee future food supply to a growing population. This review compiles knowledge on the use of phytoprotectants of microbial origin (arbuscular mycorrhizal fungi and plant growth-promoting rhizobacteria), osmoprotectants, melatonin, phytohormones and antioxidant metabolism-related compounds as alleviators of salt stress in numerous plant species. Phytoprotectants are discussed in detail, including their nature, applicability, and role in the plant in terms of physiological and phenotype effects. As a result, increased crop yield and crop quality can be achieved, which in turn positively impact food security. Herein, efforts from academic and industrial sectors should focus on defining the treatment conditions and plant-phytoprotectant associations providing higher benefits. Full article
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11 pages, 419 KiB  
Review
Natural Compounds as Elicitors of Plant Resistance Against Diseases and New Biocontrol Strategies
by Agnieszka Jamiołkowska
Agronomy 2020, 10(2), 173; https://doi.org/10.3390/agronomy10020173 - 25 Jan 2020
Cited by 90 | Viewed by 14329
Abstract
The goal of sustainable and organic agriculture is to optimize the health and productivity of interdependent communities of soil life, plants, animals, and people. Organic plant production uses natural products and natural self-regulation processes occurring in the ecosystem. The availability of innovative applications [...] Read more.
The goal of sustainable and organic agriculture is to optimize the health and productivity of interdependent communities of soil life, plants, animals, and people. Organic plant production uses natural products and natural self-regulation processes occurring in the ecosystem. The availability of innovative applications and molecular techniques opens up new possibilities in the approach to plant protection for sustainable and organic agriculture. New strategies not only directly protect plants against pathogens but can also induce enhanced immunity that permanently protects against pathogenic strains. This review focuses on the bioactive properties of selected natural compounds (of plant and animal origin), their action on pathogens, and their roles in the mechanism of inducing plant resistance. The author presents selected activities of organic bioactive compounds, such as allicin, naringin, terpenes, laminarin, carrageenans, chitin and chitosan, and outlines the possibilities for their application in protecting crop plants against diseases. In addition, this mini review describes the mechanism of action of the above compounds as elicitors of defense reactions in the plant and the possibility of their utilization in the production of biological preparations as elements of a new plant protection strategy. Full article
(This article belongs to the Special Issue Biocontrol of Mycotoxins Contamination of Crops)
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35 pages, 2864 KiB  
Review
A Review of Current and Potential Applications of Remote Sensing to Study the Water Status of Horticultural Crops
by Deepak Gautam and Vinay Pagay
Agronomy 2020, 10(1), 140; https://doi.org/10.3390/agronomy10010140 - 17 Jan 2020
Cited by 35 | Viewed by 7453
Abstract
With increasingly advanced remote sensing systems, more accurate retrievals of crop water status are being made at the individual crop level to aid in precision irrigation. This paper summarises the use of remote sensing for the estimation of water status in horticultural crops. [...] Read more.
With increasingly advanced remote sensing systems, more accurate retrievals of crop water status are being made at the individual crop level to aid in precision irrigation. This paper summarises the use of remote sensing for the estimation of water status in horticultural crops. The remote measurements of the water potential, soil moisture, evapotranspiration, canopy 3D structure, and vigour for water status estimation are presented in this comprehensive review. These parameters directly or indirectly provide estimates of crop water status, which is critically important for irrigation management in farms. The review is organised into four main sections: (i) remote sensing platforms; (ii) the remote sensor suite; (iii) techniques adopted for horticultural applications and indicators of water status; and, (iv) case studies of the use of remote sensing in horticultural crops. Finally, the authors’ view is presented with regard to future prospects and research gaps in the estimation of the crop water status for precision irrigation. Full article
(This article belongs to the Special Issue Increasing Agricultural Water Productivity in a Changing Environment)
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14 pages, 639 KiB  
Review
Arbuscular Mycorrhizal Fungi and Associated Microbiota as Plant Biostimulants: Research Strategies for the Selection of the Best Performing Inocula
by Luca Giovannini, Michela Palla, Monica Agnolucci, Luciano Avio, Cristiana Sbrana, Alessandra Turrini and Manuela Giovannetti
Agronomy 2020, 10(1), 106; https://doi.org/10.3390/agronomy10010106 - 11 Jan 2020
Cited by 108 | Viewed by 24751
Abstract
Arbuscular mycorrhizal fungi (AMF) are beneficial soil microorganisms establishing mutualistic symbioses with the roots of the most important food crops and playing key roles in the maintenance of long-term soil fertility and health. The great inter- and intra-specific AMF diversity can be fully [...] Read more.
Arbuscular mycorrhizal fungi (AMF) are beneficial soil microorganisms establishing mutualistic symbioses with the roots of the most important food crops and playing key roles in the maintenance of long-term soil fertility and health. The great inter- and intra-specific AMF diversity can be fully exploited by selecting AMF inocula on the basis of their colonization ability and efficiency, which are affected by fungal and plant genotypes and diverse environmental variables. The multiple services provided by AMF are the result of the synergistic activities of the bacterial communities living in the mycorrhizosphere, encompassing nitrogen fixation, P solubilization, and the production of phytohormones, siderophores, and antibiotics. The tripartite association among host plants, mycorrhizal symbionts, and associated bacteria show beneficial emerging properties which could be efficiently exploited in sustainable agriculture. Further in-depth studies, both in microcosms and in the field, performed on different AMF species and isolates, should evaluate their colonization ability, efficiency, and resilience. Transcriptomic studies can reveal the expression levels of nutrient transporter genes in fungal absorbing hyphae in the presence of selected bacterial strains. Eventually, newly designed multifunctional microbial consortia can be utilized as biofertilizers and biostimulants in sustainable and innovative production systems. Full article
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33 pages, 3324 KiB  
Review
Recent Advances in Evapotranspiration Estimation Using Artificial Intelligence Approaches with a Focus on Hybridization Techniques—A Review
by Min Yan Chia, Yuk Feng Huang, Chai Hoon Koo and Kit Fai Fung
Agronomy 2020, 10(1), 101; https://doi.org/10.3390/agronomy10010101 - 10 Jan 2020
Cited by 58 | Viewed by 5778
Abstract
Difficulties are faced when formulating hydrological processes, including that of evapotranspiration (ET). Conventional empirical methods for formulating these possess some shortcomings. The artificial intelligence approach emerges as the best possible solution to map the relationships between climatic parameters and ET, even with limited [...] Read more.
Difficulties are faced when formulating hydrological processes, including that of evapotranspiration (ET). Conventional empirical methods for formulating these possess some shortcomings. The artificial intelligence approach emerges as the best possible solution to map the relationships between climatic parameters and ET, even with limited knowledge of the interactions between variables. This review presents the state-of-the-art application of artificial intelligence models in ET estimation, along with different types and sources of data. This paper discovers the most significant climatic parameters for different climate patterns. The characteristics of the basic artificial intelligence models are also explored in this review. To overcome the pitfalls of the individual models, hybrid models which use techniques such as data fusion and ensemble modeling, data decomposition as well as remote sensing-based hybridization, are introduced. In particular, the principles and applications of the hybridization techniques, as well as their combinations with basic models, are explained. The review covers most of the related and excellent papers published from 2011 to 2019 to keep its relevancy in terms of time frame and field of study. Guidelines for the future prospects of ET estimation in research are advocated. It is anticipated that such work could contribute to the development of agriculture-based economy. Full article
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14 pages, 1310 KiB  
Review
Is Phytomelatonin a New Plant Hormone?
by Marino B. Arnao and Josefa Hernández-Ruiz
Agronomy 2020, 10(1), 95; https://doi.org/10.3390/agronomy10010095 - 09 Jan 2020
Cited by 100 | Viewed by 8651
Abstract
Melatonin (N-acetyl-5-methoxytryptamine) is of particular importance as a chronobiological hormone in mammals, acting as a signal of darkness that provides information to the brain and peripheral organs. It is an endogenous synchronizer for both endocrine (i.e., via neurotransmitter release) and other [...] Read more.
Melatonin (N-acetyl-5-methoxytryptamine) is of particular importance as a chronobiological hormone in mammals, acting as a signal of darkness that provides information to the brain and peripheral organs. It is an endogenous synchronizer for both endocrine (i.e., via neurotransmitter release) and other physiological rhythms. In this work we will try to add to the series of scientific events and discoveries made in plants that, surprisingly, confirm the great similarity of action of melatonin in animals and plants. The most relevant milestones on the 25 years of phytomelatonin studies are presented, from its discovery in 1995 to the discovery of its receptor in plants in 2018, suggesting it should be regarded as a new plant hormone. Full article
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28 pages, 743 KiB  
Review
Advances in Genomic Interventions for Wheat Biofortification: A Review
by Dinesh Kumar Saini, Pooja Devi and Prashant Kaushik
Agronomy 2020, 10(1), 62; https://doi.org/10.3390/agronomy10010062 - 02 Jan 2020
Cited by 42 | Viewed by 7066
Abstract
Wheat is an essential constituent of cereal-based diets, and one of the most significant sources of calories. However, modern wheat varieties are low in proteins and minerals. Biofortification is a method for increasing the availability of essential elements in the edible portions of [...] Read more.
Wheat is an essential constituent of cereal-based diets, and one of the most significant sources of calories. However, modern wheat varieties are low in proteins and minerals. Biofortification is a method for increasing the availability of essential elements in the edible portions of crops through agronomic or genetic and genomic interventions. Wheat biofortification, as a research topic, has become increasingly prevalent. Recent accomplishments in genomic biofortification could potentially be helpful for the development of biofortified wheat grains, as a sustainable solution to the issue of “hidden hunger”. Genomic interventions mainly include quantitative trait loci (QTL) mapping, marker-assisted selection (MAS), and genomic selection (GS). Developments in the identification of QTL and in the understanding of the physiological and molecular bases of the QTLs controlling the biofortification traits in wheat have revealed new horizons for the improvement of modern wheat varieties. Markers linked with the QTLs of desirable traits can be identified through QTL mapping, which can be employed for MAS. Besides MAS, a powerful tool, GS, also has great potential for crop improvement. We have compiled information from QTL mapping studies on wheat, carried out for the identification of the QTLs associated with biofortification traits, and have discussed the present status of MAS and different prospects of GS for wheat biofortification. Accelerated mapping studies, as well as MAS and GS schemes, are expected to improve wheat breeding efficiency further. Full article
(This article belongs to the Special Issue Biofortification of Crops)
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Other

23 pages, 1900 KiB  
Systematic Review
Current and Future Challenges and Opportunities for Livestock Farming in West Africa: Perspectives from the Case of Senegal
by Rasu Eeswaran, A. Pouyan Nejadhashemi, Aliou Faye, Doohong Min, P. V. Vara Prasad and Ignacio A. Ciampitti
Agronomy 2022, 12(8), 1818; https://doi.org/10.3390/agronomy12081818 - 31 Jul 2022
Cited by 9 | Viewed by 13048
Abstract
Livestock farming is a livelihood activity and is critically important for the food and nutritional security of the majority of the population in West African countries, including Senegal. Nevertheless, livestock farming operates far below the optimum production potential, mainly due to demographical, biophysical, [...] Read more.
Livestock farming is a livelihood activity and is critically important for the food and nutritional security of the majority of the population in West African countries, including Senegal. Nevertheless, livestock farming operates far below the optimum production potential, mainly due to demographical, biophysical, economic, environmental, and sociopolitical challenges. To address these issues, we conducted this review with an overall objective of characterizing different livestock farming systems and to identify challenges and opportunities to improve livestock production in West Africa through the broader perspectives from the case of Senegal. Pastoral, agropastoral, and off-land systems are the three major livestock production systems in this region, which are unique in terms of agroclimatology and degree of intensification and integration. The major challenges identified in livestock farming systems are lack of pasture and quality feed, scarcity of water resources, climate change, undeveloped breeding and management of livestock, poor marketing and trade, and socioeconomic constraints. Moreover, we contribute to the literature on crop-livestock farming in Senegal and West Africa by proposing plausible interventions to improve the productivity of the farming system to improve food and nutritional security. Concentrated efforts must be taken in co-designing effective management interventions for sustainable intensification of livestock sector in the region, considering site-specific approaches. Full article
(This article belongs to the Section Grassland and Pasture Science)
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39 pages, 4980 KiB  
Systematic Review
Agronomic Practices to Increase the Yield and Quality of Common Bean (Phaseolus vulgaris L.): A Systematic Review
by Ioannis Karavidas, Georgia Ntatsi, Vasiliki Vougeleka, Anestis Karkanis, Theodora Ntanasi, Costas Saitanis, Evgenios Agathokleous, Andreas Ropokis, Leo Sabatino, Fanny Tran, Pietro P. M. Iannetta and Dimitrios Savvas
Agronomy 2022, 12(2), 271; https://doi.org/10.3390/agronomy12020271 - 21 Jan 2022
Cited by 33 | Viewed by 16174
Abstract
Common bean (Phaseolus vulgaris L.) is the most important legume for human consumption worldwide and an important source of vegetable protein, minerals, antioxidants, and bioactive compounds. The N2-fixation capacity of this crop reduces its demand for synthetic N fertilizer application [...] Read more.
Common bean (Phaseolus vulgaris L.) is the most important legume for human consumption worldwide and an important source of vegetable protein, minerals, antioxidants, and bioactive compounds. The N2-fixation capacity of this crop reduces its demand for synthetic N fertilizer application to increase yield and quality. Fertilization, yield, and quality of common bean may be optimised by several other agronomic practices such as irrigation, rhizobia application, sowing density, etc. Taking this into consideration, a systematic review integrated with a bibliometric analysis of several agronomic practices that increase common bean yield and quality was conducted, based on the literature published during 1971–2021. A total of 250 publications were found dealing with breeding (n = 61), sowing density and season (n = 14), irrigation (n = 36), fertilization (n = 27), intercropping (n = 12), soilless culture (n = 5), tillage (n = 7), rhizobia application (n = 36), biostimulant/biofertilizer application (n = 21), disease management (n = 15), pest management (n = 2) and weed management (n = 14). The leading research production sites were Asia and South America, whereas from the Australian continent, only four papers were identified as relevant. The keyword co-occurrence network analyses revealed that the main topics addressed in relation to common bean yield in the scientific literature related to that of “pod”, “grain”, “growth”, “cultivar” and “genotype”, followed by “soil”, “nitrogen”, “inoculation”, “rhizobia”, “environment”, and “irrigation”. Limited international collaboration among scientists was found, and most reported research was from Brazil. Moreover, there is a complete lack in interdisciplinary interactions. Breeding for increased yield and selection of genotypes adapted to semi-arid environmental conditions combined with the suitable sowing densities are important agronomic practices affecting productivity of common bean. Application of fertilizers and irrigation practices adjusted to the needs of the plants according to the developmental stage and selection of the appropriate tillage system are also of high importance to increase common bean yield and yield qualities. Reducing N-fertilization via improved N-fixation through rhizobia inoculation and/or biostimulants application appeared as a main consideration to optimise crop performance and sustainable management of this crop. Disease and weed management practices appear neglected areas of research attention, including integrated pest management. Full article
(This article belongs to the Section Horticultural and Floricultural Crops)
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14 pages, 1887 KiB  
Technical Note
Evaluation of Depth Cameras for Use in Fruit Localization and Sizing: Finding a Successor to Kinect v2
by Chiranjivi Neupane, Anand Koirala, Zhenglin Wang and Kerry Brian Walsh
Agronomy 2021, 11(9), 1780; https://doi.org/10.3390/agronomy11091780 - 05 Sep 2021
Cited by 40 | Viewed by 6066
Abstract
Eight depth cameras varying in operational principle (stereoscopy: ZED, ZED2, OAK-D; IR active stereoscopy: Real Sense D435; time of flight (ToF): Real Sense L515, Kinect v2, Blaze 101, Azure Kinect) were compared in context of use for in-orchard fruit localization and sizing. For [...] Read more.
Eight depth cameras varying in operational principle (stereoscopy: ZED, ZED2, OAK-D; IR active stereoscopy: Real Sense D435; time of flight (ToF): Real Sense L515, Kinect v2, Blaze 101, Azure Kinect) were compared in context of use for in-orchard fruit localization and sizing. For this application, a specification on bias-corrected root mean square error of 20 mm for a camera-to-fruit distance of 2 m and operation under sunlit field conditions was set. The ToF cameras achieved the measurement specification, with a recommendation for use of Blaze 101 or Azure Kinect made in terms of operation in sunlight and in orchard conditions. For a camera-to-fruit distance of 1.5 m in sunlight, the Azure Kinect measurement achieved an RMSE of 6 mm, a bias of 17 mm, an SD of 2 mm and a fill rate of 100% for depth values of a central 50 × 50 pixels group. To enable inter-study comparisons, it is recommended that future assessments of depth cameras for this application should include estimation of a bias-corrected RMSE and estimation of bias on estimated camera-to-fruit distances at 50 cm intervals to 3 m, under both artificial light and sunlight, with characterization of image distortion and estimation of fill rate. Full article
(This article belongs to the Special Issue In-Field Estimation of Fruit Quality and Quantity)
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18 pages, 3553 KiB  
Technical Note
A Two-Step PCR Protocol Enabling Flexible Primer Choice and High Sequencing Yield for Illumina MiSeq Meta-Barcoding
by Ko-Hsuan Chen, Reid Longley, Gregory Bonito and Hui-Ling Liao
Agronomy 2021, 11(7), 1274; https://doi.org/10.3390/agronomy11071274 - 23 Jun 2021
Cited by 17 | Viewed by 6260
Abstract
High-throughput amplicon sequencing that primarily targets the 16S ribosomal DNA (rDNA) (for bacteria and archaea) and the Internal Transcribed Spacer rDNA (for fungi) have facilitated microbial community discovery across diverse environments. A three-step PCR that utilizes flexible primer choices to construct the library [...] Read more.
High-throughput amplicon sequencing that primarily targets the 16S ribosomal DNA (rDNA) (for bacteria and archaea) and the Internal Transcribed Spacer rDNA (for fungi) have facilitated microbial community discovery across diverse environments. A three-step PCR that utilizes flexible primer choices to construct the library for Illumina amplicon sequencing has been applied to several studies in forest and agricultural systems. The three-step PCR protocol, while producing high-quality reads, often yields a large number (up to 46%) of reads that are unable to be assigned to a specific sample according to its barcode. Here, we improve this technique through an optimized two-step PCR protocol. We tested and compared the improved two-step PCR meta-barcoding protocol against the three-step PCR protocol using four different primer pairs (fungal ITS: ITS1F-ITS2 and ITS1F-ITS4, and bacterial 16S: 515F-806R and 341F-806R). We demonstrate that the sequence quantity and recovery rate were significantly improved with the two-step PCR approach (fourfold more read counts per sample; determined reads ≈90% per run) while retaining high read quality (Q30 > 80%). Given that synthetic barcodes are incorporated independently from any specific primers, this two-step PCR protocol can be broadly adapted to different genomic regions and organisms of scientific interest. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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23 pages, 4900 KiB  
Perspective
Fusarium Wilt of Bananas: A Review of Agro-Environmental Factors in the Venezuelan Production System Affecting Its Development
by Barlin O. Olivares, Juan C. Rey, Deyanira Lobo, Juan A. Navas-Cortés, José A. Gómez and Blanca B. Landa
Agronomy 2021, 11(5), 986; https://doi.org/10.3390/agronomy11050986 - 15 May 2021
Cited by 52 | Viewed by 11767
Abstract
Bananas and plantains (Musa spp.) are among the main staple of millions of people in the world. Among the main Musaceae diseases that may limit its productivity, Fusarium wilt (FW), caused by Fusarium oxysporum f. sp. cubense (Foc), has been [...] Read more.
Bananas and plantains (Musa spp.) are among the main staple of millions of people in the world. Among the main Musaceae diseases that may limit its productivity, Fusarium wilt (FW), caused by Fusarium oxysporum f. sp. cubense (Foc), has been threatening the banana industry for many years, with devastating effects on the economy of many tropical countries, becoming the leading cause of changes in the land use on severely affected areas. In this article, an updated, reflective and practical review of the current state of knowledge concerning the main agro-environmental factors that may affect disease progression and dissemination of this dangerous pathogen has been carried out, focusing on the Venezuelan Musaceae production systems. Environmental variables together with soil management and sustainable cultural practices are important factors affecting FW incidence and severity, excluding that the widespread dissemination of Foc, especially of its highly virulent tropical race 4 (TR4), is mainly caused by human activities. Additionally, risk analysis and climatic suitability maps for Foc TR4 in Venezuela have been developed. Although currently there are no effective management solutions available for FW control, this perspective provides an overview on the influence that environmental and agricultural variables would have on FW incidence and severity, giving some insight into management factors that can contribute to reducing its detrimental effects on banana production and how climate change may affect its development. Full article
(This article belongs to the Special Issue Diagnosis, Population Biology and Management of Vascular Diseases)
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21 pages, 9778 KiB  
Perspective
Date Palm Pollen: Features, Production, Extraction and Pollination Methods
by Ricardo Salomón-Torres, Robert Krueger, Juan Pablo García-Vázquez, Rafael Villa-Angulo, Carlos Villa-Angulo, Noé Ortiz-Uribe, Jesús Arturo Sol-Uribe and Laura Samaniego-Sandoval
Agronomy 2021, 11(3), 504; https://doi.org/10.3390/agronomy11030504 - 08 Mar 2021
Cited by 32 | Viewed by 16897
Abstract
Date palm pollen (DPP) plays a very important role in the fertilization process, since its viability and the pollination method influence on the quality, development, and yield of the fruit. In the present study, a broad review of its main characteristics, consumption, and [...] Read more.
Date palm pollen (DPP) plays a very important role in the fertilization process, since its viability and the pollination method influence on the quality, development, and yield of the fruit. In the present study, a broad review of its main characteristics, consumption, and DPP production are presented, as well as a description of its extraction methods and viability tests. The evolution of the pollination methods used in the date palm is also presented, from its natural pollination to the use of specialized mechanical and electrical devices, as well as the use of dry DPP and the current trend towards the use of DPP in liquid suspension. Likewise, the efficiency of the methods of natural pollination (wind); traditional (strands placement); dusting hand; dusting with manual, mechanical, or electric pollinator; and liquid pollination were evaluated from the fruit set percentage (FSP). Finally, starting from a scientometric analysis, the pollination methods were widely discussed, concluding that the dusting spraying of pollen suspension with liquid DPP is the pollination method that commonly presents the highest FSP, followed by dusting dry DPP with a motorized pollinator. Full article
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14 pages, 2493 KiB  
Perspective
Landscape Epidemiology of Xylella fastidiosa in the Balearic Islands
by Diego Olmo, Alicia Nieto, David Borràs, Marina Montesinos, Francesc Adrover, Aura Pascual, Pere A. Gost, Bàrbara Quetglas, Alejandro Urbano, Juan de Dios García, María Pilar Velasco-Amo, Concepción Olivares-García, Omar Beidas, Andreu Juan, Ester Marco-Noales, Margarita Gomila, Juan Rita, Eduardo Moralejo and Blanca B. Landa
Agronomy 2021, 11(3), 473; https://doi.org/10.3390/agronomy11030473 - 04 Mar 2021
Cited by 35 | Viewed by 4292
Abstract
Xylella fastidiosa (Xf) is a vascular plant pathogen native to the Americas. In 2013, it was first reported in Europe, implicated in a massive die-off of olive trees in Apulia, Italy. This finding prompted mandatory surveys across Europe, successively revealing that [...] Read more.
Xylella fastidiosa (Xf) is a vascular plant pathogen native to the Americas. In 2013, it was first reported in Europe, implicated in a massive die-off of olive trees in Apulia, Italy. This finding prompted mandatory surveys across Europe, successively revealing that the bacterium was already established in some distant areas of the western Mediterranean. To date, the Balearic Islands (Spain) hold the major known genetic diversity of Xf in Europe. Since October 2016, four sequence types (ST) belonging to the subspecies fastidiosa (ST1), multiplex (ST7, ST81), and pauca (ST80) have been identified infecting 28 host species, including grapevines, almond, olive, and fig trees. ST1 causes Pierce’s disease (PD) and together with ST81 are responsible for almond leaf scorch disease (ALSD) in California, from where they were introduced into Mallorca in around 1993, very likely via infected almond scions brought for grafting. To date, almond leaf scorch disease affects over 81% of almond trees and Pierce’s disease is widespread in vineyards across Mallorca, although producing on average little economic impact. In this perspective, we present and analyze a large Xf-hosts database accumulated over four years of field surveys, laboratory sample analyses, and research to understand the underlying causes of Xf emergence and spread among crops and wild plants in the Balearic Islands. The impact of Xf on the landscape is discussed. Full article
(This article belongs to the Special Issue Diagnosis, Population Biology and Management of Vascular Diseases)
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16 pages, 4038 KiB  
Systematic Review
Soil Properties Prediction for Precision Agriculture Using Visible and Near-Infrared Spectroscopy: A Systematic Review and Meta-Analysis
by Arman Ahmadi, Mohammad Emami, Andre Daccache and Liuyue He
Agronomy 2021, 11(3), 433; https://doi.org/10.3390/agronomy11030433 - 26 Feb 2021
Cited by 40 | Viewed by 6933
Abstract
Reflectance spectroscopy for soil property prediction is a non-invasive, fast, and cost-effective alternative to the standard laboratory analytical procedures. Soil spectroscopy has been under study for decades now with limited application outside research. The recent advancement in precision agriculture and the need for [...] Read more.
Reflectance spectroscopy for soil property prediction is a non-invasive, fast, and cost-effective alternative to the standard laboratory analytical procedures. Soil spectroscopy has been under study for decades now with limited application outside research. The recent advancement in precision agriculture and the need for the spatial assessment of soil properties have raised interest in this technique. The performance of soil spectroscopy differs from one site to another depending on the soil’s physical composition and chemical properties but it also depends on the instrumentation, mode of use (in-situ/laboratory), spectral range, and data analysis methods used to correlate reflectance data to soil properties. This paper uses the systematic review procedure developed by the Centre for Evidence-Based Conservation (CEBC) for an evidence-based search of soil property prediction using Visible (V) and Near-InfraRed (NIR) reflectance spectroscopy. Constrained by inclusion criteria and defined methods for literature search and data extraction, a meta-analysis is conducted on 115 articles collated from 30 countries. In addition to the soil properties, findings are also categorized and reported by different aspects like date of publication, journals, countries, employed regression methods, laboratory or in-field conditions, spectra preprocessing methods, samples drying methods, spectroscopy devices, wavelengths, number of sites and samples, and data division into calibration and validation sets. The arithmetic means of the coefficient of determination (R2) over all the reports for different properties ranged from 0.68 to 0.87, with better predictions for carbon and nitrogen content and lower performance for silt and clay. After over 30 years of research on using V-NIR spectroscopy to predict soil properties, this systematic review reveals solid evidence from a literature search that this technology can be relied on as a low-cost and fast alternative for standard methods of soil properties prediction with acceptable accuracy. Full article
(This article belongs to the Special Issue Advances in Irrigation Technology and Adaptation to Climate Change)
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14 pages, 4160 KiB  
Technical Note
Application of Lateral Overturning and Backward Rollover Analysis in a Multi-Purpose Agricultural Machine Developed in South Korea
by Seok-Joon Hwang, Moon-Kyeong Jang and Ju-Seok Nam
Agronomy 2021, 11(2), 297; https://doi.org/10.3390/agronomy11020297 - 06 Feb 2021
Cited by 13 | Viewed by 2878
Abstract
This study analyzed the lateral overturning and backward rollover characteristics of a multi-purpose agricultural machine recently developed in South Korea. Free body diagrams for theoretical analysis and a three-dimensional model for dynamic simulation were created by reflecting the actual dimensions and material properties [...] Read more.
This study analyzed the lateral overturning and backward rollover characteristics of a multi-purpose agricultural machine recently developed in South Korea. Free body diagrams for theoretical analysis and a three-dimensional model for dynamic simulation were created by reflecting the actual dimensions and material properties of the multi-purpose agricultural machine. The simulation model was verified using the minimum turning radius and angle of static falling down sidelong derived through the certified performance test. The lateral overturning and backward rollover characteristics of the multi-purpose agricultural machine were analyzed using a verified simulation model and theoretical equations derived through literature review. In the lateral overturning analysis, the critical traveling speed at which lateral overturning occurs was derived according to the inner steering angle of the front wheels under steady-state turning conditions. In the backward rollover analysis, the critical angular velocity and theoretical traveling speed of the main body at which backward rollover occurs were derived according to lifting angle of the front wheels. There was no significant difference between the theoretical analysis and simulation results at 5% significance level, and we derived the appropriate traveling speed conditions of the multi-purpose agricultural machine that do not cause lateral overturning and backward rollover. Full article
(This article belongs to the Special Issue Automation for Digital Farming)
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14 pages, 1295 KiB  
Perspective
Is Tillage a Suitable Option for Weed Management in Conservation Agriculture?
by Stéphane Cordeau, Auxence Baudron and Guillaume Adeux
Agronomy 2020, 10(11), 1746; https://doi.org/10.3390/agronomy10111746 - 10 Nov 2020
Cited by 19 | Viewed by 3764
Abstract
In Europe, conservation agriculture (CA) is currently challenged by higher weed pressure, potential glyphosate ban and reduced crop yield. Based on preliminary results and a critical analysis, we provide insights on how to assess the effect of introducing different levels of tillage intensity, [...] Read more.
In Europe, conservation agriculture (CA) is currently challenged by higher weed pressure, potential glyphosate ban and reduced crop yield. Based on preliminary results and a critical analysis, we provide insights on how to assess the effect of introducing different levels of tillage intensity, after a long-term CA sequence, on weed communities and crop yield. The experiment compared three types of fallow management (ploughing (CT), reduced tillage (RT), no-till with glyphosate (NT)) on four fields after 17 years of no-plough, which ended with 7 years of CA. The introduction of tillage proved to be a major driver of weed communities before weeding (density, richness and composition) in winter wheat. Weed density and species richness before weeding was greatest in RT, intermediate in CT and lowest in NT. The number of grains per ear and crop yield increased with tillage intensity (+11% for RT, +31% for CT). We provide avenues for future research through detailed methods and key references. Differences in winter wheat productivity were possibly related to enhanced soil structure and increased mineralisation of soil organic matter. Potential benefits of occasional ploughing will depend on the density and composition of the newly upwelled weed seedbank, which will need to be assessed before implementing tillage. From a multicriteria perspective, the long-term benefits associated with CA could largely exceed short-term yield increases associated with occasional tillage. Future studies will need to characterize the impact of occasional tillage operations on the long-term multiperformance of CA systems. Full article
(This article belongs to the Special Issue Conservation Agriculture and Agroecological Weed Management)
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14 pages, 1242 KiB  
Perspective
Plant Defense Chemicals against Insect Pests
by Jessica P. Yactayo-Chang, Hoang V. Tang, Jorrel Mendoza, Shawn A. Christensen and Anna K. Block
Agronomy 2020, 10(8), 1156; https://doi.org/10.3390/agronomy10081156 - 08 Aug 2020
Cited by 52 | Viewed by 8893
Abstract
Insect pests cause significant global agricultural damage and lead to major financial and environmental costs. Crops contain intrinsic defenses to protect themselves from such pests, including a wide array of specialized secondary metabolite-based defense chemicals. These chemicals can be induced upon attack (phytoalexins) [...] Read more.
Insect pests cause significant global agricultural damage and lead to major financial and environmental costs. Crops contain intrinsic defenses to protect themselves from such pests, including a wide array of specialized secondary metabolite-based defense chemicals. These chemicals can be induced upon attack (phytoalexins) or are constitutive (phytoanticipins), and can have a direct impact on the pests or be used indirectly to attract their natural enemies. They form part of a global arms race between the crops and their insect pests, with the insects developing methods of suppression, avoidance, detoxification, or even capture of their hosts defensive chemicals. Harnessing and optimizing the chemical defense capabilities of crops has the potential to aid in the continuing struggle to enhance or improve agricultural pest management. Such strategies include breeding for the restoration of defense chemicals from ancestral varieties, or cross-species transfer of defense metabolite production. Full article
(This article belongs to the Special Issue The Chemical Defenses of Crops against Insect Pests)
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