Study on Genetic Factors Controlling Complex Traits in Crops

A special issue of Agriculture (ISSN 2077-0472). This special issue belongs to the section "Genotype Evaluation and Breeding".

Deadline for manuscript submissions: closed (25 July 2023) | Viewed by 1150

Special Issue Editors


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Guest Editor
Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
Interests: plant architecture; systemic biology; plant organ development
Special Issues, Collections and Topics in MDPI journals

E-Mail Website
Guest Editor
1. College of Horticulture, Northwest A&F University, Yangling 712100, China
2. Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China
Interests: cucurbits crops; plant architecture; agronomic trait; domestication; regulation mechanism

Special Issue Information

Dear Colleagues,

Most important agronomic traits, such as yield, quality, plant architecture, and stress tolerance (including cold tolerance, high-temperature tolerance, salt tolerance, and drought tolerance), are complex traits. These traits are regulated by multiple genetic factors, so their inheritance is complicated and easy for the environment to influence. The gene cloning of crop-complex traits has only been reported in a few crops, such as rice, maize, tomato, etc. The genetic analysis of crop-complex traits needs further exploration. The cloning and mechanism of regulating genes for complex traits have only been reported in a few crops, so it is necessary to further explore the genetic study of crop-complex traits.

With the development of high-throughput sequencing technology, omics studies, such as genome, variome, epigenome, transcriptome, proteome, metabolome, and microbiome, have been developed rapidly. By integrating multiple omics of data, we can comprehensively and systematically understand the composition of complex agronomic traits, improve the efficiency of identifying the genetic factors regulating complex agronomic traits, and promote the process of molecular breeding. However, with the increasing amount and complexity of omics data from different sources, there are still challenges remaining on how to analyze these huge omics data quickly and accurately. Therefore, new insights and analytical methods are needed to use the huge amount of information to elucidate complex agronomic traits.

This research theme encourages the submission of recent research on the analysis of complex agronomic traits and the use of multiple omics of data to better understand the genetic basis of crop-complex traits. The results of this topic can be used to accelerate genetic improvements in crops. We welcome submissions in the following directions, including but not limited to:

  1. New study of genetic basis for crop-complex traits
  2. New methods or tools for integrating omics data
  3. New genetic selection strategies by using multi omics data

Dr. Xueyong Yang
Dr. Shenhao Wang
Guest Editors

Manuscript Submission Information

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Keywords

  • complex traits
  • crop improvement
  • multi omics
  • genetic mapping
  • gene cloning
  • molecular breeding

Published Papers (1 paper)

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Research

15 pages, 1923 KiB  
Article
Fine-Mapping of qECL7.1, a Quantitative Trait Locus Contributing to Epicotyl Length in Adzuki Bean (Vigna angularis)
by Modester Kachapila, Yuki Horiuchi, Hidetaka Nagasawa, Noe Michihata, Toru Yoshida, Yuta Kato, Paul C. Bethke, Kiyoaki Kato and Masahiko Mori
Agriculture 2023, 13(7), 1305; https://doi.org/10.3390/agriculture13071305 - 26 Jun 2023
Viewed by 908
Abstract
Increasing the epicotyl length (ECL) of adzuki bean cultivars enhances the suitability for mechanical weeding during the vegetative stages and harvesting at pod maturity. To explore the genetic control of ECL, and to identify molecular markers that could facilitate breeding for increased ECL, [...] Read more.
Increasing the epicotyl length (ECL) of adzuki bean cultivars enhances the suitability for mechanical weeding during the vegetative stages and harvesting at pod maturity. To explore the genetic control of ECL, and to identify molecular markers that could facilitate breeding for increased ECL, recombinant inbred lines (RILs) were developed from a cross between Toiku161 (long epicotyls) and Chihayahime (ordinary length epicotyls). In this study, four quantitative trait loci (QTLs) were identified for ECL by QTL-seq analysis, one each on chromosomes 2, 7, 10 and 11. Insertion and deletion (InDel)-based mapping also detected QTLs on chromosomes 7, qECL7.1, and 10, qECL10.1. Substitution mapping using InDel, cleaved amplified polymorphic sequence (CAPS), derived cleaved amplified polymorphic sequence (dCAPS), and single nucleotide polymorphism (SNP) markers narrowed the chromosomal location of qECL7.1 to a 418 kb region flanked by DNA markers TC99_10,211,134 bp and TC102_10,628,880 bp. A total of 35 genes were predicted within the qECL7.1 region. The ECL QTLs and molecular markers identified here will contribute towards marker-assisted selection of desirable long ECL genotypes that allow for increased mechanization and more efficient adzuki bean production. Full article
(This article belongs to the Special Issue Study on Genetic Factors Controlling Complex Traits in Crops)
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