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Non-Coding RNA, Volume 7, Issue 4

2021 December - 22 articles

Cover Story: Fifteen transcription factors (TF), such as IRF1, IRF2, MYC, RelA/p65, and STAT1, and 52 long non-coding RNAs (lncRNAs), such as BCDIN3D-AS1, MALAT1, NEAT1, and others, could coregulate 1066 protein-coding genes (PCG) altered in SARS-CoV-2 infected cells. Coregulated PCGs were enriched significantly with biological processes such as gene expression, mRNA splicing, the cell cycle, and the interleukin-1-mediated signaling pathway, and KEGG pathways such as ribosome, coronavirus disease, apoptosis, autophagy, MAPK signaling, the mTOR signaling pathway, and others relevant for COVID-19. Pathways related to other viral infections such as Hepatitis B, Hepatitis C, and Influenza A were also enriched significantly. Coregulation of PCG by lncRNA and TFs might play an important role in the pathogenesis of COVID-19. View this paper
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Articles (22)

  • Article
  • Open Access
10 Citations
4,797 Views
21 Pages

Progress toward SHAPE Constrained Computational Prediction of Tertiary Interactions in RNA Structure

  • Grégoire De Bisschop,
  • Delphine Allouche,
  • Elisa Frezza,
  • Benoît Masquida,
  • Yann Ponty,
  • Sebastian Will and
  • Bruno Sargueil

As more sequencing data accumulate and novel puzzling genetic regulations are discovered, the need for accurate automated modeling of RNA structure increases. RNA structure modeling from chemical probing experiments has made tremendous progress, howe...

  • Review
  • Open Access
51 Citations
10,572 Views
26 Pages

Advances in Non-Coding RNA Sequencing

  • Julia Micheel,
  • Aram Safrastyan and
  • Damian Wollny

Non-coding RNAs (ncRNAs) comprise a set of abundant and functionally diverse RNA molecules. Since the discovery of the first ncRNA in the 1960s, ncRNAs have been shown to be involved in nearly all steps of the central dogma of molecular biology. In r...

  • Review
  • Open Access
5 Citations
5,042 Views
17 Pages

Small RNAs Asserting Big Roles in Mycobacteria

  • Fatma S. Coskun,
  • Przemysław Płociński and
  • Nicolai S. C. van Oers

Tuberculosis (TB) is an infectious disease caused by Mycobacterium tuberculosis (Mtb), with 10.4 million new cases per year reported in the human population. Recent studies on the Mtb transcriptome have revealed the abundance of noncoding RNAs expres...

  • Review
  • Open Access
4 Citations
5,526 Views
17 Pages

Over recent years, the long known class of small nucleolar RNAs (snoRNAs) have gained interest among the scientific community, especially in the clinical context. The main molecular role of this interesting family of non-coding RNAs is to serve as sc...

  • Review
  • Open Access
2 Citations
9,648 Views
17 Pages

The Cohesin Complex and Its Interplay with Non-Coding RNAs

  • Merve Kuru-Schors,
  • Monika Haemmerle and
  • Tony Gutschner

The cohesin complex is a multi-subunit protein complex initially discovered for its role in sister chromatid cohesion. However, cohesin also has several other functions and plays important roles in transcriptional regulation, DNA double strand break...

  • Review
  • Open Access
5 Citations
4,334 Views
9 Pages

Differential Allelic Expression among Long Non-Coding RNAs

  • Michael B. Heskett,
  • Paul T. Spellman and
  • Mathew J. Thayer

Long non-coding RNAs (lncRNA) comprise a diverse group of non-protein-coding RNAs >200 bp in length that are involved in various normal cellular processes and disease states, and can affect coding gene expression through mechanisms in cis or in tr...

  • Feature Paper
  • Review
  • Open Access
51 Citations
8,741 Views
27 Pages

Long Non-Coding RNAs in Cardiovascular Diseases: Potential Function as Biomarkers and Therapeutic Targets of Exercise Training

  • Camila Caldas Martins Correia,
  • Luis Felipe Rodrigues,
  • Bruno Rocha de Avila Pelozin,
  • Edilamar Menezes Oliveira and
  • Tiago Fernandes

Despite advances in treatments and therapies, cardiovascular diseases (CVDs) remain one of the leading causes of death worldwide. The discovery that most of the human genome, although transcribed, does not encode proteins was crucial for focusing on...

  • Article
  • Open Access
6 Citations
6,091 Views
20 Pages

Binding of the RNA Chaperone Hfq on Target mRNAs Promotes the Small RNA RyhB-Induced Degradation in Escherichia coli

  • David Lalaouna,
  • Karine Prévost,
  • Seongjin Park,
  • Thierry Chénard,
  • Marie-Pier Bouchard,
  • Marie-Pier Caron,
  • Carin K. Vanderpool,
  • Jingyi Fei and
  • Eric Massé

28 September 2021

Many RNA-RNA interactions depend on molecular chaperones to form and remain stable in living cells. A prime example is the RNA chaperone Hfq, which is a critical effector involved in regulatory interactions between small RNAs (sRNAs) and cognate targ...

  • Article
  • Open Access
15 Citations
4,799 Views
27 Pages

MicroRNA Isoforms Contribution to Melanoma Pathogenesis

  • Elisabetta Broseghini,
  • Emi Dika,
  • Eric Londin and
  • Manuela Ferracin

27 September 2021

Cutaneous melanoma (CM) is the most lethal tumor among skin cancers, and its incidence is constantly increasing. A deeper understanding of the molecular processes guiding melanoma pathogenesis could improve diagnosis, treatment and prognosis. MicroRN...

  • Review
  • Open Access
14 Citations
5,499 Views
16 Pages

Long Non-Coding RNA Regulation of Epigenetics in Vascular Cells

  • Hester Garratt,
  • Robert Ashburn,
  • Miron Sopić,
  • Antonella Nogara,
  • Andrea Caporali and
  • Tijana Mitić

23 September 2021

The vascular endothelium comprises the interface between the circulation and the vessel wall and, as such, is under the dynamic regulation of vascular signalling, nutrients, and hypoxia. Understanding the molecular drivers behind endothelial cell (EC...

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Non-Coding RNA - ISSN 2311-553X